Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

32900773 .. 32904268

Gene Structure 3496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGAAACGCAAGCCGACAAAATCCAAACCCTAGCCGAGCAATACGCATTGGAGAAAGATGTGGGTACCAAGCCTGTTGAAGTAGAAGAAGTTGTTTCTGAGAAACCTGAGGAAACACCTGCTGCTGCAGAAGAAGAAAGCTCTAAAGTTACACCAGCTGTTGAAGAAAGCAGTGAAGCCAGTCCTGCTAGTGAAGAAGGCACTGAAACCAATCCTACCTCTGAAGCTGCTGCTGAAGAAAGTAGTGATAGTACTGACAACTCAGGTGACCAAGAAGTAGTTGAAGAGACACCTGAAATTAAGATTGAGACAGCACCAGCAGATTTCCGTTTCCCAACTACCAACCAGACAAGGCATTGCTTTACCCGATATATAGAGTATCATCGGTGCATAGCTGCAAAGGGGGAAGGTGCTCCCGAGTGTGACAAATTTGCAAAGTTTTACCGCTCTCTTTGCCCTGGTGAATGGGTTGAGAGATGGAATGAACAAAGGGAGAATGGAACTTTTCCAGGTCCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

175

Amino Acids

19.23

Weight (kDa)

4.3

Isoelectric Point (pI)

64.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	111 - 171	5.1e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	450
AciI	CCGC	2 cut(s)	5, 448
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	246, 258
AfaI	GTAC	2 cut(s)	70, 256
AgsI	TTSAA	3 cut(s)	83, 167, 287
AjnI	CCWGG	2 cut(s)	460, 511
AluBI	AGCT	4 cut(s)	144, 161, 230, 398
AluI	AGCT	4 cut(s)	144, 161, 230, 398
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	284, 305
Ama87I	CYCGRG	1 cut(s)	419
ApeKI	GCWGC	5 cut(s)	125, 128, 230, 233, 398
ApoI	RAATTY	1 cut(s)	431
Asp718I	GGTACC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	2 cut(s)	281, 476
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	5 cut(s)	112, 115, 217, 220, 385
BccI	CCATC	1 cut(s)	474
BciT130I	CCWGG	2 cut(s)	462, 513
BcoDI	GTCTC	2 cut(s)	284, 305
BfaI	CTAG	2 cut(s)	35, 192
BfmI	CTRYAG	2 cut(s)	129, 521
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	5 cut(s)	126, 129, 231, 234, 399
BlsI	GCNGC	5 cut(s)	127, 130, 232, 235, 400
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	462, 513
Bme18I	GGWCC	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	70, 517
BmrFI	CCNGG	2 cut(s)	462, 513
BsaJI	CCNNGG	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	462, 513
BseDI	CCNNGG	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	3 cut(s)	93, 102, 279
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	5 cut(s)	112, 115, 217, 220, 385
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	501
BsmAI	GTCTC	2 cut(s)	284, 305
BsmFI	GGGAC	1 cut(s)	501
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	418
BspACI	CCGC	2 cut(s)	5, 448
BspCNI	CTCAG	3 cut(s)	94, 103, 278
BspLI	GGNNCC	2 cut(s)	70, 517
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	462, 513
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	102, 111, 265
BstEII	GGTNACC	1 cut(s)	269
BstMAI	GTCTC	2 cut(s)	284, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 456
BstNI	CCWGG	2 cut(s)	462, 513
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	460, 511
BstSFI	CTRYAG	2 cut(s)	129, 521
BstV1I	GCAGC	5 cut(s)	112, 115, 217, 220, 385
Bsu36I	CCTNAGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 204
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	69, 255
CviJI	RGCY	8 cut(s)	17, 38, 76, 144, 161, 182, 230, 398
CviKI_1	RGCY	8 cut(s)	17, 38, 76, 144, 161, 182, 230, 398
CviQI	GTAC	2 cut(s)	69, 255
DdeI	CTNAG	3 cut(s)	102, 111, 265
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	246, 258
Eco81I	CCTNAGG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	419
Eco91I	GGTNACC	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	460, 511
FaiI	YATR	3 cut(s)	375, 377, 395
FaqI	GGGAC	1 cut(s)	501
Fnu4HI	GCNGC	5 cut(s)	126, 129, 231, 234, 399
Fsp4HI	GCNGC	5 cut(s)	126, 129, 231, 234, 399
FspBI	CTAG	2 cut(s)	35, 192
GluI	GCNGC	5 cut(s)	126, 129, 231, 234, 399
HphI	GGTGA	2 cut(s)	281, 476
Hpy188I	TCNGA	2 cut(s)	103, 226
Hpy188III	TCNNGA	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	194, 404
HpyCH4V	TGCA	4 cut(s)	131, 393, 401, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 456
HpyF3I	CTNAG	3 cut(s)	102, 111, 265
KpnI	GGTACC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	5 cut(s)	112, 115, 217, 220, 385
MaeI	CTAG	2 cut(s)	35, 192
MaeIII	GTNAC	3 cut(s)	151, 269, 425
MbiI	CCGCTC	1 cut(s)	450
MboII	GAAGA	7 cut(s)	101, 146, 149, 179, 209, 251, 299
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	2 cut(s)	300, 431
MnlI	CCTC	2 cut(s)	106, 232
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	462, 513
MvaI	CCWGG	2 cut(s)	462, 513
MwoI	GCNNNNNNNGC	2 cut(s)	188, 456
NlaIV	GGNNCC	2 cut(s)	70, 517
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	269, 425
PaqCI	CACCTGC	1 cut(s)	130
PkrI	GCNGC	5 cut(s)	127, 130, 232, 235, 400
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	460, 511
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	460, 511
PspN4I	GGNNCC	2 cut(s)	70, 517
PspPI	GGNCC	1 cut(s)	515
PspPPI	RGGWCCY	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	70, 256
RsaNI	GTAC	2 cut(s)	69, 255
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	5 cut(s)	126, 129, 231, 234, 399
Sau96I	GGNCC	1 cut(s)	515
ScaI	AGTACT	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	462, 513
SduI	GDGCHC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	129, 521
SinI	GGWCC	1 cut(s)	515
Sse9I	AATT	2 cut(s)	300, 431
SsiI	CCGC	2 cut(s)	5, 448
SspMI	CTAG	2 cut(s)	35, 192
StyD4I	CCNGG	2 cut(s)	460, 511
TasI	AATT	2 cut(s)	300, 431
TatI	WGTACW	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	181, 211
TseFI	GTSAC	2 cut(s)	269, 425
TseI	GCWGC	5 cut(s)	125, 128, 230, 233, 398
Tsp45I	GTSAC	2 cut(s)	269, 425
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	181, 211
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	431
XspI	CTAG	2 cut(s)	35, 192
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.