Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Reverse (-)

26898401 .. 26901937

Gene Structure 3537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGGAGCCGCAAGCCGACAAGCCCCCAACCCTAGCTGAGCAATACTCGTTGGAGAAACCAGTTGTGGCAACCAACCCAGACAATGCACCTAAGGAAGTTGTACCTGAGAAAGCTGAGGAAGCACCTGCTGCTCCAGAAGAAAGTCCAGTAGTTACACCGACTAGTGAAGAAACCAGTGAAGTCAGTCCTACTGTTGCTGAAACTGAAGCAGCCCCTGCTTCTGAAAACAGCAGTGAAGCAGCTCCTGAAGAAAGCAGTGATAGTACTGAAACCTCAGTTGAGCAGCAAGACGAAGCAGTTGAAGAGACACCTGAAATTAAGATTGAGACAGCACCAGCAGATTTCCGTTTCCCAACTACAAATCAGACAAGGCATTGCTTTACCCGATATGTAGAGTATCATCGGTGCATAGCTGCAAAGGGGGAAGAAGCTCCAGAGTGTGATAAATTCAAAAAGTATTATCGTTCTCTTTGCCCTGGTGAATGGGTGGAGAGATGGAATGAGCAAAGGGAGAACGGAACCTTCCCAGGTCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

181

Amino Acids

19.9

Weight (kDa)

4.33

Isoelectric Point (pI)

71.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	117 - 177	3.4e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	2 cut(s)	5, 11
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	2 cut(s)	228, 270
AfaI	GTAC	2 cut(s)	105, 268
AgsI	TTSAA	2 cut(s)	305, 454
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	478, 529
AluBI	AGCT	5 cut(s)	38, 116, 245, 416, 434
AluI	AGCT	5 cut(s)	38, 116, 245, 416, 434
Alw26I	GTCTC	2 cut(s)	302, 323
AlwNI	CAGNNNCTG	2 cut(s)	218, 248
ApeKI	GCWGC	5 cut(s)	131, 212, 242, 286, 416
ApoI	RAATTY	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	533
AxyI	CCTNAGG	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	5 cut(s)	118, 224, 254, 298, 403
BccI	CCATC	1 cut(s)	492
BciT130I	CCWGG	2 cut(s)	480, 531
BcoDI	GTCTC	2 cut(s)	302, 323
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	35, 165
BfmI	CTRYAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	6 cut(s)	11, 132, 213, 243, 287, 417
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	6 cut(s)	12, 133, 214, 244, 288, 418
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	480, 531
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	2 cut(s)	9, 523
BmrFI	CCNGG	2 cut(s)	480, 531
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	2 cut(s)	120, 420
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	478, 529
Bse1I	ACTGG	3 cut(s)	62, 149, 177
Bse21I	CCTNAGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	480, 531
BseDI	CCNNGG	2 cut(s)	478, 529
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	4 cut(s)	30, 99, 108, 291
BseNI	ACTGG	3 cut(s)	62, 149, 177
BseXI	GCAGC	5 cut(s)	118, 224, 254, 298, 403
BsmAI	GTCTC	2 cut(s)	302, 323
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	5, 11
BspCNI	CTCAG	4 cut(s)	31, 100, 109, 290
BspLI	GGNNCC	2 cut(s)	9, 523
BspMI	ACCTGC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	3 cut(s)	62, 149, 177
BssECI	CCNNGG	2 cut(s)	478, 529
Bst2UI	CCWGG	2 cut(s)	480, 531
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	2 cut(s)	131, 218
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	5 cut(s)	39, 93, 108, 117, 277
BstMAI	GTCTC	2 cut(s)	302, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 218
BstNI	CCWGG	2 cut(s)	480, 531
BstSCI	CCNGG	2 cut(s)	478, 529
BstSFI	CTRYAG	1 cut(s)	539
BstV1I	GCAGC	5 cut(s)	118, 224, 254, 298, 403
Bsu36I	CCTNAGG	1 cut(s)	93
BtsI	GCAGTG	2 cut(s)	241, 265
BtsIMutI	CAGTG	3 cut(s)	184, 241, 265
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	15
CaiI	CAGNNNCTG	2 cut(s)	218, 248
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	104, 267
CviJI	RGCY	9 cut(s)	10, 17, 25, 38, 116, 215, 245, 416, 434
CviKI_1	RGCY	9 cut(s)	10, 17, 25, 38, 116, 215, 245, 416, 434
CviQI	GTAC	2 cut(s)	104, 267
DdeI	CTNAG	5 cut(s)	39, 93, 108, 117, 277
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	2 cut(s)	228, 270
Eco81I	CCTNAGG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	478, 529
FaiI	YATR	2 cut(s)	393, 413
Fnu4HI	GCNGC	6 cut(s)	11, 132, 213, 243, 287, 417
Fsp4HI	GCNGC	6 cut(s)	11, 132, 213, 243, 287, 417
FspBI	CTAG	2 cut(s)	35, 165
GluI	GCNGC	6 cut(s)	11, 132, 213, 243, 287, 417
GsuI	CTGGAG	2 cut(s)	120, 420
HphI	GGTGA	1 cut(s)	494
Hpy188I	TCNGA	2 cut(s)	226, 369
Hpy188III	TCNNGA	3 cut(s)	137, 248, 437
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	89, 411, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 218
HpyF3I	CTNAG	5 cut(s)	39, 93, 108, 117, 277
LmnI	GCTCC	4 cut(s)	7, 139, 250, 439
Lsp1109I	GCAGC	5 cut(s)	118, 224, 254, 298, 403
MaeI	CTAG	2 cut(s)	35, 165
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	5 cut(s)	152, 182, 263, 317, 440
MluCI	AATT	2 cut(s)	318, 449
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	112, 286
MseI	TTAA	1 cut(s)	321
MspR9I	CCNGG	2 cut(s)	480, 531
MvaI	CCWGG	2 cut(s)	480, 531
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 218
NlaIV	GGNNCC	2 cut(s)	9, 523
PaqCI	CACCTGC	1 cut(s)	136
PkrI	GCNGC	6 cut(s)	12, 133, 214, 244, 288, 418
PpuMI	RGGWCCY	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	478, 529
PspGI	CCWGG	2 cut(s)	478, 529
PspN4I	GGNNCC	2 cut(s)	9, 523
PspPI	GGNCC	1 cut(s)	533
PspPPI	RGGWCCY	1 cut(s)	533
PstNI	CAGNNNCTG	2 cut(s)	218, 248
RsaI	GTAC	2 cut(s)	105, 268
RsaNI	GTAC	2 cut(s)	104, 267
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	6 cut(s)	11, 132, 213, 243, 287, 417
Sau96I	GGNCC	1 cut(s)	533
ScaI	AGTACT	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	480, 531
SfcI	CTRYAG	1 cut(s)	539
SinI	GGWCC	1 cut(s)	533
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	2 cut(s)	318, 449
SsiI	CCGC	2 cut(s)	5, 11
SspMI	CTAG	2 cut(s)	35, 165
StyD4I	CCNGG	2 cut(s)	478, 529
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	2 cut(s)	318, 449
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	3 cut(s)	184, 241, 265
TseI	GCWGC	5 cut(s)	131, 212, 242, 286, 416
TspGWI	ACGGA	2 cut(s)	338, 534
TspRI	CASTG	3 cut(s)	184, 241, 265
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	1 cut(s)	449
XspI	CTAG	2 cut(s)	35, 165
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.