Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00219

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

10493 .. 13928

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGGAGCCGCAAGCCGACAAACCCCAAACCCTAGCTGAGCAATACGCACTGGAGAAACCAGATGTGGTAAGCAAGCCTGTTGAGGTAAAAGTGGTTGAGACCCCGGACAATGTACCTTCCAAGGAAGTTGTCTCTGAGAAAGCTGAAGAAGCACCTGCTGCTCCAGAAGAAAGTCCAGTAGTTACACCAGCTAGTGAAGAAACCAGTGAAGTCAGTCCTACTGTCGCTGAAACTGAAACAAAACCTGCCTCTGAAAACAGCAGTGAAGCAGCTCCTGAAGAAAGCAGTGATAGTACTGAAACATCTGTTGACCAAGAAGCAGTTGAAGAGACACCTGAAATTAAGATTGAGACAGCACCAGCAGATTTCCGTTTCCCAACTACAAATCAGACCAGGCATTGCTTTACCCGATACGTAGAATATCATCGGTGCATAGCTGCAAAGGGGGAAGAAGCTCCAGAGTGTGATAAATTTAAAAAGTACTATCGTTCTCTTTGCCCCGGTGAATGGGTGGATAGATGGAATGAGCAAAGGGAGAACGGAACCTTTCCAGGTCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

188

Amino Acids

20.83

Weight (kDa)

4.4

Isoelectric Point (pI)

65.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	125 - 185	7e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	2 cut(s)	166, 256
AciI	CCGC	2 cut(s)	5, 11
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	168, 300
AfaI	GTAC	3 cut(s)	117, 298, 485
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	395, 553
AluBI	AGCT	6 cut(s)	38, 146, 194, 275, 440, 458
AluI	AGCT	6 cut(s)	38, 146, 194, 275, 440, 458
Alw26I	GTCTC	4 cut(s)	95, 139, 326, 347
AlwNI	CAGNNNCTG	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	161, 272, 440
ApoI	RAATTY	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	2 cut(s)	107, 504
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	148, 284, 427
BccI	CCATC	1 cut(s)	516
BciT130I	CCWGG	2 cut(s)	397, 555
BcnI	CCSGG	2 cut(s)	107, 504
BcoDI	GTCTC	4 cut(s)	95, 139, 326, 347
BfaI	CTAG	2 cut(s)	35, 195
BfmI	CTRYAG	1 cut(s)	563
BfuAI	ACCTGC	2 cut(s)	166, 256
BisI	GCNGC	4 cut(s)	11, 162, 273, 441
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	4 cut(s)	12, 163, 274, 442
BmcAI	AGTACT	2 cut(s)	298, 485
Bme1390I	CCNGG	4 cut(s)	107, 397, 504, 555
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	2 cut(s)	9, 547
BmrFI	CCNGG	4 cut(s)	107, 397, 504, 555
BpmI	CTGGAG	3 cut(s)	74, 150, 444
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	107, 504
BsaAI	YACGTR	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	105, 123, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	3 cut(s)	57, 179, 207
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	397, 555
BseDI	CCNNGG	3 cut(s)	105, 123, 502
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	30, 129
BseNI	ACTGG	3 cut(s)	57, 179, 207
BseXI	GCAGC	3 cut(s)	148, 284, 427
BsiSI	CCGG	2 cut(s)	107, 504
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	4 cut(s)	95, 139, 326, 347
Bso31I	GGTCTC	1 cut(s)	95
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	5, 11
BspCNI	CTCAG	2 cut(s)	31, 130
BspLI	GGNNCC	2 cut(s)	9, 547
BspMI	ACCTGC	2 cut(s)	166, 256
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	57, 179, 207
BssECI	CCNNGG	3 cut(s)	105, 123, 502
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	397, 555
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	15, 77
BstDEI	CTNAG	2 cut(s)	39, 138
BstMAI	GTCTC	4 cut(s)	95, 139, 326, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 161
BstNI	CCWGG	2 cut(s)	397, 555
BstSCI	CCNGG	4 cut(s)	105, 395, 502, 553
BstSFI	CTRYAG	1 cut(s)	563
BstSNI	TACGTA	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	148, 284, 427
BtsI	GCAGTG	2 cut(s)	271, 295
BtsIMutI	CAGTG	4 cut(s)	50, 214, 271, 295
BveI	ACCTGC	2 cut(s)	166, 256
Cac8I	GCNNGC	2 cut(s)	15, 77
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	3 cut(s)	116, 297, 484
CviJI	RGCY	9 cut(s)	10, 17, 38, 79, 146, 194, 275, 440, 458
CviKI_1	RGCY	9 cut(s)	10, 17, 38, 79, 146, 194, 275, 440, 458
CviQI	GTAC	3 cut(s)	116, 297, 484
DdeI	CTNAG	2 cut(s)	39, 138
DraI	TTTAAA	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	2 cut(s)	168, 300
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	395, 553
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	11, 162, 273, 441
Fsp4HI	GCNGC	4 cut(s)	11, 162, 273, 441
FspBI	CTAG	2 cut(s)	35, 195
GluI	GCNGC	4 cut(s)	11, 162, 273, 441
GsuI	CTGGAG	3 cut(s)	74, 150, 444
HapII	CCGG	2 cut(s)	107, 504
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	107, 504
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	139, 256, 393
Hpy188III	TCNNGA	3 cut(s)	167, 278, 461
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	435, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 161
HpyF3I	CTNAG	2 cut(s)	39, 138
HpySE526I	ACGT	1 cut(s)	417
LmnI	GCTCC	4 cut(s)	7, 169, 280, 463
Lsp1109I	GCAGC	3 cut(s)	148, 284, 427
MaeI	CTAG	2 cut(s)	35, 195
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	184
MboII	GAAGA	6 cut(s)	161, 182, 212, 293, 341, 464
MluCI	AATT	2 cut(s)	342, 473
MnlI	CCTC	2 cut(s)	79, 262
MseI	TTAA	2 cut(s)	345, 477
MspI	CCGG	2 cut(s)	107, 504
MspR9I	CCNGG	4 cut(s)	107, 397, 504, 555
MvaI	CCWGG	2 cut(s)	397, 555
MwoI	GCNNNNNNNGC	2 cut(s)	152, 161
NciI	CCSGG	2 cut(s)	107, 504
NlaIV	GGNNCC	2 cut(s)	9, 547
PaqCI	CACCTGC	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	12, 163, 274, 442
Ppu21I	YACGTR	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	395, 553
PspGI	CCWGG	2 cut(s)	395, 553
PspN4I	GGNNCC	2 cut(s)	9, 547
PspPI	GGNCC	1 cut(s)	557
PspPPI	RGGWCCY	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	278
RsaI	GTAC	3 cut(s)	117, 298, 485
RsaNI	GTAC	3 cut(s)	116, 297, 484
SaqAI	TTAA	2 cut(s)	345, 477
SatI	GCNGC	4 cut(s)	11, 162, 273, 441
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	2 cut(s)	298, 485
ScrFI	CCNGG	4 cut(s)	107, 397, 504, 555
SfcI	CTRYAG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	557
SnaBI	TACGTA	1 cut(s)	418
Sse9I	AATT	2 cut(s)	342, 473
SsiI	CCGC	2 cut(s)	5, 11
SspMI	CTAG	2 cut(s)	35, 195
StyD4I	CCNGG	4 cut(s)	105, 395, 502, 553
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	420
TasI	AATT	2 cut(s)	342, 473
TatI	WGTACW	2 cut(s)	296, 483
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	345, 477
Tru9I	TTAA	2 cut(s)	345, 477
TscAI	CASTG	4 cut(s)	57, 214, 271, 295
TseI	GCWGC	3 cut(s)	161, 272, 440
TspGWI	ACGGA	2 cut(s)	362, 558
TspRI	CASTG	4 cut(s)	57, 214, 271, 295
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	473
XspI	CTAG	2 cut(s)	35, 195
ZrmI	AGTACT	2 cut(s)	298, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.