Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

9285025 .. 9286395

Gene Structure 1371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGACAGAACAAGAAGCTGAAGTTGGAACAGAGACATCCTCTGTTTCCGGAAGGTTTTTGAGGAACAGAGATTTATATCTCTTCTTGCCTTTTCTCTTAGGCTTCTCTGATCAAGAATCATCAAACGGAGATGATGATGATGTTGCTTCATCGCGTGAGAGAATCATTTTAGTCAACCCTTTTACACAAGGAATGATTGTGCTCGAAGGCTCATCAGGAATGAATCCTCTGCTTCGTAGCTTACTGGAGTCACGTGAGGAAGGTCGTCCTCCTGCGTCCAAGGCTTCCATCGATGCGATGCCGATCGTTGAGATTGATGGCTGTGAAGGAGAGTGTGTGATCTGTTTGGAGGAGTGGAAGTCCGAGGAGACGGTGAAGGAGATGCCGTGTAAGCATAGGTTTCACGGTGGATGTATAGAGAAATGGTTAGGGTTTCATGGGTCGTGTCCTGTTTGTAGGTACGAGATGCCTGTTGATGGAGATGAGATTGGGAAGAAAAGAAACGATGGGAATGAGATTTGGGTTAGGTTCAGTTTCAACGATGGTCGGAGAATTAGAGATTTTTCTGCGCAGGACGGTGGAAACAGTGATGGTGTTGAGTCCGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

204

Amino Acids

22.74

Weight (kDa)

4.56

Isoelectric Point (pI)

58.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	109 - 154	1.5e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	112 - 154	8.4e-16	Ring finger domain
zf-RING_11	PF17123	112 - 140	7.9e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	112 - 153	2.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	113 - 153	1.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	573
AccII	CGCG	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	42
AcvI	CACGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	2 cut(s)	20, 243
AluI	AGCT	2 cut(s)	20, 243
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	29, 365
Aor13HI	TCCGGA	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	388
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	6 cut(s)	299, 314, 473, 503, 539, 587
BceAI	ACGGC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	29, 365
BmsI	GCATC	4 cut(s)	286, 291, 375, 459
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	2 cut(s)	78, 305
BsaJI	CCNNGG	2 cut(s)	282, 366
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	6 cut(s)	324, 347, 354, 374, 377, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	252
Bse8I	GATNNNNATC	2 cut(s)	78, 305
BseAI	TCCGGA	1 cut(s)	50
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	282, 366
BseGI	GGATG	2 cut(s)	38, 419
BseJI	GATNNNNATC	2 cut(s)	78, 305
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	2 cut(s)	368, 383
Bsh1236I	CGCG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	309
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	29, 365
BsmBI	CGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	112, 306, 342
BspDI	ATCGAT	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	282, 366
BssMI	GATC	3 cut(s)	112, 306, 342
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	376, 410, 581, 590
Bst6I	CTCTTC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	38, 419
BstFNI	CGCG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	3 cut(s)	115, 309, 345
BstMAI	GTCTC	2 cut(s)	29, 365
BstMBI	GATC	3 cut(s)	112, 306, 342
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 394
BstUI	CGCG	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtgZI	GCGATG	2 cut(s)	138, 314
BtsCI	GGATG	2 cut(s)	38, 419
BtsIMutI	CAGTG	1 cut(s)	595
CfoI	GCGC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	6 cut(s)	20, 105, 213, 243, 287, 324
CviKI_1	RGCY	6 cut(s)	20, 105, 213, 243, 287, 324
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	3 cut(s)	114, 308, 344
DpnII	GATC	3 cut(s)	112, 306, 342
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	42
Eco72I	CACGTG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	1 cut(s)	443
FaiI	YATR	4 cut(s)	79, 399, 419, 441
FatI	CATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	2 cut(s)	25, 426
FspI	TGCGCA	1 cut(s)	573
GlaI	GCGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	269
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	5 cut(s)	119, 165, 226, 251, 602
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	112, 367, 552, 607
Hpy188III	TCNNGA	3 cut(s)	51, 116, 219
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	5 cut(s)	48, 203, 257, 323, 373
HpyCH4III	ACNGT	4 cut(s)	376, 410, 581, 590
HpyCH4IV	ACGT	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 394
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	1 cut(s)	572
Kpn2I	TCCGGA	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	112, 306, 342
LpnPI	CCDG	7 cut(s)	64, 204, 233, 288, 465, 486, 560
LweI	GCATC	4 cut(s)	286, 291, 375, 459
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	3 cut(s)	114, 308, 344
MboI	GATC	3 cut(s)	112, 306, 342
MboII	GAAGA	2 cut(s)	76, 508
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	555, 610
MlyI	GAGTC	2 cut(s)	260, 611
MmeI	TCCRAC	2 cut(s)	7, 530
MnlI	CCTC	7 cut(s)	52, 57, 240, 253, 282, 346, 361
MroI	TCCGGA	1 cut(s)	50
MspI	CCGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	284, 394
NdeII	GATC	3 cut(s)	112, 306, 342
NlaIII	CATG	1 cut(s)	443
NmuCI	GTSAC	1 cut(s)	252
NsbI	TGCGCA	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	119, 165, 226
Ple19I	CGATCG	1 cut(s)	309
PleI	GAGTC	2 cut(s)	259, 610
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	2 cut(s)	259, 610
Ppu21I	YACGTR	1 cut(s)	257
PspCI	CACGTG	1 cut(s)	257
PvuI	CGATCG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
Sau3AI	GATC	3 cut(s)	112, 306, 342
SchI	GAGTC	2 cut(s)	260, 611
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	8 cut(s)	22, 59, 245, 259, 268, 404, 464, 533
SfaNI	GCATC	4 cut(s)	286, 291, 375, 459
Sse9I	AATT	2 cut(s)	555, 610
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	4 cut(s)	376, 410, 581, 590
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	207, 294
TasI	AATT	2 cut(s)	555, 610
TfiI	GAWTC	3 cut(s)	119, 165, 226
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	3 cut(s)	141, 239, 428
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.