Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Forward (+)

28121405 .. 28122500

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G275700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTTCTGAAGCAGAGGCGTCTGAGATTGCTTCGTTTTTTGAAAGGATTGTGAGGGAGAGAGACCTGTCTCTGTTCGTGCCCTTCATCTTGGGCCTGGCAAGCGCCACCCCGAGAACTGACCCGGAAAACCCAGATCACGACAACCCAGATCAAGAAAACCCTGGAAGGCCGACCCCGCATGAAAGACTCATCTTCATCAACCCTTTCGCTCAGACTATGATGGTGGTCGAAGGCGATTCTCTGCAAGAGTTGGGTATGAAGGATGGCCAGCCACCGGCCTCGAAAGCCTCCATTGATGCCATGCCCTGTGTAAAGATTGTTGAAGGTGATGGTGGGTCCGAGTGTGTGATCTGCTTGGAGCAGTTTGAGATTGATGGTGTGGCCAAAGAGATGCCTTGCAAGCATAGGTTTCACGGTGGTTGTATAGAGAAGTGGTTGAAGATTCATGGGTCTTGCCCAGTTTGTCGGTATAACATGCCTGTTGATGAGGAAGAGCCGGGGAAGAAGATAGATGGCGCGGACAGAGAGAGGAGGGTCGAGGGAGAGATTAGGGTTAGCTTTTATGTCCAAGAGAGCACGAGAGCAAGTGAGGATTCTGAGCAAACACCTTCAGGTGATTTTAATGCCAGTGATTCCTCTTCAAGCCCAGCAGCTGATCACGATGATATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

24.92

Weight (kDa)

4.53

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	521
AciI	CCGC	2 cut(s)	179, 521
AcoI	YGGCCR	2 cut(s)	268, 384
AcuI	CTGAAG	2 cut(s)	30, 597
AcyI	GRCGYC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	44, 326, 442, 645
AjnI	CCWGG	2 cut(s)	96, 163
AluBI	AGCT	2 cut(s)	561, 656
AluI	AGCT	2 cut(s)	561, 656
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	2 cut(s)	57, 75
AlwNI	CAGNNNCTG	1 cut(s)	656
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	5 cut(s)	94, 170, 268, 279, 384
ApeKI	GCWGC	1 cut(s)	653
AspLEI	GCGC	2 cut(s)	107, 521
AspS9I	GGNCC	2 cut(s)	94, 339
AsuC2I	CCSGG	2 cut(s)	125, 501
AsuHPI	GGTGA	2 cut(s)	341, 629
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	84
BalI	TGGCCA	2 cut(s)	270, 386
BauI	CACGAG	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	581
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	5 cut(s)	217, 260, 326, 371, 509
BciT130I	CCWGG	2 cut(s)	98, 165
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	2 cut(s)	125, 501
BcoDI	GTCTC	2 cut(s)	57, 75
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	4 cut(s)	98, 125, 165, 501
Bme18I	GGWCC	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	94, 339
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	4 cut(s)	98, 125, 165, 501
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	289, 384
BmuI	ACTGGG	1 cut(s)	455
BpuMI	CCSGG	2 cut(s)	125, 501
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	163, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	461, 630
BseBI	CCWGG	2 cut(s)	98, 165
BseDI	CCNNGG	2 cut(s)	163, 500
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	15, 227, 591
BseNI	ACTGG	2 cut(s)	461, 630
BseRI	GAGGAG	1 cut(s)	547
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	665
BseYI	CCCAGC	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	5 cut(s)	96, 172, 270, 281, 386
BsiHKAI	GWGCWC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	125, 278, 500
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	57, 75
BsnI	GGCC	5 cut(s)	96, 172, 270, 281, 386
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	84, 581
Bsp143I	GATC	4 cut(s)	136, 151, 351, 658
BspACI	CCGC	2 cut(s)	179, 521
BspANI	GGCC	5 cut(s)	96, 172, 270, 281, 386
BspCNI	CTCAG	3 cut(s)	16, 226, 592
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	461, 630
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	163, 500
BssMI	GATC	4 cut(s)	136, 151, 351, 658
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	98, 165
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	489, 646
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	103, 272, 404
BstDEI	CTNAG	3 cut(s)	24, 213, 600
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	107, 521
BstKTI	GATC	4 cut(s)	139, 154, 354, 661
BstMAI	GTCTC	2 cut(s)	57, 75
BstMBI	GATC	4 cut(s)	136, 151, 351, 658
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 102, 178, 287, 403
BstNI	CCWGG	2 cut(s)	98, 165
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	4 cut(s)	96, 123, 163, 499
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	1 cut(s)	665
BsuRI	GGCC	5 cut(s)	96, 172, 270, 281, 386
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	3 cut(s)	103, 272, 404
CaiI	CAGNNNCTG	1 cut(s)	656
CfoI	GCGC	2 cut(s)	107, 521
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	94, 339
CseI	GACGC	1 cut(s)	9
CviAII	CATG	4 cut(s)	182, 304, 449, 478
DdeI	CTNAG	3 cut(s)	24, 213, 600
DpnI	GATC	4 cut(s)	138, 153, 353, 660
DpnII	GATC	4 cut(s)	136, 151, 351, 658
EaeI	YGGCCR	2 cut(s)	268, 384
Eam1104I	CTCTTC	2 cut(s)	489, 646
EarI	CTCTTC	2 cut(s)	489, 646
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	339
Eco57I	CTGAAG	2 cut(s)	30, 597
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	96, 163
FaeI	CATG	4 cut(s)	185, 307, 452, 481
FatI	CATG	4 cut(s)	181, 303, 448, 477
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	654
GlaI	GCGC	2 cut(s)	106, 520
GluI	GCNGC	1 cut(s)	654
GsaI	CCCAGC	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	5 cut(s)	96, 172, 270, 281, 386
HapII	CCGG	3 cut(s)	125, 278, 500
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	2 cut(s)	107, 521
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	185, 307, 452, 481
Hin6I	GCGC	2 cut(s)	105, 519
HinP1I	GCGC	2 cut(s)	105, 519
HinfI	GANTC	5 cut(s)	189, 239, 445, 596, 635
HpaII	CCGG	3 cut(s)	125, 278, 500
HphI	GGTGA	2 cut(s)	341, 629
Hpy188I	TCNGA	5 cut(s)	10, 25, 216, 343, 601
Hpy188III	TCNNGA	3 cut(s)	140, 155, 662
HpyAV	CCTTC	6 cut(s)	94, 162, 227, 256, 320, 621
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	247, 402, 673
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 102, 178, 287, 403
HpyF3I	CTNAG	3 cut(s)	24, 213, 600
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	185, 307, 452, 481
HspAI	GCGC	2 cut(s)	105, 519
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	136, 151, 351, 658
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	665
LweI	GCATC	2 cut(s)	289, 384
MalI	GATC	4 cut(s)	138, 153, 353, 660
MboI	GATC	4 cut(s)	136, 151, 351, 658
MboII	GAAGA	6 cut(s)	187, 454, 506, 517, 520, 633
MhlI	GDGCHC	2 cut(s)	84, 581
MlsI	TGGCCA	2 cut(s)	270, 386
MluNI	TGGCCA	2 cut(s)	270, 386
MlyI	GAGTC	1 cut(s)	183
Mox20I	TGGCCA	2 cut(s)	270, 386
MscI	TGGCCA	2 cut(s)	270, 386
MseI	TTAA	1 cut(s)	624
Msp20I	TGGCCA	2 cut(s)	270, 386
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	3 cut(s)	125, 278, 500
MspR9I	CCNGG	4 cut(s)	98, 125, 165, 501
MvaI	CCWGG	2 cut(s)	98, 165
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	5 cut(s)	11, 102, 178, 287, 403
NciI	CCSGG	2 cut(s)	125, 501
NdeII	GATC	4 cut(s)	136, 151, 351, 658
NlaIII	CATG	4 cut(s)	185, 307, 452, 481
NlaIV	GGNNCC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	481
PciSI	GCTCTTC	1 cut(s)	489
PfeI	GAWTC	4 cut(s)	239, 445, 596, 635
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	96, 163
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	96, 163
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	94, 339
PstNI	CAGNNNCTG	1 cut(s)	656
PvuII	CAGCTG	1 cut(s)	656
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	4 cut(s)	136, 151, 351, 658
Sau96I	GGNCC	2 cut(s)	94, 339
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	4 cut(s)	98, 125, 165, 501
SduI	GDGCHC	2 cut(s)	84, 581
SetI	ASST	7 cut(s)	69, 331, 413, 563, 613, 619, 658
SfaNI	GCATC	2 cut(s)	289, 384
SinI	GGWCC	1 cut(s)	339
SsiI	CCGC	2 cut(s)	179, 521
StyD4I	CCNGG	4 cut(s)	96, 123, 163, 499
TaaI	ACNGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	231, 284, 540
TfiI	GAWTC	4 cut(s)	239, 445, 596, 635
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	1 cut(s)	653
TspDTI	ATGAA	5 cut(s)	76, 187, 198, 275, 437
TspRI	CASTG	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	339
XceI	RCATGY	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.