Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

58175203 .. 58175715

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG265900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTTCCGACGCCGCCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCCGCGACCGAGATCTCCCTCCGATCATCCCTTTCATCATGGGCTTTGCCGTTGCCGGATCCACGACAGACTCCGATCAACAGCAAACAAACGATTGTAGACAGGAGCGTGTTAATAGACTCGTCGTCATCAATCGCGAGGAGCAGAACATGGTGGTGATTGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCGAATTGGCCAAGGACGGTCACCCGCCGACGTCCAAGGCCTCCATCGCCGCCATGCCGACGGTGACGGTTGTGGAAAGCAGCCGCGAGTGTCCGATTTGCCTCGACCAGTTTGAGGTCGGCGGAGAGGCCAAAGAGATGCCTTGCAGTCATTTGTTTCATGGGGATTGTGTGGAGAAGTGGTTGAAGGTTCACGAGACTTGCCCGGTTTGCCGGTTCAAGATACCGGCCGACGAGGAAGAAGAGCCGGAGAAGAAGATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

18.94

Weight (kDa)

4.84

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 154	2e-16	Ring finger domain
zf-RING_11	PF17123	112 - 140	1.8e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	112 - 153	2.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	113 - 153	2.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	113 - 151	9.9e-07	RING-type zinc-finger
zf-rbx1	PF12678	125 - 154	4.9e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	4 cut(s)	57, 189, 249, 333
AclWI	GGATC	2 cut(s)	105, 118
AcoI	YGGCCR	2 cut(s)	255, 474
AcyI	GRCGYC	2 cut(s)	12, 278
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	433, 466
AhdI	GACNNNNNGTC	1 cut(s)	176
Alw26I	GTCTC	2 cut(s)	25, 437
AlwI	GGATC	2 cut(s)	105, 118
AoxI	GGCC	4 cut(s)	255, 285, 375, 474
ApeKI	GCWGC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	220, 260, 322
BalI	TGGCCA	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	2, 86
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	25, 437
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
BlsI	GCNGC	6 cut(s)	16, 56, 221, 298, 329, 332
Bme1390I	CCNGG	1 cut(s)	452
BmeRI	GACNNNNNGTC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	112, 223
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	2 cut(s)	234, 375
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpuMI	CCSGG	1 cut(s)	452
BsaHI	GRCGYC	2 cut(s)	12, 278
BsaJI	CCNNGG	2 cut(s)	258, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	2 cut(s)	459, 472
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	258, 282
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	206
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	339
Bsh1236I	CGCG	4 cut(s)	57, 189, 249, 333
Bsh1285I	CGRYCG	3 cut(s)	46, 61, 477
BshFI	GGCC	4 cut(s)	257, 287, 377, 476
BsiEI	CGRYCG	3 cut(s)	46, 61, 477
BsiSI	CCGG	6 cut(s)	108, 225, 452, 460, 473, 494
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	25, 437
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	257, 287, 377, 476
Bsp143I	GATC	5 cut(s)	64, 75, 110, 127, 504
Bsp68I	TCGCGA	1 cut(s)	189
BspANI	GGCC	4 cut(s)	257, 287, 377, 476
BspFNI	CGCG	4 cut(s)	57, 189, 249, 333
BspLI	GGNNCC	2 cut(s)	112, 223
BspPI	GGATC	2 cut(s)	105, 118
BspQI	GCTCTTC	1 cut(s)	483
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	459, 472
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	2 cut(s)	459, 472
BssECI	CCNNGG	2 cut(s)	258, 282
BssMI	GATC	5 cut(s)	64, 75, 110, 127, 504
BssNI	GRCGYC	2 cut(s)	12, 278
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	258, 282
Bst2BI	CACGAG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	266, 310, 316
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	2 cut(s)	12, 278
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	4 cut(s)	57, 189, 249, 333
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	5 cut(s)	67, 78, 113, 130, 507
BstMAI	GTCTC	2 cut(s)	25, 437
BstMBI	GATC	5 cut(s)	64, 75, 110, 127, 504
BstMCI	CGRYCG	3 cut(s)	46, 61, 477
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 54, 225, 293, 456
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	450
BstUI	CGCG	4 cut(s)	57, 189, 249, 333
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	64, 110
BstYI	RGATCY	2 cut(s)	64, 110
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	257, 287, 377, 476
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	78
BtuMI	TCGCGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	2 cut(s)	459, 472
CseI	GACGC	1 cut(s)	20
CviAII	CATG	4 cut(s)	91, 202, 301, 407
CviJI	RGCY	9 cut(s)	5, 96, 222, 257, 287, 330, 377, 476, 493
CviKI_1	RGCY	9 cut(s)	5, 96, 222, 257, 287, 330, 377, 476, 493
DpnI	GATC	5 cut(s)	66, 77, 112, 129, 506
DpnII	GATC	5 cut(s)	64, 75, 110, 127, 504
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	2 cut(s)	255, 474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	483
EciI	GGCGGA	3 cut(s)	41, 243, 384
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	258, 282
Eco147I	AGGCCT	1 cut(s)	287
Eco52I	CGGCCG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	258, 282
ErhI	CCWWGG	2 cut(s)	258, 282
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	4 cut(s)	94, 205, 304, 410
FaiI	YATR	4 cut(s)	92, 203, 302, 408
FatI	CATG	4 cut(s)	90, 201, 300, 406
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
HaeIII	GGCC	4 cut(s)	257, 287, 377, 476
HapII	CCGG	6 cut(s)	108, 225, 452, 460, 473, 494
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	2 cut(s)	12, 278
Hin1II	CATG	4 cut(s)	94, 205, 304, 410
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	4 cut(s)	122, 171, 231, 236
HpaII	CCGG	6 cut(s)	108, 225, 452, 460, 473, 494
HphI	GGTGA	3 cut(s)	220, 260, 322
Hpy166II	GTNNAC	2 cut(s)	152, 439
Hpy188I	TCNGA	5 cut(s)	10, 75, 127, 243, 342
Hpy188III	TCNNGA	3 cut(s)	188, 440, 466
Hpy8I	GTNNAC	2 cut(s)	152, 439
Hpy99I	CGWCG	5 cut(s)	14, 179, 280, 310, 482
HpyAV	CCTTC	2 cut(s)	46, 427
HpyCH4III	ACNGT	3 cut(s)	266, 310, 316
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	393
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 54, 225, 293, 456
HpySE526I	ACGT	1 cut(s)	278
Hsp92I	GRCGYC	2 cut(s)	12, 278
Hsp92II	CATG	4 cut(s)	94, 205, 304, 410
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	64, 75, 110, 127, 504
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	157, 193, 227
LpnPI	CCDG	8 cut(s)	121, 140, 238, 368, 465, 473, 486, 507
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	2 cut(s)	234, 375
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	266, 310
MalI	GATC	5 cut(s)	66, 77, 112, 129, 506
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	5 cut(s)	64, 75, 110, 127, 504
MboII	GAAGA	4 cut(s)	31, 497, 500, 511
MflI	RGATCY	2 cut(s)	64, 110
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	26, 251
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	3 cut(s)	116, 165, 230
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	8 cut(s)	59, 81, 184, 298, 355, 359, 367, 475
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	6 cut(s)	108, 225, 452, 460, 473, 494
MspR9I	CCNGG	1 cut(s)	452
MvnI	CGCG	4 cut(s)	57, 189, 249, 333
MwoI	GCNNNNNNNGC	5 cut(s)	11, 54, 225, 293, 456
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	5 cut(s)	64, 75, 110, 127, 504
NlaIII	CATG	4 cut(s)	94, 205, 304, 410
NlaIV	GGNNCC	2 cut(s)	112, 223
NmuCI	GTSAC	2 cut(s)	266, 310
NruI	TCGCGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	16, 56, 221, 298, 329, 332
PleI	GAGTC	3 cut(s)	116, 165, 230
PpsI	GAGTC	3 cut(s)	116, 165, 230
PspEI	GGTNACC	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	112, 223
PsuI	RGATCY	2 cut(s)	64, 110
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
Sau3AI	GATC	5 cut(s)	64, 75, 110, 127, 504
SchI	GAGTC	3 cut(s)	116, 165, 230
ScrFI	CCNGG	1 cut(s)	452
SetI	ASST	3 cut(s)	281, 366, 438
SfaNI	GCATC	2 cut(s)	234, 375
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	26, 251
SseBI	AGGCCT	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	2 cut(s)	258, 282
TaaI	ACNGT	3 cut(s)	266, 310, 316
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	4 cut(s)	42, 234, 351, 507
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	26, 251
TauI	GCSGC	5 cut(s)	17, 57, 222, 299, 333
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	266, 310
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	2 cut(s)	266, 310
TspDTI	ATGAA	2 cut(s)	76, 395
XmiI	GTMKAC	1 cut(s)	151
ZraI	GACGTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.