RLG00000006246

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
5504904 .. 5509797
4894 bp
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UTR
Exon/CDS
Intron
RLM00000006246

Sequence Viewer

Length: 1077 bp
ATGGGGTTGTCGCGGCCTGAGATCTCTTTAGGTTTCGGCCTATGTATGTTTGCCCTCGTTGCTTTCAGGAGCAATAGATTAATGTGGTGTGAGAATTTTGAGGGTTCGATGTTGTTTTTTGACGATAGCTGCTCCGATTTGGGTCGTGTTGCAGGGGTTAGGCTGGATTGGGCGGGGATTGATGGCGGTGGAATCGATTGGGGTTTGTGGGATCCAGTATTTGCAGGCGGTCTGGCAGGAAGGGATTATGCAGGCGGCAGGATTCGCAGTGGGGCTGGTCGTGGGCTTCGAGGTTCCGTGATCGGGGCTAACTGTGCAAATGGATCTGGGTTTGGGACCTGGGTTTTTGGGGCTACGATGGCGACGACTTGGAGGTCGGCGATGGCTATAGCAGTAGGGCAGTTTCTTTTACTGAAAGTCACGAGGCCGAGTGTGACGGCGCTGGGTTTCATGGCTTCCGACGCCGCCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCAGCGACCGAGACCTCCCTCCGATCATCCCCTTCATCATGGGCTTGGCCGTCGCCGGATCCACGACAGGCTCCGATCAACAGCAAACCGACGATCGTAGACCGGAGCGTGTTAACCGACTCGTCGTCGTCAATCGCGAGGAGCAAAACATGGTGGTGATCGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCCAATTGGCCAAGGACGGCCACCCGCCGGCGTCCATGGCCTCCATCGCCTCCATGCCGACGGTGACGGTTGCGGAAAGCGGCCGCGAGTGTCCGATTTGCCTCGACCAGTTTGAGGTCGGCGGAGAGGCCAAAGAGATGCCTTGCAGTCATTTGTTTCACGGGGATTGTGTTGACAAGTGGTTGAAGGTTCACGGGACTTGCCCGATTTGCCGGTTCACGATGCCGGCCGACGAGGAAGAAGAGCCGGAGAAGAAGAATGAGCCTGGAATTTCTGTCAGCATATTTATAAGGGCAACAAGTGAAGAGTCAGATCGAACTGGTGATTCGACTCCAACCGAAGCAGCAGCTGATGATGATAGTGATCAGATGCAGAGTTAG

Protein Analysis

359

Amino Acids

38.4

Weight (kDa)

4.72

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 262 - 304 2.5e-16 Ring finger domain
zf-RING_11 PF17123 262 - 290 5.2e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 262 - 303 3.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 263 - 303 1.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 263 - 301 2.2e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
AasI GACNNNNNNGTC 2 cut(s) 373, 467
AccBSI CCGCTC 1 cut(s) 669
AccI GTMKAC 1 cut(s) 601
AccII CGCG 3 cut(s) 13, 639, 783
AclWI GGATC 5 cut(s) 206, 219, 331, 555, 568
AcoI YGGCCR 5 cut(s) 549, 705, 715, 778, 924
AcsI RAATTY 2 cut(s) 94, 966
AcyI GRCGYC 2 cut(s) 462, 728
AfiI CCNNNNNNNGG 3 cut(s) 303, 724, 811
AgsI TTSAA 1 cut(s) 883
AhdI GACNNNNNGTC 1 cut(s) 626
AjnI CCWGG 2 cut(s) 338, 961
AluBI AGCT 2 cut(s) 129, 1046
AluI AGCT 2 cut(s) 129, 1046
Alw26I GTCTC 2 cut(s) 475, 507
AlwI GGATC 5 cut(s) 206, 219, 331, 555, 568
AlwNI CAGNNNCTG 1 cut(s) 1046
ApeKI GCWGC 4 cut(s) 129, 504, 1040, 1043
ApoI RAATTY 2 cut(s) 94, 966
AseI ATTAAT 1 cut(s) 80
AspLEI GCGC 2 cut(s) 442, 699
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 670, 772, 1031
AvaII GGWCC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 707
BamHI GGATCC 2 cut(s) 211, 560
BauI CACGAG 1 cut(s) 421
BbvI GCAGC 4 cut(s) 116, 516, 1052, 1055
BccI CCATC 4 cut(s) 176, 352, 376, 749
BceAI ACGGC 4 cut(s) 452, 453, 536, 730
BciT130I CCWGG 2 cut(s) 340, 963
BclI TGATCA 1 cut(s) 1060
BcoDI GTCTC 2 cut(s) 475, 507
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 443
BglII AGATCT 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 340, 963
Bme18I GGWCC 1 cut(s) 336
BmeRI GACNNNNNGTC 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 6 cut(s) 213, 295, 337, 562, 574, 673
BmrFI CCNGG 2 cut(s) 340, 963
BmsI GCATC 4 cut(s) 684, 825, 909, 1056
BplI GAGNNNNNCTC 2 cut(s) 656, 688
Bsa29I ATCGAT 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 1059
BsaHI GRCGYC 2 cut(s) 462, 728
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 3 cut(s) 339, 708, 732
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 3 cut(s) 303, 724, 811
Bse118I RCCGGY 3 cut(s) 724, 909, 922
Bse1I ACTGG 3 cut(s) 215, 805, 1021
Bse8I GATNNNNATC 1 cut(s) 1059
BseBI CCWGG 2 cut(s) 340, 963
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 3 cut(s) 339, 708, 732
BseGI GGATG 1 cut(s) 528
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 3 cut(s) 303, 724, 811
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 3 cut(s) 215, 805, 1021
BseRI GAGGAG 1 cut(s) 656
BseX3I CGGCCG 2 cut(s) 778, 924
BseXI GCAGC 4 cut(s) 116, 516, 1052, 1055
BseYI CCCAGC 1 cut(s) 442
Bsh1236I CGCG 3 cut(s) 13, 639, 783
Bsh1285I CGRYCG 5 cut(s) 496, 511, 598, 781, 927
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 5 cut(s) 496, 511, 598, 781, 927
BsiSI CCGG 7 cut(s) 558, 605, 675, 725, 910, 923, 944
BslFI GGGAC 2 cut(s) 349, 907
BslI CCNNNNNNNGG 3 cut(s) 303, 724, 811
BsmAI GTCTC 2 cut(s) 475, 507
BsmBI CGTCTC 1 cut(s) 475
BsmFI GGGAC 2 cut(s) 349, 907
Bso31I GGTCTC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 732
Bsp68I TCGCGA 1 cut(s) 639
BspCNI CTCAG 1 cut(s) 10
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 3 cut(s) 13, 639, 783
BspLI GGNNCC 6 cut(s) 213, 295, 337, 562, 574, 673
BspPI GGATC 5 cut(s) 206, 219, 331, 555, 568
BspQI GCTCTTC 1 cut(s) 933
BspTNI GGTCTC 1 cut(s) 507
BsrBI CCGCTC 1 cut(s) 669
BsrFI RCCGGY 3 cut(s) 724, 909, 922
BsrI ACTGG 3 cut(s) 215, 805, 1021
BssAI RCCGGY 3 cut(s) 724, 909, 922
BssECI CCNNGG 3 cut(s) 339, 708, 732
BssNI GRCGYC 2 cut(s) 462, 728
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 2 cut(s) 708, 732
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 2 cut(s) 340, 963
Bst4CI ACNGT 3 cut(s) 314, 760, 766
Bst6I CTCTTC 2 cut(s) 933, 996
BstACI GRCGYC 2 cut(s) 462, 728
BstC8I GCNNGC 4 cut(s) 226, 253, 726, 924
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 1 cut(s) 528
BstFNI CGCG 3 cut(s) 13, 639, 783
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 2 cut(s) 442, 699
BstMAI GTCTC 2 cut(s) 475, 507
BstMCI CGRYCG 5 cut(s) 496, 511, 598, 781, 927
BstNI CCWGG 2 cut(s) 340, 963
BstSCI CCNGG 2 cut(s) 338, 961
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 3 cut(s) 13, 639, 783
BstV1I GCAGC 4 cut(s) 116, 516, 1052, 1055
BstX2I RGATCY 4 cut(s) 21, 211, 323, 560
BstYI RGATCY 4 cut(s) 21, 211, 323, 560
BstZI CGGCCG 2 cut(s) 778, 924
Bsu15I ATCGAT 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 732
BtgZI GCGATG 2 cut(s) 395, 727
BtsCI GGATG 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
BtuMI TCGCGA 1 cut(s) 639
Cac8I GCNNGC 4 cut(s) 226, 253, 726, 924
CaiI CAGNNNCTG 1 cut(s) 1046
CciNI GCGGCCGC 1 cut(s) 778
CfoI GCGC 2 cut(s) 442, 699
Cfr10I RCCGGY 3 cut(s) 724, 909, 922
Cfr13I GGNCC 1 cut(s) 336
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 2 cut(s) 470, 717
CviAII CATG 5 cut(s) 451, 541, 652, 733, 751
DdeI CTNAG 1 cut(s) 18
DrdI GACNNNNNNGTC 2 cut(s) 373, 467
DriI GACNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 2 cut(s) 373, 467
EaeI YGGCCR 5 cut(s) 549, 705, 715, 778, 924
EagI CGGCCG 2 cut(s) 778, 924
Eam1104I CTCTTC 2 cut(s) 933, 996
Eam1105I GACNNNNNGTC 1 cut(s) 626
EarI CTCTTC 2 cut(s) 933, 996
EciI GGCGGA 2 cut(s) 693, 834
EclXI CGGCCG 2 cut(s) 778, 924
Eco130I CCWWGG 2 cut(s) 708, 732
Eco31I GGTCTC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 336
Eco52I CGGCCG 2 cut(s) 778, 924
EcoO109I RGGNCCY 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 338, 961
EcoT14I CCWWGG 2 cut(s) 708, 732
ErhI CCWWGG 2 cut(s) 708, 732
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 5 cut(s) 454, 544, 655, 736, 754
FaqI GGGAC 2 cut(s) 349, 907
FatI CATG 5 cut(s) 450, 540, 651, 732, 750
FauI CCCGC 2 cut(s) 166, 729
FbaI TGATCA 1 cut(s) 1060
FblI GTMKAC 1 cut(s) 601
FokI GGATG 1 cut(s) 515
GlaI GCGC 2 cut(s) 441, 698
GsaI CCCAGC 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 443
HapII CCGG 7 cut(s) 558, 605, 675, 725, 910, 923, 944
HgaI GACGC 2 cut(s) 470, 717
HhaI GCGC 2 cut(s) 442, 699
Hin1I GRCGYC 2 cut(s) 462, 728
Hin1II CATG 5 cut(s) 454, 544, 655, 736, 754
Hin6I GCGC 2 cut(s) 440, 697
HinP1I GCGC 2 cut(s) 440, 697
HincII GTYRAC 2 cut(s) 616, 871
HindII GTYRAC 2 cut(s) 616, 871
HinfI GANTC 8 cut(s) 192, 262, 621, 681, 686, 1004, 1022, 1027
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 7 cut(s) 558, 605, 675, 725, 910, 923, 944
HphI GGTGA 3 cut(s) 670, 772, 1031
Hpy166II GTNNAC 5 cut(s) 602, 616, 871, 889, 915
Hpy188I TCNGA 8 cut(s) 136, 460, 525, 577, 693, 792, 1009, 1065
Hpy188III TCNNGA 5 cut(s) 67, 421, 638, 664, 916
Hpy8I GTNNAC 5 cut(s) 602, 616, 871, 889, 915
Hpy99I CGWCG 8 cut(s) 367, 464, 557, 596, 629, 632, 760, 932
HpyAV CCTTC 4 cut(s) 234, 496, 544, 877
HpyCH4III ACNGT 3 cut(s) 314, 760, 766
HpyCH4V TGCA 6 cut(s) 152, 224, 251, 317, 843, 1069
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 2 cut(s) 462, 728
Hsp92II CATG 5 cut(s) 454, 544, 655, 736, 754
HspAI GCGC 2 cut(s) 440, 697
KroI GCCGGC 2 cut(s) 724, 922
KroNI GCCGGC 2 cut(s) 726, 924
Ksp22I TGATCA 1 cut(s) 1060
KspAI GTTAAC 1 cut(s) 616
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 6 cut(s) 69, 137, 578, 607, 643, 677
Lsp1109I GCAGC 4 cut(s) 116, 516, 1052, 1055
LweI GCATC 4 cut(s) 684, 825, 909, 1056
MaeIII GTNAC 3 cut(s) 418, 433, 760
MbiI CCGCTC 1 cut(s) 669
MboII GAAGA 6 cut(s) 481, 947, 950, 961, 964, 1013
MfeI CAATTG 1 cut(s) 701
MflI RGATCY 4 cut(s) 21, 211, 323, 560
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 4 cut(s) 94, 476, 701, 966
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 4 cut(s) 615, 680, 1013, 1021
MmeI TCCRAC 2 cut(s) 483, 1055
Mox20I TGGCCA 1 cut(s) 707
MreI CGCCGGCG 1 cut(s) 724
MroNI GCCGGC 2 cut(s) 724, 922
MscI TGGCCA 1 cut(s) 707
MseI TTAA 2 cut(s) 80, 615
MslI CAYNNNNRTG 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 7 cut(s) 558, 605, 675, 725, 910, 923, 944
MspR9I CCNGG 2 cut(s) 340, 963
MunI CAATTG 1 cut(s) 701
MvaI CCWGG 2 cut(s) 340, 963
MvnI CGCG 3 cut(s) 13, 639, 783
NaeI GCCGGC 2 cut(s) 726, 924
NcoI CCATGG 1 cut(s) 732
NgoMIV GCCGGC 2 cut(s) 724, 922
NlaIII CATG 5 cut(s) 454, 544, 655, 736, 754
NlaIV GGNNCC 6 cut(s) 213, 295, 337, 562, 574, 673
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 3 cut(s) 418, 433, 760
NotI GCGGCCGC 1 cut(s) 778
NruI TCGCGA 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 933
PcsI WCGNNNNNNNCGW 3 cut(s) 286, 362, 636
PdiI GCCGGC 2 cut(s) 726, 924
PfeI GAWTC 4 cut(s) 192, 262, 681, 1022
Ple19I CGATCG 1 cut(s) 598
PleI GAGTC 4 cut(s) 615, 680, 1012, 1021
PpsI GAGTC 4 cut(s) 615, 680, 1012, 1021
PpuMI RGGWCCY 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 80
PsiI TTATAA 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 338, 961
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 2 cut(s) 338, 961
PspN4I GGNNCC 6 cut(s) 213, 295, 337, 562, 574, 673
PspPI GGNCC 1 cut(s) 336
PspPPI RGGWCCY 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 4 cut(s) 21, 211, 323, 560
PvuI CGATCG 1 cut(s) 598
PvuII CAGCTG 1 cut(s) 1046
RruI TCGCGA 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 656
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 2 cut(s) 80, 615
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 4 cut(s) 615, 680, 1013, 1021
ScrFI CCNGG 2 cut(s) 340, 963
SetI ASST 9 cut(s) 34, 131, 295, 341, 377, 519, 816, 888, 1048
SfaNI GCATC 4 cut(s) 684, 825, 909, 1056
SfcI CTRYAG 1 cut(s) 387
SgrAI CRCCGGYG 1 cut(s) 724
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 656
Sse9I AATT 4 cut(s) 94, 476, 701, 966
StyD4I CCNGG 2 cut(s) 338, 961
StyI CCWWGG 2 cut(s) 708, 732
TaaI ACNGT 3 cut(s) 314, 760, 766
TaqI TCGA 9 cut(s) 107, 195, 289, 492, 663, 684, 801, 1012, 1025
TaqII GACCGA 1 cut(s) 525
TasI AATT 4 cut(s) 94, 476, 701, 966
TauI GCSGC 6 cut(s) 16, 258, 467, 672, 780, 783
TfiI GAWTC 4 cut(s) 192, 262, 681, 1022
Tru1I TTAA 2 cut(s) 80, 615
Tru9I TTAA 2 cut(s) 80, 615
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 3 cut(s) 418, 433, 760
TseI GCWGC 4 cut(s) 129, 504, 1040, 1043
Tsp45I GTSAC 3 cut(s) 418, 433, 760
TspDTI ATGAA 2 cut(s) 439, 526
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 336
VspI ATTAAT 1 cut(s) 80
XapI RAATTY 2 cut(s) 94, 966
XmiI GTMKAC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.