Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

53859544 .. 53860161

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG383500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTTCCGACGCCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCCGCGACCGAGACCTCCCTCCGATCATCCCCTTCATCATGGGCTTGGCAGTCGCCGGATCCACGACAGGCTCCGATCAACAGCAAACCGACGATCGTAGACCGGAGCACGTTAACCGACTCGTCGTCGTCAATCGCGACGAGCAAAACATGGTGGTGATCGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCCAATTGGCCAAGGACGGCCACCCGCCGGCGTCCAAGGCCTCCATCGCGGCCATGCCGACGGTGACGGTTGCGGAAAGCGGCCGCGAGTGTCCGATCTGCCTCGACCAGTTTGAGGTCGGCGGAGAGGCCAAAGAGATGCCTTGCAGTCATTTGTTTCACGGGGATTGTGTTGAGAAGTGGTTGAAGGTTCACGGGACTTGCCCGGTCTGCCGGTTCACGATGCCGGCCGACGAGGAAGAAGAGCCGGATAAGAAGAATGAGCCTGGAATTTCTGTCAGCATATTTATAAGGGCGACAAGTGAAGAGTCAGATCGAACTGGTGATTCGACTCCAAGCGCTGATGATGATAGTGATGATGATATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

205

Amino Acids

22.36

Weight (kDa)

4.51

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	111 - 153	1.6e-16	Ring finger domain
zf-RING_11	PF17123	111 - 139	2.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	111 - 152	2.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	112 - 152	3.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	112 - 150	4.8e-07	RING-type zinc-finger
zf-rbx1	PF12678	127 - 153	8.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	4 cut(s)	54, 186, 293, 330
AclWI	GGATC	2 cut(s)	102, 115
AcoI	YGGCCR	5 cut(s)	252, 262, 294, 325, 471
AcsI	RAATTY	1 cut(s)	513
AcyI	GRCGYC	2 cut(s)	12, 275
AfeI	AGCGCT	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	271, 358
AgsI	TTSAA	1 cut(s)	430
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	508
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	22, 54
AlwI	GGATC	2 cut(s)	102, 115
Aor51HI	AGCGCT	1 cut(s)	583
AoxI	GGCC	7 cut(s)	252, 262, 282, 294, 325, 372, 471
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	246, 584
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	217, 319, 578
BalI	TGGCCA	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	22, 54
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
BlsI	GCNGC	5 cut(s)	53, 218, 295, 326, 329
Bme1390I	CCNGG	2 cut(s)	449, 510
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	109, 121, 220
BmrFI	CCNGG	2 cut(s)	449, 510
BmsI	GCATC	3 cut(s)	231, 372, 456
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuMI	CCSGG	1 cut(s)	449
BsaHI	GRCGYC	2 cut(s)	12, 275
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	255, 279
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 358
Bse118I	RCCGGY	3 cut(s)	271, 456, 469
Bse1I	ACTGG	2 cut(s)	352, 568
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	255, 279
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	271, 358
BseNI	ACTGG	2 cut(s)	352, 568
BseX3I	CGGCCG	2 cut(s)	325, 471
Bsh1236I	CGCG	4 cut(s)	54, 186, 293, 330
Bsh1285I	CGRYCG	5 cut(s)	43, 58, 145, 328, 474
BshFI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
BsiEI	CGRYCG	5 cut(s)	43, 58, 145, 328, 474
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	271, 358
BsmAI	GTCTC	2 cut(s)	22, 54
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
BspFNI	CGCG	4 cut(s)	54, 186, 293, 330
BspLI	GGNNCC	3 cut(s)	109, 121, 220
BspPI	GGATC	2 cut(s)	102, 115
BspQI	GCTCTTC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	54
BsrBI	CCGCTC	1 cut(s)	216
BsrFI	RCCGGY	3 cut(s)	271, 456, 469
BsrI	ACTGG	2 cut(s)	352, 568
BssAI	RCCGGY	3 cut(s)	271, 456, 469
BssECI	CCNNGG	2 cut(s)	255, 279
BssMI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
BssNI	GRCGYC	2 cut(s)	12, 275
BssT1I	CCWWGG	2 cut(s)	255, 279
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	307, 313
Bst6I	CTCTTC	2 cut(s)	480, 543
BstACI	GRCGYC	2 cut(s)	12, 275
BstC8I	GCNNGC	2 cut(s)	273, 471
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	4 cut(s)	54, 186, 293, 330
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	246, 584
BstKTI	GATC	7 cut(s)	75, 110, 127, 145, 210, 342, 559
BstMAI	GTCTC	2 cut(s)	22, 54
BstMBI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
BstMCI	CGRYCG	5 cut(s)	43, 58, 145, 328, 474
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 51, 222, 281, 290, 453
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	447, 508
BstUI	CGCG	4 cut(s)	54, 186, 293, 330
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	2 cut(s)	325, 471
BsuRI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	75
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	273, 471
CciNI	GCGGCCGC	1 cut(s)	325
CfoI	GCGC	2 cut(s)	246, 584
Cfr10I	RCCGGY	3 cut(s)	271, 456, 469
CseI	GACGC	2 cut(s)	20, 264
CviAII	CATG	3 cut(s)	88, 199, 298
DpnI	GATC	7 cut(s)	74, 109, 126, 144, 209, 341, 558
DpnII	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
DriI	GACNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	5 cut(s)	252, 262, 294, 325, 471
EagI	CGGCCG	2 cut(s)	325, 471
Eam1104I	CTCTTC	2 cut(s)	480, 543
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	2 cut(s)	480, 543
EciI	GGCGGA	3 cut(s)	38, 240, 381
EclXI	CGGCCG	2 cut(s)	325, 471
Eco130I	CCWWGG	2 cut(s)	255, 279
Eco147I	AGGCCT	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	54
Eco47III	AGCGCT	1 cut(s)	583
Eco52I	CGGCCG	2 cut(s)	325, 471
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	255, 279
ErhI	CCWWGG	2 cut(s)	255, 279
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	3 cut(s)	91, 202, 301
FaiI	YATR	6 cut(s)	89, 200, 299, 527, 533, 608
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	3 cut(s)	87, 198, 297
FauI	CCCGC	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
GlaI	GCGC	2 cut(s)	245, 583
GluI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
HapII	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
HgaI	GACGC	2 cut(s)	20, 264
HhaI	GCGC	2 cut(s)	246, 584
Hin1I	GRCGYC	2 cut(s)	12, 275
Hin1II	CATG	3 cut(s)	91, 202, 301
Hin6I	GCGC	2 cut(s)	244, 582
HinP1I	GCGC	2 cut(s)	244, 582
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	6 cut(s)	168, 228, 233, 551, 569, 574
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
HphI	GGTGA	3 cut(s)	217, 319, 578
Hpy166II	GTNNAC	4 cut(s)	149, 163, 436, 462
Hpy188I	TCNGA	6 cut(s)	10, 72, 124, 240, 339, 556
Hpy188III	TCNNGA	3 cut(s)	185, 211, 463
Hpy8I	GTNNAC	4 cut(s)	149, 163, 436, 462
Hpy99I	CGWCG	7 cut(s)	14, 143, 176, 179, 191, 307, 479
HpyAV	CCTTC	3 cut(s)	43, 91, 424
HpyCH4III	ACNGT	2 cut(s)	307, 313
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	390, 610
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 51, 222, 281, 290, 453
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	2 cut(s)	12, 275
Hsp92II	CATG	3 cut(s)	91, 202, 301
HspAI	GCGC	2 cut(s)	244, 582
KroI	GCCGGC	2 cut(s)	271, 469
KroNI	GCCGGC	2 cut(s)	273, 471
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	3 cut(s)	125, 154, 224
LweI	GCATC	3 cut(s)	231, 372, 456
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	7 cut(s)	74, 109, 126, 144, 209, 341, 558
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
MboII	GAAGA	5 cut(s)	28, 494, 497, 511, 560
MfeI	CAATTG	1 cut(s)	248
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	3 cut(s)	23, 248, 513
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	4 cut(s)	162, 227, 560, 568
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	8 cut(s)	56, 74, 78, 295, 352, 356, 364, 472
Mox20I	TGGCCA	1 cut(s)	254
MreI	CGCCGGCG	1 cut(s)	271
MroNI	GCCGGC	2 cut(s)	271, 469
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
MspR9I	CCNGG	2 cut(s)	449, 510
MunI	CAATTG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	4 cut(s)	54, 186, 293, 330
MwoI	GCNNNNNNNGC	6 cut(s)	11, 51, 222, 281, 290, 453
NaeI	GCCGGC	2 cut(s)	273, 471
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
NgoMIV	GCCGGC	2 cut(s)	271, 469
NlaIII	CATG	3 cut(s)	91, 202, 301
NlaIV	GGNNCC	3 cut(s)	109, 121, 220
NmuCI	GTSAC	1 cut(s)	307
NotI	GCGGCCGC	1 cut(s)	325
NruI	TCGCGA	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	2 cut(s)	273, 471
PfeI	GAWTC	2 cut(s)	228, 569
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	53, 218, 295, 326, 329
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	4 cut(s)	162, 227, 559, 568
PpsI	GAGTC	4 cut(s)	162, 227, 559, 568
PsiI	TTATAA	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	109, 121, 220
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	145
RruI	TCGCGA	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
Sau3AI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
SchI	GAGTC	4 cut(s)	162, 227, 560, 568
ScrFI	CCNGG	2 cut(s)	449, 510
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	66, 162, 363, 435
SfaNI	GCATC	3 cut(s)	231, 372, 456
SgrAI	CRCCGGYG	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	23, 248, 513
SseBI	AGGCCT	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	447, 508
StyI	CCWWGG	2 cut(s)	255, 279
TaaI	ACNGT	2 cut(s)	307, 313
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	6 cut(s)	39, 210, 231, 348, 559, 572
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	23, 248, 513
TauI	GCSGC	5 cut(s)	54, 219, 296, 327, 330
TfiI	GAWTC	2 cut(s)	228, 569
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.