Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Forward (+)

30518534 .. 30524016

Gene Structure 5483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGCTACCGATGGGTACAAACGTTCACAAGTTTCATCAGCTCCGCCCCGAAAATTAAGTGTCCAAAAGTTTGCGGAAGCGCGAGCTTCAGAACTTGAGACGCTCCACACAGTTGTATCGGACCGGCTGAACAATGATTTCCGGTCTCAAAGAAGCAAAAGAAGAAGAACCACTGCTTATGACAATCAAGCCGCAAAAAGGAGATGTCGAAAAAAGCAAAAGCACGGAGTAGGTGATCAAAGCAATGCTTTGCCTGCAGAGAAAGATGACAAGAATGTTCCTCGTCGCATTCGTCGGAGAGCTGAGCTTAAAAAGAACCTTCATACGGGTTTTTGTACCTCAGGGGATGGAACAAAGAGGCTTAGAACACATGTTTGGCATGCGAAGCGGTTCACGATGACAAAGCTCTGGGGTTATTATCTTCCCCTAGGATTGCAGGGCAGGGGAAGGGGTTCCAGAGCTGTCCTGAAATGGTTCAAAGATGGAGTGTTTGCCCATGATGCAAGCTATCATGTAGCTATGCAATTGGAGGGTACAGAGGAATCATTACTATCAGTGTTAAGAATGGTATTGGTGCCTTCTCCATCAGCTCGTTCCGAAGATATTTCCCGTTCCATTATTTCAGGGGCCATATATGATACTGCTATGCTTCATCAGTTGGGAGCCCCATGTTCAACCCCAATTGCACCTGCAACCTATATGTGGCGACCCTCTTGCCAACGGGATAGAGATAATGATGCTTCTGCTGTCTATGATGGTGGTGCATGTAATGGTCTAGAGGTTAAAGAGCGCTCGTCTACCTTTCGCCAGCTTTGGGTGTGGATACATGCTTCTGCTTTCGCTGCAGGATATGATGCTCTCAAATTAGCTTGCCAAAAAGAGATGGAAGAGAGCGGCAGCATGATGAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTGCTCCAAAGGACATTGTGCCCTGTTACAAGAAGAAAGGATCATACTTCGGCATTGAAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACGAAAGACTGCATGTGCTTCAGACTCAGGTTCTGCTAGTATAGTAGCTGATGTACAAGGAACTGAAGACAAAGAGCATGCTGTCCATGGAATTATTTCAGAGAAGAAAAAAGAGTTGCTTTCCTTGATGGGGTCAGAACTCGAAGGTACTAGCATGCTTGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAAAATTTCTGCCTTGATGAATCAAGTTCGAGGGTACTAAATACTTCAACCAATTTGCAGTGCAGATCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGATGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCACGTGATAGGTTTGAGAGAGAGGCACTGGATTTCATGTGACGTAGGATTGCCATGTTTTCCTTCGGATTTCCCTGATTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTGCCGCCTCCAATGTTAAAGAGGAACTTCGTCCTCCAGCACAAAGACCTTTGAGGGTTCCCATTTTACCCCCATGGAATAGCATCCAAGTTTCTTTTAGGGAAGGACCCACCAAAATGCGAAATGCTGAAACTTTTAGACTGGAAAACGGGATCAGAAGCAATTCATCATCTAACTCGGAGTGTGACAATTATGATGTTACATTCTGTCCTGGTAATTTGTTTGATGGTTTTGTAGCACGGACATCTTTTTCACTGACAAATTTCTTGAATGAATTCCAAGGCTGTAATTTGCGCCTATGTCCTCATGTGACCGATAAGCCGACTAGCTTTACTAGGTTTATGAGGGATGAAAGCAAGCTTGGGCCGGGCCAAAATGGGATCACTAAATTTAGTTACAACCACAAGTTATGCTTTGTAAGGGTATTTCTCCATGCTTACAAGGAAGGGTTTTTTGAAGAGGGAGCAGTTGTTTGTGCACCTCAAGTGACTGACATCTCACTCTGGACAAGATCAGAGAGTTTTGATGCAGGACTTCAAGTTCCTCAATCTGCTGTGACATCTTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCGGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCATATTAGAGGGGAACAATGGGATATGATGCCAGTTAAACGGAGACGGAAGGAAATATATGTCCTCGTGAGGAATTTGAGATCCTCAGCATATAGACTAGCTCTTGCCACTATCGTCCTGGAAGATCAGGAAGAAGATGTTGAATTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

859

Amino Acids

96.74

Weight (kDa)

8.97

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_N	PF06978	121 - 178	2.3e-10	Ribonucleases P/MRP protein subunit POP1, N-terminal
POPLD	PF08170	508 - 584	2.2e-16	POPLD (NUC188) domain
POP1_C	PF22770	758 - 848	7.3e-08	POP1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	574
AccBSI	CCGCTC	1 cut(s)	894
AccI	GTMKAC	1 cut(s)	797
AccII	CGCG	2 cut(s)	82, 935
AciI	CCGC	6 cut(s)	44, 74, 192, 388, 894, 1707
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	7 cut(s)	961, 1017, 1127, 1140, 1862, 2090, 2502
AcsI	RAATTY	8 cut(s)	907, 1324, 1408, 1963, 1976, 2090, 2500, 2570
AcuI	CTGAAG	4 cut(s)	72, 1065, 1158, 1239
AcvI	CACGTG	1 cut(s)	1594
AfaI	GTAC	7 cut(s)	17, 337, 535, 1209, 1303, 1440, 2418
AfeI	AGCGCT	1 cut(s)	791
AfiI	CCNNNNNNNGG	7 cut(s)	198, 325, 702, 814, 1284, 1548, 2308
AflII	CTTAAG	1 cut(s)	1688
AflIII	ACRYGT	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	1380, 1912, 2544
AjuI	GAANNNNNNNTTGG	4 cut(s)	358, 390, 2046, 2078
AloI	GAACNNNNNNTCC	2 cut(s)	2226, 2258
Alw21I	GWGCWC	1 cut(s)	2182
Alw26I	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
Alw44I	GTGCAC	1 cut(s)	2178
AlwI	GGATC	7 cut(s)	961, 1017, 1127, 1140, 1862, 2090, 2502
AlwNI	CAGNNNCTG	2 cut(s)	1043, 1187
Aor51HI	AGCGCT	1 cut(s)	791
AoxI	GGCC	5 cut(s)	627, 925, 2066, 2071, 2342
ApaLI	GTGCAC	1 cut(s)	2178
ApeKI	GCWGC	3 cut(s)	842, 897, 1040
ApoI	RAATTY	8 cut(s)	907, 1324, 1408, 1963, 1976, 2090, 2500, 2570
Asp700I	GAANNNNTTC	8 cut(s)	389, 451, 473, 911, 1095, 1249, 1864, 1976
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	82, 792, 1998
AspS9I	GGNCC	6 cut(s)	121, 627, 925, 1808, 2066, 2071
AsuC2I	CCSGG	1 cut(s)	2070
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	121, 1808
AvrII	CCTAGG	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	340
BaeGI	GKGCMC	2 cut(s)	992, 2182
BaeI	ACNNNNGTAYC	4 cut(s)	7, 40, 99, 132
BamHI	GGATCC	1 cut(s)	1132
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	667, 1591
BauI	CACGAG	1 cut(s)	2492
BbrPI	CACGTG	1 cut(s)	1594
BbsI	GAAGAC	3 cut(s)	1098, 1227, 2393
Bbv12I	GWGCWC	1 cut(s)	2182
BbvCI	CCTCAGC	1 cut(s)	2512
BbvI	GCAGC	3 cut(s)	829, 909, 1027
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	3 cut(s)	1382, 1914, 2546
BciVI	GTATCC	1 cut(s)	816
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	2070
BcoDI	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
BfaI	CTAG	7 cut(s)	428, 776, 1191, 1305, 2028, 2037, 2525
BfmI	CTRYAG	3 cut(s)	255, 843, 2346
BfoI	RGCGCY	1 cut(s)	793
BfrI	CTTAAG	1 cut(s)	1688
BfuAI	ACCTGC	1 cut(s)	697
BfuI	GTATCC	1 cut(s)	816
BglII	AGATCT	1 cut(s)	1469
BisI	GCNGC	6 cut(s)	192, 843, 895, 898, 1041, 1707
BlnI	CCTAGG	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	6 cut(s)	193, 844, 896, 899, 1042, 1708
BmcAI	AGTACT	1 cut(s)	2418
Bme1390I	CCNGG	4 cut(s)	1382, 1914, 2070, 2546
Bme18I	GGWCC	2 cut(s)	121, 1808
BmgT120I	GGNCC	6 cut(s)	121, 627, 925, 1808, 2066, 2071
BmiI	GGNNCC	7 cut(s)	454, 576, 628, 664, 1134, 1761, 1810
BmrFI	CCNGG	4 cut(s)	1382, 1914, 2070, 2546
BmsI	GCATC	6 cut(s)	490, 727, 844, 1794, 2218, 2445
BpiI	GAAGAC	3 cut(s)	1098, 1227, 2393
BpmI	CTGGAG	3 cut(s)	1035, 1341, 1722
Bpu10I	CCTNAGC	1 cut(s)	2512
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	4 cut(s)	116, 941, 1564, 2169
BpuMI	CCSGG	1 cut(s)	2070
BsaAI	YACGTR	1 cut(s)	1594
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	5 cut(s)	427, 1240, 1581, 1775, 1981
BsaWI	WCCGGW	2 cut(s)	141, 2308
BsaXI	ACNNNNNCTCC	2 cut(s)	2157, 2187
Bsc4I	CCNNNNNNNGG	7 cut(s)	198, 325, 702, 814, 1284, 1548, 2308
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	5 cut(s)	1358, 1622, 1848, 2368, 2459
Bse21I	CCTNAGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	1382, 1914, 2546
BseDI	CCNNGG	5 cut(s)	427, 1240, 1581, 1775, 1981
BseGI	GGATG	5 cut(s)	352, 1339, 1529, 1785, 2056
BseLI	CCNNNNNNNGG	7 cut(s)	198, 325, 702, 814, 1284, 1548, 2308
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	4 cut(s)	294, 354, 1194, 2526
BseNI	ACTGG	5 cut(s)	1358, 1622, 1848, 2368, 2459
BseSI	GKGCMC	2 cut(s)	992, 2182
BseXI	GCAGC	3 cut(s)	829, 909, 1027
BseYI	CCCAGC	1 cut(s)	1548
BsgI	GTGCAG	1 cut(s)	1486
Bsh1236I	CGCG	2 cut(s)	82, 935
BshFI	GGCC	5 cut(s)	629, 927, 2068, 2073, 2344
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	2182
BsiSI	CCGG	4 cut(s)	124, 142, 2069, 2309
BslI	CCNNNNNNNGG	7 cut(s)	198, 325, 702, 814, 1284, 1548, 2308
BsmAI	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
BsmBI	CGTCTC	3 cut(s)	92, 1582, 2464
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	5 cut(s)	629, 927, 2068, 2073, 2344
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	667, 992, 1591, 2182
Bsp1407I	TGTACA	1 cut(s)	1207
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	2 cut(s)	1240, 1775
Bsp68I	TCGCGA	1 cut(s)	935
BspACI	CCGC	6 cut(s)	44, 74, 192, 388, 894, 1707
BspANI	GGCC	5 cut(s)	629, 927, 2068, 2073, 2344
BspCNI	CTCAG	4 cut(s)	295, 353, 1193, 2525
BspFNI	CGCG	2 cut(s)	82, 935
BspLI	GGNNCC	7 cut(s)	454, 576, 628, 664, 1134, 1761, 1810
BspMAI	CTGCAG	2 cut(s)	259, 847
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	7 cut(s)	961, 1017, 1127, 1140, 1862, 2090, 2502
BspT107I	GGYRCC	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	1688
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	894
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	1207
BsrI	ACTGG	5 cut(s)	1358, 1622, 1848, 2368, 2459
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	5 cut(s)	427, 1240, 1581, 1775, 1981
BssSI	CACGAG	1 cut(s)	2492
BssT1I	CCWWGG	5 cut(s)	427, 1240, 1581, 1775, 1981
Bst2BI	CACGAG	1 cut(s)	2492
Bst2UI	CCWGG	3 cut(s)	1382, 1914, 2546
Bst4CI	ACNGT	4 cut(s)	112, 1343, 2320, 2392
Bst6I	CTCTTC	4 cut(s)	882, 1022, 1359, 2154
BstAFI	CTTAAG	1 cut(s)	1688
BstAUI	TGTACA	1 cut(s)	1207
BstBAI	YACGTR	1 cut(s)	1594
BstDEI	CTNAG	7 cut(s)	303, 340, 362, 1068, 1121, 1180, 2512
BstDSI	CCRYGG	2 cut(s)	1240, 1775
BstF5I	GGATG	5 cut(s)	352, 1339, 1529, 1785, 2056
BstFNI	CGCG	2 cut(s)	82, 935
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	3 cut(s)	82, 792, 1998
BstMAI	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 842, 1046
BstNI	CCWGG	3 cut(s)	1382, 1914, 2546
BstNSI	RCATGY	8 cut(s)	374, 383, 768, 830, 1144, 1170, 1235, 1312
BstSCI	CCNGG	4 cut(s)	1380, 1912, 2068, 2544
BstSFI	CTRYAG	3 cut(s)	255, 843, 2346
BstSLI	GKGCMC	2 cut(s)	992, 2182
BstUI	CGCG	2 cut(s)	82, 935
BstV1I	GCAGC	3 cut(s)	829, 909, 1027
BstV2I	GAAGAC	3 cut(s)	1098, 1227, 2393
BstX2I	RGATCY	3 cut(s)	1132, 1469, 2507
BstYI	RGATCY	3 cut(s)	1132, 1469, 2507
Bsu36I	CCTNAGG	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	816
BsuRI	GGCC	5 cut(s)	629, 927, 2068, 2073, 2344
BtgI	CCRYGG	2 cut(s)	1240, 1775
BtsCI	GGATG	5 cut(s)	352, 1339, 1529, 1785, 2056
BtsI	GCAGTG	4 cut(s)	171, 1116, 1469, 1678
BtuMI	TCGCGA	1 cut(s)	935
BveI	ACCTGC	1 cut(s)	697
CaiI	CAGNNNCTG	2 cut(s)	1043, 1187
CfoI	GCGC	3 cut(s)	82, 792, 1998
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	6 cut(s)	121, 627, 925, 1808, 2066, 2071
CpoI	CGGWCCG	1 cut(s)	121
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	7 cut(s)	16, 336, 534, 1208, 1302, 1439, 2417
CspCI	CAANNNNNGTGG	2 cut(s)	2350, 2385
CspI	CGGWCCG	1 cut(s)	121
CviQI	GTAC	7 cut(s)	16, 336, 534, 1208, 1302, 1439, 2417
DdeI	CTNAG	7 cut(s)	303, 340, 362, 1068, 1121, 1180, 2512
Eam1104I	CTCTTC	4 cut(s)	882, 1022, 1359, 2154
EarI	CTCTTC	4 cut(s)	882, 1022, 1359, 2154
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	5 cut(s)	427, 1240, 1581, 1775, 1981
Eco24I	GRGCYC	2 cut(s)	667, 1591
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	121, 1808
Eco47III	AGCGCT	1 cut(s)	791
Eco57I	CTGAAG	4 cut(s)	72, 1065, 1158, 1239
Eco72I	CACGTG	1 cut(s)	1594
Eco81I	CCTNAGG	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	1808
EcoRI	GAATTC	1 cut(s)	1976
EcoRII	CCWGG	3 cut(s)	1380, 1912, 2544
EcoT14I	CCWWGG	5 cut(s)	427, 1240, 1581, 1775, 1981
EcoT38I	GRGCYC	2 cut(s)	667, 1591
ErhI	CCWWGG	5 cut(s)	427, 1240, 1581, 1775, 1981
Esp3I	CGTCTC	3 cut(s)	92, 1582, 2464
FalI	AAGNNNNNCTT	8 cut(s)	232, 264, 1257, 1289, 1713, 1745, 2099, 2131
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	797
Fnu4HI	GCNGC	6 cut(s)	192, 843, 895, 898, 1041, 1707
FokI	GGATG	5 cut(s)	359, 1346, 1536, 1772, 2063
FriOI	GRGCYC	2 cut(s)	667, 1591
Fsp4HI	GCNGC	6 cut(s)	192, 843, 895, 898, 1041, 1707
FspBI	CTAG	7 cut(s)	428, 776, 1191, 1305, 2028, 2037, 2525
GlaI	GCGC	3 cut(s)	81, 791, 1997
GluI	GCNGC	6 cut(s)	192, 843, 895, 898, 1041, 1707
GsaI	CCCAGC	1 cut(s)	1552
GsuI	CTGGAG	3 cut(s)	1035, 1341, 1722
HaeII	RGCGCY	1 cut(s)	793
HaeIII	GGCC	5 cut(s)	629, 927, 2068, 2073, 2344
HapII	CCGG	4 cut(s)	124, 142, 2069, 2309
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	3 cut(s)	82, 792, 1998
Hin6I	GCGC	3 cut(s)	80, 790, 1996
HinP1I	GCGC	3 cut(s)	80, 790, 1996
HincII	GTYRAC	1 cut(s)	1339
HindII	GTYRAC	1 cut(s)	1339
HindIII	AAGCTT	2 cut(s)	2060, 2400
HinfI	GANTC	7 cut(s)	542, 1058, 1125, 1178, 1424, 1567, 2330
HpaI	GTTAAC	1 cut(s)	1339
HpaII	CCGG	4 cut(s)	124, 142, 2069, 2309
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	5 cut(s)	26, 393, 798, 1339, 2180
Hpy8I	GTNNAC	5 cut(s)	26, 393, 798, 1339, 2180
Hpy99I	CGWCG	2 cut(s)	288, 297
HpyCH4III	ACNGT	4 cut(s)	112, 1343, 2320, 2392
HpyCH4IV	ACGT	3 cut(s)	22, 1593, 1632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 842, 1046
HpyF3I	CTNAG	7 cut(s)	303, 340, 362, 1068, 1121, 1180, 2512
HpySE526I	ACGT	3 cut(s)	22, 1593, 1632
HspAI	GCGC	3 cut(s)	80, 790, 1996
Ksp22I	TGATCA	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	1339
LmnI	GCTCC	7 cut(s)	46, 108, 662, 978, 1054, 2165, 2379
Lsp1109I	GCAGC	3 cut(s)	829, 909, 1027
LweI	GCATC	6 cut(s)	490, 727, 844, 1794, 2218, 2445
MaeI	CTAG	7 cut(s)	428, 776, 1191, 1305, 2028, 2037, 2525
MaeII	ACGT	3 cut(s)	22, 1593, 1632
MaeIII	GTNAC	9 cut(s)	994, 1628, 1886, 1900, 2011, 2096, 2188, 2257, 2356
MbiI	CCGCTC	1 cut(s)	894
MfeI	CAATTG	2 cut(s)	524, 681
MflI	RGATCY	3 cut(s)	1132, 1469, 2507
MhlI	GDGCHC	4 cut(s)	667, 992, 1591, 2182
MlyI	GAGTC	2 cut(s)	1134, 1172
MmeI	TCCRAC	1 cut(s)	275
MroXI	GAANNNNTTC	8 cut(s)	389, 451, 473, 911, 1095, 1249, 1864, 1976
MseI	TTAA	8 cut(s)	56, 309, 560, 783, 1338, 1689, 1719, 2463
MslI	CAYNNNNRTG	2 cut(s)	1681, 1817
MspA1I	CMGCKG	1 cut(s)	1040
MspCI	CTTAAG	1 cut(s)	1688
MspI	CCGG	4 cut(s)	124, 142, 2069, 2309
MspR9I	CCNGG	4 cut(s)	1382, 1914, 2070, 2546
MunI	CAATTG	2 cut(s)	524, 681
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	3 cut(s)	1382, 1914, 2546
MvnI	CGCG	2 cut(s)	82, 935
MwoI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 842, 1046
NciI	CCSGG	1 cut(s)	2070
NcoI	CCATGG	2 cut(s)	1240, 1775
NlaIV	GGNNCC	7 cut(s)	454, 576, 628, 664, 1134, 1761, 1810
NmuCI	GTSAC	6 cut(s)	1628, 1886, 2011, 2188, 2257, 2356
NruI	TCGCGA	1 cut(s)	935
NspI	RCATGY	8 cut(s)	374, 383, 768, 830, 1144, 1170, 1235, 1312
PaeI	GCATGC	3 cut(s)	383, 1235, 1312
PaqCI	CACCTGC	1 cut(s)	697
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	8 cut(s)	389, 451, 473, 911, 1095, 1249, 1864, 1976
PfeI	GAWTC	5 cut(s)	542, 1058, 1424, 1567, 2330
PflFI	GACNNNGTC	1 cut(s)	2318
PfoI	TCCNGGA	1 cut(s)	2544
PkrI	GCNGC	6 cut(s)	193, 844, 896, 899, 1042, 1708
PleI	GAGTC	2 cut(s)	1133, 1172
PmaCI	CACGTG	1 cut(s)	1594
PmlI	CACGTG	1 cut(s)	1594
PpsI	GAGTC	2 cut(s)	1133, 1172
Ppu21I	YACGTR	1 cut(s)	1594
PpuMI	RGGWCCY	1 cut(s)	1808
PscI	ACATGT	1 cut(s)	370
Psp1406I	AACGTT	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	1808
Psp6I	CCWGG	3 cut(s)	1380, 1912, 2544
PspCI	CACGTG	1 cut(s)	1594
PspFI	CCCAGC	1 cut(s)	1548
PspGI	CCWGG	3 cut(s)	1380, 1912, 2544
PspN4I	GGNNCC	7 cut(s)	454, 576, 628, 664, 1134, 1761, 1810
PspPI	GGNCC	6 cut(s)	121, 627, 925, 1808, 2066, 2071
PspPPI	RGGWCCY	1 cut(s)	1808
PsrI	GAACNNNNNNTAC	2 cut(s)	2289, 2321
PstI	CTGCAG	2 cut(s)	259, 847
PstNI	CAGNNNCTG	2 cut(s)	1043, 1187
PsuI	RGATCY	3 cut(s)	1132, 1469, 2507
PsyI	GACNNNGTC	1 cut(s)	2318
PvuII	CAGCTG	1 cut(s)	1040
RruI	TCGCGA	1 cut(s)	935
RsaI	GTAC	7 cut(s)	17, 337, 535, 1209, 1303, 1440, 2418
RsaNI	GTAC	7 cut(s)	16, 336, 534, 1208, 1302, 1439, 2417
RseI	CAYNNNNRTG	2 cut(s)	1681, 1817
Rsr2I	CGGWCCG	1 cut(s)	121
RsrII	CGGWCCG	1 cut(s)	121
SaqAI	TTAA	8 cut(s)	56, 309, 560, 783, 1338, 1689, 1719, 2463
SatI	GCNGC	6 cut(s)	192, 843, 895, 898, 1041, 1707
Sau96I	GGNCC	6 cut(s)	121, 627, 925, 1808, 2066, 2071
ScaI	AGTACT	1 cut(s)	2418
SchI	GAGTC	2 cut(s)	1134, 1172
ScrFI	CCNGG	4 cut(s)	1382, 1914, 2070, 2546
SduI	GDGCHC	4 cut(s)	667, 992, 1591, 2182
SfaNI	GCATC	6 cut(s)	490, 727, 844, 1794, 2218, 2445
SfcI	CTRYAG	3 cut(s)	255, 843, 2346
SinI	GGWCC	2 cut(s)	121, 1808
SmiMI	CAYNNNNRTG	2 cut(s)	1681, 1817
SmlI	CTYRAG	5 cut(s)	95, 920, 1543, 1688, 2184
SmoI	CTYRAG	5 cut(s)	95, 920, 1543, 1688, 2184
SphI	GCATGC	3 cut(s)	383, 1235, 1312
SsiI	CCGC	6 cut(s)	44, 74, 192, 388, 894, 1707
SspMI	CTAG	7 cut(s)	428, 776, 1191, 1305, 2028, 2037, 2525
StyD4I	CCNGG	4 cut(s)	1380, 1912, 2068, 2544
StyI	CCWWGG	5 cut(s)	427, 1240, 1581, 1775, 1981
TaaI	ACNGT	4 cut(s)	112, 1343, 2320, 2392
TaiI	ACGT	3 cut(s)	25, 1596, 1635
TaqI	TCGA	4 cut(s)	208, 1296, 1433, 2374
TaqII	GACCGA	1 cut(s)	2030
TatI	WGTACW	2 cut(s)	1207, 2416
TauI	GCSGC	3 cut(s)	194, 897, 1709
TfiI	GAWTC	5 cut(s)	542, 1058, 1424, 1567, 2330
Tru1I	TTAA	8 cut(s)	56, 309, 560, 783, 1338, 1689, 1719, 2463
Tru9I	TTAA	8 cut(s)	56, 309, 560, 783, 1338, 1689, 1719, 2463
TseFI	GTSAC	6 cut(s)	1628, 1886, 2011, 2188, 2257, 2356
TseI	GCWGC	3 cut(s)	842, 897, 1040
Tsp45I	GTSAC	6 cut(s)	1628, 1886, 2011, 2188, 2257, 2356
TspGWI	ACGGA	5 cut(s)	240, 1518, 1957, 2482, 2488
Tth111I	GACNNNGTC	1 cut(s)	2318
Vha464I	CTTAAG	1 cut(s)	1688
VneI	GTGCAC	1 cut(s)	2178
VpaK11BI	GGWCC	2 cut(s)	121, 1808
XapI	RAATTY	8 cut(s)	907, 1324, 1408, 1963, 1976, 2090, 2500, 2570
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	8 cut(s)	374, 383, 768, 830, 1144, 1170, 1235, 1312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2542
XmaJI	CCTAGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	797
XmnI	GAANNNNTTC	8 cut(s)	389, 451, 473, 911, 1095, 1249, 1864, 1976
XspI	CTAG	7 cut(s)	428, 776, 1191, 1305, 2028, 2037, 2525
ZrmI	AGTACT	1 cut(s)	2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.