Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

64761061 .. 64761678

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG398200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTTCCGACGCCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCCGCGACCGAGACCTCCCTCCGATCATCCCCTTCATCATGGGCTTGGCAGTCGCCGGATCCACGACAGGCTCCGATCAACAGCAAACCGACGATCGTAGACCGGAGCACGTTAACCGACTCGTCGTCGTCAATCGCGACGAGCAAAACATGGTGGTGATCGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCCAATTGGCCAAGGACGGCCACCCGCCGGCGTCCAAGGCCTCCATCGCGGCCATGCCGACGGTGACGGTTGCGGAAAGCGGCCGCGAGTGTCCGATCTGCCTCGACCAGTTTGAGGTCGGCGGAGAGGCCAAAGAGATGCCTTGCAGTCATTTGTTTCACGGGGATTGTGTTGAGAAGTGGTTGAAGGTTCACGGGACTTGCCCGGTCTGCCGGTTCACGATGCCGGCCGACGAGGAAGAAGAGCCGGATAAGAAGAATGAGCCTGGAATTTCTGTCAGCATATTTATAAGGGCGACAAGTGAAGAGTCAGATCGAACTGGTGATTCGACTCCAAGCGCTGATGATGATAGTGATGATGATATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

205

Amino Acids

22.36

Weight (kDa)

4.51

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	111 - 153	1.6e-16	Ring finger domain
zf-RING_11	PF17123	111 - 139	2.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	111 - 152	2.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	112 - 152	3.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	112 - 150	4.8e-07	RING-type zinc-finger
zf-rbx1	PF12678	127 - 153	8.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	4 cut(s)	54, 186, 293, 330
AclWI	GGATC	2 cut(s)	102, 115
AcoI	YGGCCR	5 cut(s)	252, 262, 294, 325, 471
AcsI	RAATTY	1 cut(s)	513
AcyI	GRCGYC	2 cut(s)	12, 275
AfeI	AGCGCT	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	271, 358
AgsI	TTSAA	1 cut(s)	430
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	508
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	22, 54
AlwI	GGATC	2 cut(s)	102, 115
Aor51HI	AGCGCT	1 cut(s)	583
AoxI	GGCC	7 cut(s)	252, 262, 282, 294, 325, 372, 471
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	246, 584
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	217, 319, 578
BalI	TGGCCA	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	22, 54
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
BlsI	GCNGC	5 cut(s)	53, 218, 295, 326, 329
Bme1390I	CCNGG	2 cut(s)	449, 510
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	109, 121, 220
BmrFI	CCNGG	2 cut(s)	449, 510
BmsI	GCATC	3 cut(s)	231, 372, 456
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuMI	CCSGG	1 cut(s)	449
BsaHI	GRCGYC	2 cut(s)	12, 275
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	255, 279
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 358
Bse118I	RCCGGY	3 cut(s)	271, 456, 469
Bse1I	ACTGG	2 cut(s)	352, 568
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	255, 279
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	271, 358
BseNI	ACTGG	2 cut(s)	352, 568
BseX3I	CGGCCG	2 cut(s)	325, 471
Bsh1236I	CGCG	4 cut(s)	54, 186, 293, 330
Bsh1285I	CGRYCG	5 cut(s)	43, 58, 145, 328, 474
BshFI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
BsiEI	CGRYCG	5 cut(s)	43, 58, 145, 328, 474
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	271, 358
BsmAI	GTCTC	2 cut(s)	22, 54
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
BspFNI	CGCG	4 cut(s)	54, 186, 293, 330
BspLI	GGNNCC	3 cut(s)	109, 121, 220
BspPI	GGATC	2 cut(s)	102, 115
BspQI	GCTCTTC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	54
BsrBI	CCGCTC	1 cut(s)	216
BsrFI	RCCGGY	3 cut(s)	271, 456, 469
BsrI	ACTGG	2 cut(s)	352, 568
BssAI	RCCGGY	3 cut(s)	271, 456, 469
BssECI	CCNNGG	2 cut(s)	255, 279
BssMI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
BssNI	GRCGYC	2 cut(s)	12, 275
BssT1I	CCWWGG	2 cut(s)	255, 279
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	307, 313
Bst6I	CTCTTC	2 cut(s)	480, 543
BstACI	GRCGYC	2 cut(s)	12, 275
BstC8I	GCNNGC	2 cut(s)	273, 471
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	4 cut(s)	54, 186, 293, 330
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	246, 584
BstKTI	GATC	7 cut(s)	75, 110, 127, 145, 210, 342, 559
BstMAI	GTCTC	2 cut(s)	22, 54
BstMBI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
BstMCI	CGRYCG	5 cut(s)	43, 58, 145, 328, 474
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 51, 222, 281, 290, 453
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	447, 508
BstUI	CGCG	4 cut(s)	54, 186, 293, 330
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	2 cut(s)	325, 471
BsuRI	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	75
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	273, 471
CciNI	GCGGCCGC	1 cut(s)	325
CfoI	GCGC	2 cut(s)	246, 584
Cfr10I	RCCGGY	3 cut(s)	271, 456, 469
CseI	GACGC	2 cut(s)	20, 264
CviAII	CATG	3 cut(s)	88, 199, 298
DpnI	GATC	7 cut(s)	74, 109, 126, 144, 209, 341, 558
DpnII	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
DriI	GACNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	5 cut(s)	252, 262, 294, 325, 471
EagI	CGGCCG	2 cut(s)	325, 471
Eam1104I	CTCTTC	2 cut(s)	480, 543
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	2 cut(s)	480, 543
EciI	GGCGGA	3 cut(s)	38, 240, 381
EclXI	CGGCCG	2 cut(s)	325, 471
Eco130I	CCWWGG	2 cut(s)	255, 279
Eco147I	AGGCCT	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	54
Eco47III	AGCGCT	1 cut(s)	583
Eco52I	CGGCCG	2 cut(s)	325, 471
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	255, 279
ErhI	CCWWGG	2 cut(s)	255, 279
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	3 cut(s)	91, 202, 301
FaiI	YATR	6 cut(s)	89, 200, 299, 527, 533, 608
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	3 cut(s)	87, 198, 297
FauI	CCCGC	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
GlaI	GCGC	2 cut(s)	245, 583
GluI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	7 cut(s)	254, 264, 284, 296, 327, 374, 473
HapII	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
HgaI	GACGC	2 cut(s)	20, 264
HhaI	GCGC	2 cut(s)	246, 584
Hin1I	GRCGYC	2 cut(s)	12, 275
Hin1II	CATG	3 cut(s)	91, 202, 301
Hin6I	GCGC	2 cut(s)	244, 582
HinP1I	GCGC	2 cut(s)	244, 582
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	6 cut(s)	168, 228, 233, 551, 569, 574
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
HphI	GGTGA	3 cut(s)	217, 319, 578
Hpy166II	GTNNAC	4 cut(s)	149, 163, 436, 462
Hpy188I	TCNGA	6 cut(s)	10, 72, 124, 240, 339, 556
Hpy188III	TCNNGA	3 cut(s)	185, 211, 463
Hpy8I	GTNNAC	4 cut(s)	149, 163, 436, 462
Hpy99I	CGWCG	7 cut(s)	14, 143, 176, 179, 191, 307, 479
HpyAV	CCTTC	3 cut(s)	43, 91, 424
HpyCH4III	ACNGT	2 cut(s)	307, 313
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	390, 610
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 51, 222, 281, 290, 453
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	2 cut(s)	12, 275
Hsp92II	CATG	3 cut(s)	91, 202, 301
HspAI	GCGC	2 cut(s)	244, 582
KroI	GCCGGC	2 cut(s)	271, 469
KroNI	GCCGGC	2 cut(s)	273, 471
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	3 cut(s)	125, 154, 224
LweI	GCATC	3 cut(s)	231, 372, 456
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	7 cut(s)	74, 109, 126, 144, 209, 341, 558
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
MboII	GAAGA	5 cut(s)	28, 494, 497, 511, 560
MfeI	CAATTG	1 cut(s)	248
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	3 cut(s)	23, 248, 513
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	4 cut(s)	162, 227, 560, 568
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	8 cut(s)	56, 74, 78, 295, 352, 356, 364, 472
Mox20I	TGGCCA	1 cut(s)	254
MreI	CGCCGGCG	1 cut(s)	271
MroNI	GCCGGC	2 cut(s)	271, 469
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	8 cut(s)	105, 152, 222, 272, 449, 457, 470, 491
MspR9I	CCNGG	2 cut(s)	449, 510
MunI	CAATTG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	4 cut(s)	54, 186, 293, 330
MwoI	GCNNNNNNNGC	6 cut(s)	11, 51, 222, 281, 290, 453
NaeI	GCCGGC	2 cut(s)	273, 471
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
NgoMIV	GCCGGC	2 cut(s)	271, 469
NlaIII	CATG	3 cut(s)	91, 202, 301
NlaIV	GGNNCC	3 cut(s)	109, 121, 220
NmuCI	GTSAC	1 cut(s)	307
NotI	GCGGCCGC	1 cut(s)	325
NruI	TCGCGA	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	2 cut(s)	273, 471
PfeI	GAWTC	2 cut(s)	228, 569
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	53, 218, 295, 326, 329
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	4 cut(s)	162, 227, 559, 568
PpsI	GAGTC	4 cut(s)	162, 227, 559, 568
PsiI	TTATAA	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	109, 121, 220
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	145
RruI	TCGCGA	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	5 cut(s)	52, 217, 294, 325, 328
Sau3AI	GATC	7 cut(s)	72, 107, 124, 142, 207, 339, 556
SchI	GAGTC	4 cut(s)	162, 227, 560, 568
ScrFI	CCNGG	2 cut(s)	449, 510
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	66, 162, 363, 435
SfaNI	GCATC	3 cut(s)	231, 372, 456
SgrAI	CRCCGGYG	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	23, 248, 513
SseBI	AGGCCT	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	447, 508
StyI	CCWWGG	2 cut(s)	255, 279
TaaI	ACNGT	2 cut(s)	307, 313
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	6 cut(s)	39, 210, 231, 348, 559, 572
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	23, 248, 513
TauI	GCSGC	5 cut(s)	54, 219, 296, 327, 330
TfiI	GAWTC	2 cut(s)	228, 569
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.