Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

3986760 .. 3987407

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATTCCGAAGCTGAGTTCTCTTCCTTTTTCGACTGGTTCACGAGGAGGGGTCGAGACCGAGAGCTCTCTGTGCTCATGCCCTTAATATTAGGTGCAGCCGCCACCGCCGCCTCCGCCGCGACACCCGACACGGAAGACCCAGATGGAGGAAACCCTGAAAGACGAACCCCGCGGGAGCGAATAGTCCTCATCGACCCTTTCAGCCAACGCGTGGCGGTGATCGAAGGCGGTTCGGACCTGGACTCCCTGCTCCAGGGGCTGGGTGGCAAGGACGGTCAGCCGCCGGCGTCGAAGGCGTCGATCGACGCCATGCCAAGTGTGAAGATTGTCGAGGCGGATGGTGGATCCGAGTGCGCGATTTGCTTGGAGCAGTTTGAGGTGGACGGCGTGGCGAAGGAGATGCCTTGCAAGCACAGGTTTCATGGTGTTTGTATAGAGAAGTGGTTGACGCTTCATGGGTCGTGCCCGGTTTGCAGGTTTACGATGCCGGTTGAGGAGGAGGAGGTGGTAAAGAAGAGCGAAGAAACGGGCGGAGAGGGAAGGAGGGTTGACGGAGAGATTAGGGTCAGGGTGTTTGTTCACAATCGCAGGAGAGCAAGTGAGGGTCCAGATCAAGCCAGTGATGAGGATACGATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

216

Amino Acids

23.49

Weight (kDa)

4.77

Isoelectric Point (pI)

64.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	118 - 160	2e-14	Ring finger domain
zf-C3HC4_2	PF13923	118 - 159	2.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	118 - 146	5.3e-09	RING-like zinc finger
zf-C3HC4	PF00097	119 - 159	5.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	134 - 160	8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	468
AccB7I	CCANNNNNTGG	2 cut(s)	214, 262
AccII	CGCG	4 cut(s)	122, 175, 213, 359
AclWI	GGATC	2 cut(s)	342, 355
AcyI	GRCGYC	3 cut(s)	290, 299, 309
AfiI	CCNNNNNNNGG	4 cut(s)	149, 214, 256, 262
AflIII	ACRYGT	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	240, 255
AluBI	AGCT	2 cut(s)	14, 67
AluI	AGCT	2 cut(s)	14, 67
Alw21I	GWGCWC	2 cut(s)	69, 78
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	342, 355
AlwNI	CAGNNNCTG	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	238, 608
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	2 cut(s)	238, 608
BaeGI	GKGCMC	1 cut(s)	470
BamHI	GGATCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	69, 78
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	140, 335
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	2 cut(s)	242, 257
BciVI	GTATCC	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	5 cut(s)	99, 102, 111, 120, 284
BlsI	GCNGC	5 cut(s)	100, 103, 112, 121, 285
Bme1390I	CCNGG	3 cut(s)	242, 257, 470
Bme18I	GGWCC	2 cut(s)	238, 608
BmgT120I	GGNCC	2 cut(s)	238, 608
BmiI	GGNNCC	2 cut(s)	349, 609
BmrFI	CCNGG	3 cut(s)	242, 257, 470
BmsI	GCATC	3 cut(s)	393, 477, 627
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	3 cut(s)	290, 299, 309
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	173, 256
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 586, 616
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 214, 256, 262
Bse118I	RCCGGY	2 cut(s)	286, 490
Bse1I	ACTGG	2 cut(s)	41, 621
BseBI	CCWGG	2 cut(s)	242, 257
BseDI	CCNNGG	2 cut(s)	173, 256
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	4 cut(s)	149, 214, 256, 262
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	41, 621
BseRI	GAGGAG	4 cut(s)	61, 512, 515, 518
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	4 cut(s)	122, 175, 213, 359
Bsh1285I	CGRYCG	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	69, 78
BsiSI	CCGG	3 cut(s)	287, 470, 491
BslI	CCNNNNNNNGG	4 cut(s)	149, 214, 256, 262
BsmAI	GTCTC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	69, 78, 470
Bsp143I	GATC	4 cut(s)	222, 303, 347, 613
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	4 cut(s)	122, 175, 213, 359
BspLI	GGNNCC	2 cut(s)	349, 609
BspMI	ACCTGC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	342, 355
BspQI	GCTCTTC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	51
BsrFI	RCCGGY	2 cut(s)	286, 490
BsrI	ACTGG	2 cut(s)	41, 621
BssAI	RCCGGY	2 cut(s)	286, 490
BssECI	CCNNGG	2 cut(s)	173, 256
BssMI	GATC	4 cut(s)	222, 303, 347, 613
BssNI	GRCGYC	3 cut(s)	290, 299, 309
BssSI	CACGAG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	242, 257
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	28, 512
BstACI	GRCGYC	3 cut(s)	290, 299, 309
BstC8I	GCNNGC	2 cut(s)	288, 413
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	173
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	4 cut(s)	122, 175, 213, 359
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	225, 306, 350, 616
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	222, 303, 347, 613
BstMCI	CGRYCG	1 cut(s)	306
BstNI	CCWGG	2 cut(s)	242, 257
BstSCI	CCNGG	3 cut(s)	240, 255, 468
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	4 cut(s)	122, 175, 213, 359
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	625
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	628
BveI	ACCTGC	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	288, 413
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	2 cut(s)	286, 490
Cfr13I	GGNCC	2 cut(s)	238, 608
Cfr42I	CCGCGG	1 cut(s)	176
CseI	GACGC	4 cut(s)	279, 288, 317, 460
CviAII	CATG	4 cut(s)	79, 313, 425, 458
CviJI	RGCY	7 cut(s)	14, 67, 101, 207, 262, 283, 620
CviKI_1	RGCY	7 cut(s)	14, 67, 101, 207, 262, 283, 620
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	4 cut(s)	224, 305, 349, 615
DpnII	GATC	4 cut(s)	222, 303, 347, 613
Eam1104I	CTCTTC	2 cut(s)	28, 512
EarI	CTCTTC	2 cut(s)	28, 512
EciI	GGCGGA	3 cut(s)	106, 353, 549
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	238, 608
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	240, 255
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	4 cut(s)	82, 316, 428, 461
FaiI	YATR	5 cut(s)	80, 314, 426, 437, 459
FatI	CATG	4 cut(s)	78, 312, 424, 457
FauI	CCCGC	2 cut(s)	168, 180
Fnu4HI	GCNGC	5 cut(s)	99, 102, 111, 120, 284
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	5 cut(s)	99, 102, 111, 120, 284
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	5 cut(s)	99, 102, 111, 120, 284
GsaI	CCCAGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	239
HapII	CCGG	3 cut(s)	287, 470, 491
HgaI	GACGC	4 cut(s)	279, 288, 317, 460
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	3 cut(s)	290, 299, 309
Hin1II	CATG	4 cut(s)	82, 316, 428, 461
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	2 cut(s)	450, 553
HindII	GTYRAC	2 cut(s)	450, 553
HinfI	GANTC	2 cut(s)	5, 245
HpaII	CCGG	3 cut(s)	287, 470, 491
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	6 cut(s)	42, 385, 450, 483, 553, 583
Hpy188I	TCNGA	3 cut(s)	10, 238, 352
Hpy188III	TCNNGA	3 cut(s)	43, 56, 611
Hpy8I	GTNNAC	6 cut(s)	42, 385, 450, 483, 553, 583
Hpy99I	CGWCG	3 cut(s)	295, 304, 311
HpyAV	CCTTC	4 cut(s)	221, 289, 391, 537
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	98, 411, 477, 640
HpyF3I	CTNAG	1 cut(s)	15
Hsp92I	GRCGYC	3 cut(s)	290, 299, 309
Hsp92II	CATG	4 cut(s)	82, 316, 428, 461
HspAI	GCGC	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
KspI	CCGCGG	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	222, 303, 347, 613
LguI	GCTCTTC	1 cut(s)	512
LmnI	GCTCC	3 cut(s)	178, 258, 370
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	3 cut(s)	393, 477, 627
MalI	GATC	4 cut(s)	224, 305, 349, 615
MboI	GATC	4 cut(s)	222, 303, 347, 613
MboII	GAAGA	5 cut(s)	15, 149, 337, 529, 536
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	3 cut(s)	69, 78, 470
MluI	ACGCGT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	239
MreI	CGCCGGCG	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	286
MseI	TTAA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	3 cut(s)	287, 470, 491
MspR9I	CCNGG	3 cut(s)	242, 257, 470
MvaI	CCWGG	2 cut(s)	242, 257
MvnI	CGCG	4 cut(s)	122, 175, 213, 359
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	4 cut(s)	222, 303, 347, 613
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	82, 316, 428, 461
NlaIV	GGNNCC	2 cut(s)	349, 609
PciSI	GCTCTTC	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	2 cut(s)	214, 262
PkrI	GCNGC	5 cut(s)	100, 103, 112, 121, 285
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	240, 255
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	2 cut(s)	240, 255
PspN4I	GGNNCC	2 cut(s)	349, 609
PspPI	GGNCC	2 cut(s)	238, 608
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	347
PvuI	CGATCG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	69
SacII	CCGCGG	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	5 cut(s)	99, 102, 111, 120, 284
Sau3AI	GATC	4 cut(s)	222, 303, 347, 613
Sau96I	GGNCC	2 cut(s)	238, 608
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	242, 257, 470
SduI	GDGCHC	3 cut(s)	69, 78, 470
SetI	ASST	8 cut(s)	16, 69, 97, 243, 384, 422, 482, 510
SfaNI	GCATC	3 cut(s)	393, 477, 627
Sfr303I	CCGCGG	1 cut(s)	176
SgrAI	CRCCGGYG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	176
SinI	GGWCC	2 cut(s)	238, 608
SspI	AATATT	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	240, 255, 468
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	8 cut(s)	33, 55, 195, 225, 293, 302, 306, 333
TaqII	GACCGA	1 cut(s)	75
TauI	GCSGC	4 cut(s)	104, 113, 122, 286
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	628
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	413, 446
TspGWI	ACGGA	2 cut(s)	149, 570
TspRI	CASTG	1 cut(s)	628
Van91I	CCANNNNNTGG	2 cut(s)	214, 262
VpaK11BI	GGWCC	2 cut(s)	238, 608
XagI	CCTNNNNNAGG	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.