Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Forward (+)

63916089 .. 63916666

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTTCCGACGCCGCCGTCTCCCAATTCGCTTCTTTCTTCGACTGCCTCCCCCACGGGCGAGATCTCCCTCCGATCATCCCTTTCATCATGGGCTTTGCCGTCATCGGATCCACGACAGACTCTAATCAACAACAAACCAAAGATCGTAGACCGGAGCGTGTTAATAGACTCGTCGTCATCAATCGCGAGGAGCATAACATGGTGGTGATTGAGAGCGGCTCCAGCGGAATCGACTCTCTGATGCGCGAATTGGCCAAGGACGCCCACCTGCCGACGTCCAAGGCCTCCATCGCCGCCATGCCAAAGGTGACGGTTCTGGAAAGCAACCGCGAGTGTCCAATTTGCCTCGACCAGTTTGAGGTTCACGGGACTTGCCCGGTTTGCTGGTTCATGATGCCGGCCGACGAGGAAGAAGAGCCGGAGAAGAAGAATGAGCCTGGAATTTCTGTCAGCATCTTGATAAGGGCAACAAGTGAAGATTCAGATCGAACTGGTGATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

169

Amino Acids

18.52

Weight (kDa)

4.74

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	279
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	279
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	3 cut(s)	189, 249, 333
AciI	CCGC	5 cut(s)	15, 219, 228, 297, 331
AclWI	GGATC	2 cut(s)	105, 118
AcoI	YGGCCR	2 cut(s)	255, 402
AcsI	RAATTY	1 cut(s)	444
AcyI	GRCGYC	3 cut(s)	12, 264, 278
AfiI	CCNNNNNNNGG	1 cut(s)	361
AhdI	GACNNNNNGTC	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	105, 118
AoxI	GGCC	3 cut(s)	255, 285, 402
ApoI	RAATTY	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	220, 322
BalI	TGGCCA	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	110
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	2, 86
BciT130I	CCWGG	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	279
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	15, 220, 297
BlsI	GCNGC	3 cut(s)	16, 221, 298
Bme1390I	CCNGG	2 cut(s)	380, 441
BmeRI	GACNNNNNGTC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	112, 223
BmrFI	CCNGG	2 cut(s)	380, 441
BmsI	GCATC	3 cut(s)	234, 387, 465
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	3 cut(s)	12, 264, 278
BsaJI	CCNNGG	3 cut(s)	55, 258, 282
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	355, 499
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	55, 258, 282
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	355, 499
BseRI	GAGGAG	1 cut(s)	206
BseX3I	CGGCCG	1 cut(s)	402
Bsh1236I	CGCG	3 cut(s)	189, 249, 333
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	257, 287, 404
BsiEI	CGRYCG	1 cut(s)	405
BsiSI	CCGG	4 cut(s)	155, 380, 401, 422
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	257, 287, 404
Bsp143I	GATC	5 cut(s)	64, 75, 110, 145, 487
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	5 cut(s)	15, 219, 228, 297, 331
BspANI	GGCC	3 cut(s)	257, 287, 404
BspFNI	CGCG	3 cut(s)	189, 249, 333
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	112, 223
BspMI	ACCTGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	105, 118
BspQI	GCTCTTC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	355, 499
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	55, 258, 282
BssMI	GATC	5 cut(s)	64, 75, 110, 145, 487
BssNI	GRCGYC	3 cut(s)	12, 264, 278
BssT1I	CCWWGG	2 cut(s)	258, 282
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	3 cut(s)	12, 264, 278
BstC8I	GCNNGC	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	3 cut(s)	189, 249, 333
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	5 cut(s)	67, 78, 113, 148, 490
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	5 cut(s)	64, 75, 110, 145, 487
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 225, 263, 293, 384
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	378, 439
BstUI	CGCG	3 cut(s)	189, 249, 333
BstX2I	RGATCY	2 cut(s)	64, 110
BstYI	RGATCY	2 cut(s)	64, 110
BstZI	CGGCCG	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	257, 287, 404
BtgI	CCRYGG	1 cut(s)	55
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	78
BtuMI	TCGCGA	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	400
CseI	GACGC	2 cut(s)	20, 272
CviAII	CATG	4 cut(s)	91, 202, 301, 394
CviJI	RGCY	8 cut(s)	5, 96, 222, 257, 287, 404, 421, 439
CviKI_1	RGCY	8 cut(s)	5, 96, 222, 257, 287, 404, 421, 439
DpnI	GATC	5 cut(s)	66, 77, 112, 147, 489
DpnII	GATC	5 cut(s)	64, 75, 110, 145, 487
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	2 cut(s)	255, 402
EagI	CGGCCG	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	411
Eam1105I	GACNNNNNGTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	411
EclXI	CGGCCG	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	258, 282
Eco147I	AGGCCT	1 cut(s)	287
Eco52I	CGGCCG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	258, 282
ErhI	CCWWGG	2 cut(s)	258, 282
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	4 cut(s)	94, 205, 304, 397
FaiI	YATR	5 cut(s)	92, 198, 203, 302, 395
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	4 cut(s)	90, 201, 300, 393
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	15, 220, 297
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	15, 220, 297
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	3 cut(s)	15, 220, 297
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	3 cut(s)	257, 287, 404
HapII	CCGG	4 cut(s)	155, 380, 401, 422
HgaI	GACGC	2 cut(s)	20, 272
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	3 cut(s)	12, 264, 278
Hin1II	CATG	4 cut(s)	94, 205, 304, 397
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	6 cut(s)	122, 171, 231, 236, 482, 500
HpaII	CCGG	4 cut(s)	155, 380, 401, 422
HphI	GGTGA	2 cut(s)	220, 322
Hpy166II	GTNNAC	2 cut(s)	152, 367
Hpy188I	TCNGA	5 cut(s)	10, 75, 110, 243, 487
Hpy188III	TCNNGA	4 cut(s)	188, 320, 394, 460
Hpy8I	GTNNAC	2 cut(s)	152, 367
Hpy99I	CGWCG	4 cut(s)	14, 179, 280, 410
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 225, 263, 293, 384
HpySE526I	ACGT	1 cut(s)	278
Hsp92I	GRCGYC	3 cut(s)	12, 264, 278
Hsp92II	CATG	4 cut(s)	94, 205, 304, 397
HspAI	GCGC	1 cut(s)	247
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
Kzo9I	GATC	5 cut(s)	64, 75, 110, 145, 487
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	3 cut(s)	157, 193, 227
LweI	GCATC	3 cut(s)	234, 387, 465
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	5 cut(s)	66, 77, 112, 147, 489
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	5 cut(s)	64, 75, 110, 145, 487
MboII	GAAGA	6 cut(s)	31, 425, 428, 439, 442, 491
MflI	RGATCY	2 cut(s)	64, 110
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	4 cut(s)	26, 251, 342, 444
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	3 cut(s)	116, 165, 230
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	59, 81, 184, 298, 355, 359, 403
Mox20I	TGGCCA	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	4 cut(s)	155, 380, 401, 422
MspR9I	CCNGG	2 cut(s)	380, 441
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	3 cut(s)	189, 249, 333
MwoI	GCNNNNNNNGC	5 cut(s)	11, 225, 263, 293, 384
NaeI	GCCGGC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	5 cut(s)	64, 75, 110, 145, 487
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	4 cut(s)	94, 205, 304, 397
NlaIV	GGNNCC	2 cut(s)	112, 223
NmuCI	GTSAC	1 cut(s)	310
NruI	TCGCGA	1 cut(s)	189
PagI	TCATGA	1 cut(s)	393
PaqCI	CACCTGC	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	231, 482, 500
PkrI	GCNGC	3 cut(s)	16, 221, 298
PleI	GAGTC	3 cut(s)	116, 165, 230
PpsI	GAGTC	3 cut(s)	116, 165, 230
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	112, 223
PsuI	RGATCY	2 cut(s)	64, 110
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	15, 220, 297
Sau3AI	GATC	5 cut(s)	64, 75, 110, 145, 487
SchI	GAGTC	3 cut(s)	116, 165, 230
ScrFI	CCNGG	2 cut(s)	380, 441
SetI	ASST	4 cut(s)	273, 281, 312, 366
SfaNI	GCATC	3 cut(s)	234, 387, 465
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	26, 251, 342, 444
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	5 cut(s)	15, 219, 228, 297, 331
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	378, 439
StyI	CCWWGG	2 cut(s)	258, 282
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	4 cut(s)	42, 234, 351, 490
TasI	AATT	4 cut(s)	26, 251, 342, 444
TauI	GCSGC	3 cut(s)	17, 222, 299
TfiI	GAWTC	3 cut(s)	231, 482, 500
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	76, 382
XapI	RAATTY	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	151
ZraI	GACGTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.