Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

30488996 .. 30489661

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTCCGACGCTGCGGTCTCCGAATTCGCTAACTTCTTCGACGCGATCAGCCGCGCCCGAGATCTCCCTCCGATCATCCCCTTCATCATGGGCATGGGCCTGGCCGTCGCCGGTTCAACACCTCCACCGCCAGGCTCCGATCAGCAACAACCCGCCGCCGGTCGGGTTAGCCGCCTCGTCGTCACCGTCGGTGACGACCAGACCACGGTGGTGATCCAGAGCGGCTCCGGCGGAATCGAGTCGCTGATGCGGCAGCTGGCCAAGGAAGGCCACCCGCCGGCGTCCAAGGCCTCCATCGCCGCCATGCCGACGGTGGAGATTAAAGAAAGCGGCGGCGGCGAGTGTCCGATTTGTCTGGATCAGTTTGAGGTCGGCGGAGAGGCGAAGCAGATGCCTTGTAATCATGTGTTTCATGGGGATTGTGTTGAGAAGTGGTTGAAGGTTCACGGGACTTGCCCGGTGTGCCGGTTTACGATGCCGGCCGACGAGGAAGAAGAGCCGGAGAAGAAGAACGAGAGTGGGAGTGGGATTTCTGTCAATATCTTTATTAGAACAACAATTGAAGAACCAGATCAAACTCATGATGATGATGATGAAGATGGTGATGATTCGACTCCGAGTCAAGAAGCAGCTGATGAAGATGGTGATCATATTCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

222

Amino Acids

23.45

Weight (kDa)

4.3

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	115 - 157	3.7e-17	Ring finger domain
zf-RING_11	PF17123	115 - 143	1.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	115 - 156	4.3e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	116 - 156	3.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	116 - 154	1.3e-07	RING-type zinc-finger
zf-rbx1	PF12678	116 - 157	7.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	225
AccII	CGCG	2 cut(s)	47, 57
AclWI	GGATC	2 cut(s)	211, 369
AcoI	YGGCCR	3 cut(s)	105, 261, 483
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	284
AfiI	CCNNNNNNNGG	5 cut(s)	134, 161, 165, 208, 280
AgsI	TTSAA	3 cut(s)	120, 442, 566
AhdI	GACNNNNNGTC	1 cut(s)	621
AjnI	CCWGG	2 cut(s)	102, 133
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	259, 635
AluI	AGCT	2 cut(s)	259, 635
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	211, 369
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	6 cut(s)	100, 105, 261, 271, 291, 483
ApeKI	GCWGC	3 cut(s)	14, 256, 632
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	5 cut(s)	178, 206, 226, 617, 659
AvaI	CYCGRG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	268, 644
BccI	CCATC	3 cut(s)	305, 596, 638
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	2 cut(s)	104, 135
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	64
Bme1390I	CCNGG	3 cut(s)	104, 135, 461
BmeRI	GACNNNNNGTC	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	139, 229
BmrFI	CCNGG	3 cut(s)	104, 135, 461
BmsI	GCATC	3 cut(s)	240, 384, 468
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	207, 264, 288
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 161, 165, 208, 280
Bse118I	RCCGGY	5 cut(s)	113, 161, 280, 468, 481
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	104, 135
BseDI	CCNNGG	3 cut(s)	207, 264, 288
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	5 cut(s)	134, 161, 165, 208, 280
BseX3I	CGGCCG	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	268, 644
Bsh1236I	CGCG	2 cut(s)	47, 57
Bsh1285I	CGRYCG	2 cut(s)	166, 486
BshFI	GGCC	6 cut(s)	102, 107, 263, 273, 293, 485
BsiEI	CGRYCG	2 cut(s)	166, 486
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	8 cut(s)	114, 162, 231, 281, 461, 469, 482, 503
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	5 cut(s)	134, 161, 165, 208, 280
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	6 cut(s)	102, 107, 263, 273, 293, 485
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
BspANI	GGCC	6 cut(s)	102, 107, 263, 273, 293, 485
BspFNI	CGCG	2 cut(s)	47, 57
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	139, 229
BspPI	GGATC	2 cut(s)	211, 369
BspQI	GCTCTTC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	225
BsrFI	RCCGGY	5 cut(s)	113, 161, 280, 468, 481
BssAI	RCCGGY	5 cut(s)	113, 161, 280, 468, 481
BssECI	CCNNGG	3 cut(s)	207, 264, 288
BssMI	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
BssNI	GRCGYC	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	264, 288
Bst2UI	CCWGG	2 cut(s)	104, 135
Bst4CI	ACNGT	3 cut(s)	190, 211, 316
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	261, 282, 483
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	2 cut(s)	47, 57
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	8 cut(s)	51, 67, 78, 145, 219, 364, 577, 652
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
BstMCI	CGRYCG	2 cut(s)	166, 486
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 231, 253, 290, 299, 339, 465
BstNI	CCWGG	2 cut(s)	104, 135
BstSCI	CCNGG	3 cut(s)	102, 133, 459
BstUI	CGCG	2 cut(s)	47, 57
BstV1I	GCAGC	2 cut(s)	268, 644
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BstZI	CGGCCG	1 cut(s)	483
BsuRI	GGCC	6 cut(s)	102, 107, 263, 273, 293, 485
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	261, 282, 483
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	5 cut(s)	113, 161, 280, 468, 481
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	3 cut(s)	20, 53, 273
CviAII	CATG	6 cut(s)	91, 97, 307, 407, 416, 584
DpnI	GATC	8 cut(s)	50, 66, 77, 144, 218, 363, 576, 651
DpnII	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	621
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	3 cut(s)	105, 261, 483
EagI	CGGCCG	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	492
Eam1105I	GACNNNNNGTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	2 cut(s)	249, 393
EclXI	CGGCCG	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	264, 288
Eco147I	AGGCCT	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	102, 133
EcoT14I	CCWWGG	2 cut(s)	264, 288
ErhI	CCWWGG	2 cut(s)	264, 288
FaeI	CATG	6 cut(s)	94, 100, 310, 410, 419, 587
FaiI	YATR	7 cut(s)	92, 98, 308, 408, 417, 585, 654
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	6 cut(s)	90, 96, 306, 406, 415, 583
FauI	CCCGC	2 cut(s)	163, 285
FbaI	TGATCA	1 cut(s)	649
FokI	GGATG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	58
HaeIII	GGCC	6 cut(s)	102, 107, 263, 273, 293, 485
HapII	CCGG	8 cut(s)	114, 162, 231, 281, 461, 469, 482, 503
HgaI	GACGC	3 cut(s)	20, 53, 273
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	6 cut(s)	94, 100, 310, 410, 419, 587
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	5 cut(s)	237, 242, 611, 616, 622
HpaII	CCGG	8 cut(s)	114, 162, 231, 281, 461, 469, 482, 503
HphI	GGTGA	5 cut(s)	178, 206, 226, 617, 659
Hpy166II	GTNNAC	2 cut(s)	448, 474
Hpy188I	TCNGA	7 cut(s)	10, 25, 75, 142, 351, 621, 660
Hpy188III	TCNNGA	4 cut(s)	220, 359, 584, 626
Hpy8I	GTNNAC	2 cut(s)	448, 474
Hpy99I	CGWCG	7 cut(s)	14, 47, 113, 185, 194, 316, 491
HpyAV	CCTTC	3 cut(s)	94, 263, 436
HpyCH4III	ACNGT	3 cut(s)	190, 211, 316
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 231, 253, 290, 299, 339, 465
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	6 cut(s)	94, 100, 310, 410, 419, 587
HspAI	GCGC	1 cut(s)	57
KroI	GCCGGC	2 cut(s)	280, 481
KroNI	GCCGGC	2 cut(s)	282, 483
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	143, 233
Lsp1109I	GCAGC	2 cut(s)	268, 644
LweI	GCATC	3 cut(s)	240, 384, 468
MaeIII	GTNAC	2 cut(s)	184, 194
MalI	GATC	8 cut(s)	50, 66, 77, 144, 218, 363, 576, 651
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
MboII	GAAGA	8 cut(s)	31, 506, 509, 520, 523, 578, 611, 653
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	2 cut(s)	26, 561
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	251, 610, 631
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	81, 135, 188, 304, 364, 376, 484
Mox20I	TGGCCA	1 cut(s)	263
MreI	CGCCGGCG	1 cut(s)	280
MroNI	GCCGGC	2 cut(s)	280, 481
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	3 cut(s)	95, 212, 588
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	259, 635
MspI	CCGG	8 cut(s)	114, 162, 231, 281, 461, 469, 482, 503
MspR9I	CCNGG	3 cut(s)	104, 135, 461
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	104, 135
MvnI	CGCG	2 cut(s)	47, 57
MwoI	GCNNNNNNNGC	7 cut(s)	11, 231, 253, 290, 299, 339, 465
NaeI	GCCGGC	2 cut(s)	282, 483
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
NgoMIV	GCCGGC	2 cut(s)	280, 481
NlaIII	CATG	6 cut(s)	94, 100, 310, 410, 419, 587
NlaIV	GGNNCC	2 cut(s)	139, 229
NmuCI	GTSAC	2 cut(s)	184, 194
OliI	CACNNNNGTG	1 cut(s)	212
PagI	TCATGA	1 cut(s)	583
PceI	AGGCCT	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	2 cut(s)	282, 483
PfeI	GAWTC	2 cut(s)	237, 611
PleI	GAGTC	3 cut(s)	250, 610, 630
PpsI	GAGTC	3 cut(s)	250, 610, 630
Psp6I	CCWGG	2 cut(s)	102, 133
PspGI	CCWGG	2 cut(s)	102, 133
PspN4I	GGNNCC	2 cut(s)	139, 229
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	2 cut(s)	259, 635
RseI	CAYNNNNRTG	3 cut(s)	95, 212, 588
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	8 cut(s)	48, 64, 75, 142, 216, 361, 574, 649
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	3 cut(s)	251, 610, 631
ScrFI	CCNGG	3 cut(s)	104, 135, 461
SetI	ASST	5 cut(s)	127, 261, 375, 447, 637
SfaNI	GCATC	3 cut(s)	240, 384, 468
SgrAI	CRCCGGYG	1 cut(s)	280
SmiMI	CAYNNNNRTG	3 cut(s)	95, 212, 588
Sse9I	AATT	2 cut(s)	26, 561
SseBI	AGGCCT	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	3 cut(s)	102, 133, 459
StyI	CCWWGG	2 cut(s)	264, 288
TaaI	ACNGT	3 cut(s)	190, 211, 316
TaqI	TCGA	3 cut(s)	42, 240, 614
TasI	AATT	2 cut(s)	26, 561
TauI	GCSGC	9 cut(s)	57, 161, 177, 228, 256, 305, 336, 339, 342
TfiI	GAWTC	2 cut(s)	237, 611
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	184, 194
TseI	GCWGC	3 cut(s)	14, 256, 632
Tsp45I	GTSAC	2 cut(s)	184, 194
TspDTI	ATGAA	4 cut(s)	76, 404, 612, 654
XapI	RAATTY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.