Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

58927570 .. 58928508

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G031720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTTCCGACGCCGCCGTCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCCGCGACCGAGACCTCCCTCCGATCATCCCCTTCATCATGGGCTTGGCCGTCGCCGGATCCACCGCAGGCTCCGATCTACAGCAAACCGACGATCGCAGACCGGAGCGTGTTAACCGACTCGTCGTCGTCAATCGCGACGAGCAAAACATGGTGGTGATCGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCCAATTGGCCAAGGACGGCCACCCGCCGGCGTCCAAGGCCTCCATCGCCGCCATGCCGACGGTGACGGTTGCGGAAAGCGGCCGCGAGTGTCCGATTTGCCTCGACCAGTTTGAGGTCGGCGGAGAGGCCAAAGAGATGCCTTGCAGTCATTTGTTTCACGGGGATTGTGTTGACAAGTGGTTGAAGGTTCACGGGACTTGCCCGGTTTGCCGGTTCACGATGCCGGCCGACGAGGAAGAAGAGCCGGAGAAGAAGAATGAGCCTGGAATTTCTGTCAGCATCTTTATAAGGGCAACAAGTGAAGAGTCAGATCGAATTGGTGATTCGGGTGATTCAACTCCAAGCGAAGCAGCAGCTGATGATGATGGTGATCATATGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

212

Amino Acids

22.92

Weight (kDa)

4.58

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	113 - 155	1.1e-16	Ring finger domain
zf-RING_11	PF17123	113 - 141	2.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	113 - 154	1.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	114 - 154	3.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	114 - 152	5.8e-07	RING-type zinc-finger
zf-rbx1	PF12678	129 - 155	1e-05	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AasI	GACNNNNNNGTC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	222
AccII	CGCG	3 cut(s)	60, 192, 336
AclWI	GGATC	2 cut(s)	108, 121
AcoI	YGGCCR	5 cut(s)	102, 258, 268, 331, 477
AcsI	RAATTY	1 cut(s)	519
AcyI	GRCGYC	2 cut(s)	12, 281
AfiI	CCNNNNNNNGG	2 cut(s)	277, 364
AgsI	TTSAA	2 cut(s)	436, 588
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	1 cut(s)	608
AluI	AGCT	1 cut(s)	608
Alw26I	GTCTC	2 cut(s)	28, 60
AlwI	GGATC	2 cut(s)	108, 121
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	7 cut(s)	102, 258, 268, 288, 331, 378, 477
ApeKI	GCWGC	2 cut(s)	602, 605
ApoI	RAATTY	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	5 cut(s)	223, 325, 584, 593, 632
BalI	TGGCCA	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	614, 617
BccI	CCATC	2 cut(s)	302, 611
BceAI	ACGGC	3 cut(s)	2, 89, 283
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	28, 60
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	8 cut(s)	15, 58, 223, 300, 331, 334, 603, 606
BlsI	GCNGC	8 cut(s)	16, 59, 224, 301, 332, 335, 604, 607
Bme1390I	CCNGG	2 cut(s)	455, 516
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	115, 127, 226
BmrFI	CCNGG	2 cut(s)	455, 516
BmsI	GCATC	4 cut(s)	237, 378, 462, 540
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	2 cut(s)	12, 281
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	261, 285
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 364
Bse118I	RCCGGY	3 cut(s)	277, 462, 475
Bse1I	ACTGG	1 cut(s)	358
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	261, 285
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	277, 364
BseNI	ACTGG	1 cut(s)	358
BseX3I	CGGCCG	2 cut(s)	331, 477
BseXI	GCAGC	2 cut(s)	614, 617
Bsh1236I	CGCG	3 cut(s)	60, 192, 336
Bsh1285I	CGRYCG	5 cut(s)	49, 64, 151, 334, 480
BshFI	GGCC	7 cut(s)	104, 260, 270, 290, 333, 380, 479
BsiEI	CGRYCG	5 cut(s)	49, 64, 151, 334, 480
BsiSI	CCGG	8 cut(s)	111, 158, 228, 278, 455, 463, 476, 497
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	277, 364
BsmAI	GTCTC	2 cut(s)	28, 60
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	7 cut(s)	104, 260, 270, 290, 333, 380, 479
Bso31I	GGTCTC	1 cut(s)	60
Bsp143I	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
Bsp68I	TCGCGA	1 cut(s)	192
BspANI	GGCC	7 cut(s)	104, 260, 270, 290, 333, 380, 479
BspFNI	CGCG	3 cut(s)	60, 192, 336
BspLI	GGNNCC	3 cut(s)	115, 127, 226
BspPI	GGATC	2 cut(s)	108, 121
BspQI	GCTCTTC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	3 cut(s)	277, 462, 475
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	3 cut(s)	277, 462, 475
BssECI	CCNNGG	2 cut(s)	261, 285
BssMI	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
BssNI	GRCGYC	2 cut(s)	12, 281
BssT1I	CCWWGG	2 cut(s)	261, 285
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	313, 319
Bst6I	CTCTTC	2 cut(s)	486, 549
BstACI	GRCGYC	2 cut(s)	12, 281
BstC8I	GCNNGC	3 cut(s)	124, 279, 477
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	3 cut(s)	60, 192, 336
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	7 cut(s)	81, 116, 133, 151, 216, 565, 625
BstMAI	GTCTC	2 cut(s)	28, 60
BstMBI	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
BstMCI	CGRYCG	5 cut(s)	49, 64, 151, 334, 480
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 57, 228, 287, 296, 459
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	453, 514
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	3 cut(s)	60, 192, 336
BstV1I	GCAGC	2 cut(s)	614, 617
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BstZI	CGGCCG	2 cut(s)	331, 477
BsuRI	GGCC	7 cut(s)	104, 260, 270, 290, 333, 380, 479
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	81
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	124, 279, 477
CaiI	CAGNNNCTG	1 cut(s)	608
CciNI	GCGGCCGC	1 cut(s)	331
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	3 cut(s)	277, 462, 475
CseI	GACGC	2 cut(s)	20, 270
CviAII	CATG	3 cut(s)	94, 205, 304
DpnI	GATC	7 cut(s)	80, 115, 132, 150, 215, 564, 624
DpnII	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	5 cut(s)	102, 258, 268, 331, 477
EagI	CGGCCG	2 cut(s)	331, 477
Eam1104I	CTCTTC	2 cut(s)	486, 549
Eam1105I	GACNNNNNGTC	1 cut(s)	179
EarI	CTCTTC	2 cut(s)	486, 549
EciI	GGCGGA	3 cut(s)	44, 246, 387
EclXI	CGGCCG	2 cut(s)	331, 477
Eco130I	CCWWGG	2 cut(s)	261, 285
Eco147I	AGGCCT	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	60
Eco52I	CGGCCG	2 cut(s)	331, 477
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	261, 285
ErhI	CCWWGG	2 cut(s)	261, 285
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	97, 208, 307
FaiI	YATR	6 cut(s)	95, 206, 305, 539, 627, 629
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	93, 204, 303
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	627
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	8 cut(s)	15, 58, 223, 300, 331, 334, 603, 606
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	8 cut(s)	15, 58, 223, 300, 331, 334, 603, 606
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	8 cut(s)	15, 58, 223, 300, 331, 334, 603, 606
HaeIII	GGCC	7 cut(s)	104, 260, 270, 290, 333, 380, 479
HapII	CCGG	8 cut(s)	111, 158, 228, 278, 455, 463, 476, 497
HgaI	GACGC	2 cut(s)	20, 270
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	2 cut(s)	12, 281
Hin1II	CATG	3 cut(s)	97, 208, 307
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	2 cut(s)	169, 424
HindII	GTYRAC	2 cut(s)	169, 424
HinfI	GANTC	6 cut(s)	174, 234, 239, 557, 575, 584
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	8 cut(s)	111, 158, 228, 278, 455, 463, 476, 497
HphI	GGTGA	5 cut(s)	223, 325, 584, 593, 632
Hpy166II	GTNNAC	4 cut(s)	169, 424, 442, 468
Hpy188I	TCNGA	6 cut(s)	10, 78, 130, 246, 345, 562
Hpy188III	TCNNGA	3 cut(s)	191, 217, 469
Hpy8I	GTNNAC	4 cut(s)	169, 424, 442, 468
Hpy99I	CGWCG	9 cut(s)	14, 23, 110, 149, 182, 185, 197, 313, 485
HpyAV	CCTTC	3 cut(s)	49, 97, 430
HpyCH4III	ACNGT	2 cut(s)	313, 319
HpyCH4V	TGCA	2 cut(s)	396, 631
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 57, 228, 287, 296, 459
Hsp92I	GRCGYC	2 cut(s)	12, 281
Hsp92II	CATG	3 cut(s)	97, 208, 307
HspAI	GCGC	1 cut(s)	250
KroI	GCCGGC	2 cut(s)	277, 475
KroNI	GCCGGC	2 cut(s)	279, 477
Ksp22I	TGATCA	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	3 cut(s)	131, 160, 230
Lsp1109I	GCAGC	2 cut(s)	614, 617
LweI	GCATC	4 cut(s)	237, 378, 462, 540
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	7 cut(s)	80, 115, 132, 150, 215, 564, 624
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
MboII	GAAGA	6 cut(s)	34, 500, 503, 514, 517, 566
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	1 cut(s)	113
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	4 cut(s)	29, 254, 519, 567
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	3 cut(s)	168, 233, 566
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	8 cut(s)	62, 80, 84, 301, 358, 362, 370, 478
Mox20I	TGGCCA	1 cut(s)	260
MreI	CGCCGGCG	1 cut(s)	277
MroNI	GCCGGC	2 cut(s)	277, 475
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	8 cut(s)	111, 158, 228, 278, 455, 463, 476, 497
MspR9I	CCNGG	2 cut(s)	455, 516
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	516
MvnI	CGCG	3 cut(s)	60, 192, 336
MwoI	GCNNNNNNNGC	6 cut(s)	11, 57, 228, 287, 296, 459
NaeI	GCCGGC	2 cut(s)	279, 477
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
NgoMIV	GCCGGC	2 cut(s)	277, 475
NlaIII	CATG	3 cut(s)	97, 208, 307
NlaIV	GGNNCC	3 cut(s)	115, 127, 226
NmuCI	GTSAC	1 cut(s)	313
NotI	GCGGCCGC	1 cut(s)	331
NruI	TCGCGA	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 189
PdiI	GCCGGC	2 cut(s)	279, 477
PfeI	GAWTC	3 cut(s)	234, 575, 584
PkrI	GCNGC	8 cut(s)	16, 59, 224, 301, 332, 335, 604, 607
Ple19I	CGATCG	1 cut(s)	151
PleI	GAGTC	3 cut(s)	168, 233, 565
PpsI	GAGTC	3 cut(s)	168, 233, 565
PsiI	TTATAA	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	115, 127, 226
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	113
PvuI	CGATCG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	608
RruI	TCGCGA	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	8 cut(s)	15, 58, 223, 300, 331, 334, 603, 606
Sau3AI	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 622
SchI	GAGTC	3 cut(s)	168, 233, 566
ScrFI	CCNGG	2 cut(s)	455, 516
SetI	ASST	4 cut(s)	72, 369, 441, 610
SfaNI	GCATC	4 cut(s)	237, 378, 462, 540
SfcI	CTRYAG	1 cut(s)	134
SgrAI	CRCCGGYG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	29, 254, 519, 567
SseBI	AGGCCT	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	453, 514
StyI	CCWWGG	2 cut(s)	261, 285
TaaI	ACNGT	2 cut(s)	313, 319
TaqI	TCGA	5 cut(s)	45, 216, 237, 354, 565
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	4 cut(s)	29, 254, 519, 567
TauI	GCSGC	6 cut(s)	17, 60, 225, 302, 333, 336
TfiI	GAWTC	3 cut(s)	234, 575, 584
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	602, 605
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	79
XapI	RAATTY	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.