Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

4993345 .. 4994001

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1071200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGATTCCGAAGCTGAGTTTGCGCCTGAGTTCGCTTCCCTTTTCGACTGGCTCACGAGGAGGGGTCCAGATCGCGAGCTCTCTGTGCTCATGCCCTTAATGTTAGGTGCAGTCGCCTCCGCCTCCACCGCGACACTCGACCTGGAAAACCCAGATGGAGAAAACCCGGAAAGACGAACCCCGCGGGAGCGAATATTTCTCGTCGATCCTTTCAACCAACGCGTGGCCGTGATCGGAGGCGATTCTGACCTGGACTCGCTGCTGCAGGGGCTGGGTGGCAAGGACGGTCAGCCGCCTGCGTCGAAGGCGTCGATTGACGCCATGCCGAGTGTCACGATTGTCGAGGCGGACGTCGGGTCTGAGTGCTCGATTTGCTTGGAGCAGTTTGAGGTCGACGGCGTGGCGAAGGAGATGCCTTGCAAGCATAGGTTTCATGGGGATTGTATAGAGAGGTGGCTGAAACTTCGTGGGTCGTGCCCGGTCTGCAGGTTTACGATGCCTTTTGAGGAGGAGGAGGTGGGGAAGAAGGGCGGTGAAGCAAGCGGAGAGAGGAGGAGGCTCCACGGGGAGATAACGGTTAGGGTTTTTGTTCACAATGGCAGGAGAGCAAGTGAGGGTTCTGAGCAATCCAGTGATGATGATACGATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

219

Amino Acids

23.94

Weight (kDa)

4.71

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	120 - 163	3e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	121 - 163	5.3e-15	Ring finger domain
zf-RING_11	PF17123	121 - 149	5.1e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	121 - 162	5.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	122 - 162	9.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	122 - 160	5.3e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
Acc36I	ACCTGC	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	4 cut(s)	75, 131, 184, 222
AciI	CCGC	8 cut(s)	120, 129, 182, 184, 293, 347, 531, 543
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	225
AcyI	GRCGYC	3 cut(s)	308, 318, 351
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	214
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	141, 249
AluBI	AGCT	2 cut(s)	14, 79
AluI	AGCT	2 cut(s)	14, 79
Alw21I	GWGCWC	3 cut(s)	81, 90, 368
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	259, 262
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	2 cut(s)	167, 479
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	55
Bbv12I	GWGCWC	3 cut(s)	81, 90, 368
BbvI	GCAGC	2 cut(s)	246, 249
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	212, 412
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	143, 251
BcnI	CCSGG	2 cut(s)	167, 479
BfmI	CTRYAG	2 cut(s)	263, 484
BfuAI	ACCTGC	1 cut(s)	477
BisI	GCNGC	3 cut(s)	260, 263, 293
BlsI	GCNGC	3 cut(s)	261, 264, 294
Bme1390I	CCNGG	4 cut(s)	143, 167, 251, 479
Bme18I	GGWCC	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	66, 560
BmrFI	CCNGG	4 cut(s)	143, 167, 251, 479
BmsI	GCATC	3 cut(s)	402, 486, 636
BpuMI	CCSGG	2 cut(s)	167, 479
BsaHI	GRCGYC	3 cut(s)	308, 318, 351
BsaJI	CCNNGG	2 cut(s)	182, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	53, 630
BseBI	CCWGG	2 cut(s)	143, 251
BseDI	CCNNGG	2 cut(s)	182, 562
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	4 cut(s)	6, 18, 351, 612
BseNI	ACTGG	2 cut(s)	53, 630
BseRI	GAGGAG	6 cut(s)	73, 521, 524, 527, 565, 568
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	246, 249
BseYI	CCCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	4 cut(s)	75, 131, 184, 222
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	3 cut(s)	81, 90, 368
BsiSI	CCGG	2 cut(s)	167, 479
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	4 cut(s)	81, 90, 368, 479
Bsp143I	GATC	3 cut(s)	70, 205, 231
Bsp68I	TCGCGA	1 cut(s)	75
BspACI	CCGC	8 cut(s)	120, 129, 182, 184, 293, 347, 531, 543
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	4 cut(s)	7, 19, 352, 613
BspFNI	CGCG	4 cut(s)	75, 131, 184, 222
BspLI	GGNNCC	2 cut(s)	66, 560
BspMAI	CTGCAG	2 cut(s)	267, 488
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	53, 630
BssECI	CCNNGG	2 cut(s)	182, 562
BssMI	GATC	3 cut(s)	70, 205, 231
BssNI	GRCGYC	3 cut(s)	308, 318, 351
BssSI	CACGAG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	143, 251
Bst4CI	ACNGT	2 cut(s)	287, 577
BstACI	GRCGYC	3 cut(s)	308, 318, 351
BstC8I	GCNNGC	4 cut(s)	77, 297, 422, 541
BstDEI	CTNAG	4 cut(s)	15, 27, 360, 621
BstDSI	CCRYGG	2 cut(s)	182, 562
BstFNI	CGCG	4 cut(s)	75, 131, 184, 222
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	73, 208, 234
BstMBI	GATC	3 cut(s)	70, 205, 231
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 85, 128, 268, 305, 372, 421, 483
BstNI	CCWGG	2 cut(s)	143, 251
BstSCI	CCNGG	4 cut(s)	141, 165, 249, 477
BstSFI	CTRYAG	2 cut(s)	263, 484
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	4 cut(s)	75, 131, 184, 222
BstV1I	GCAGC	2 cut(s)	246, 249
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	2 cut(s)	182, 562
BtsIMutI	CAGTG	1 cut(s)	637
BtuMI	TCGCGA	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	4 cut(s)	77, 297, 422, 541
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	65
Cfr42I	CCGCGG	1 cut(s)	185
CseI	GACGC	3 cut(s)	288, 297, 326
CviAII	CATG	3 cut(s)	91, 322, 434
CviJI	RGCY	8 cut(s)	14, 52, 79, 227, 271, 292, 457, 559
CviKI_1	RGCY	8 cut(s)	14, 52, 79, 227, 271, 292, 457, 559
DdeI	CTNAG	4 cut(s)	15, 27, 360, 621
DpnI	GATC	3 cut(s)	72, 207, 233
DpnII	GATC	3 cut(s)	70, 205, 231
DriI	GACNNNNNGTC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EciI	GGCGGA	2 cut(s)	109, 362
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	141, 249
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	3 cut(s)	94, 325, 437
FaiI	YATR	5 cut(s)	92, 323, 426, 435, 446
FatI	CATG	3 cut(s)	90, 321, 433
FauI	CCCGC	2 cut(s)	177, 189
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	260, 263, 293
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	260, 263, 293
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	260, 263, 293
GsaI	CCCAGC	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	167, 479
HgaI	GACGC	3 cut(s)	288, 297, 326
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	3 cut(s)	308, 318, 351
Hin1II	CATG	3 cut(s)	94, 325, 437
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	5, 242, 254
HpaII	CCGG	2 cut(s)	167, 479
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	394, 492, 592
Hpy188I	TCNGA	5 cut(s)	10, 236, 247, 361, 622
Hpy188III	TCNNGA	4 cut(s)	55, 68, 74, 334
Hpy8I	GTNNAC	3 cut(s)	394, 492, 592
Hpy99I	CGWCG	5 cut(s)	206, 304, 313, 356, 398
HpyAV	CCTTC	3 cut(s)	298, 400, 520
HpyCH4III	ACNGT	2 cut(s)	287, 577
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	110, 265, 420, 486, 649
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 85, 128, 268, 305, 372, 421, 483
HpyF3I	CTNAG	4 cut(s)	15, 27, 360, 621
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	3 cut(s)	308, 318, 351
Hsp92II	CATG	3 cut(s)	94, 325, 437
HspAI	GCGC	1 cut(s)	23
KspI	CCGCGG	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	70, 205, 231
LmnI	GCTCC	3 cut(s)	187, 379, 564
Lsp1109I	GCAGC	2 cut(s)	246, 249
LweI	GCATC	3 cut(s)	402, 486, 636
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	72, 207, 233
MboI	GATC	3 cut(s)	70, 205, 231
MboII	GAAGA	1 cut(s)	535
MhlI	GDGCHC	4 cut(s)	81, 90, 368, 479
MluI	ACGCGT	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	248
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	2 cut(s)	167, 479
MspR9I	CCNGG	4 cut(s)	143, 167, 251, 479
MvaI	CCWGG	2 cut(s)	143, 251
MvnI	CGCG	4 cut(s)	75, 131, 184, 222
MwoI	GCNNNNNNNGC	8 cut(s)	20, 85, 128, 268, 305, 372, 421, 483
NciI	CCSGG	2 cut(s)	167, 479
NdeII	GATC	3 cut(s)	70, 205, 231
NlaIII	CATG	3 cut(s)	94, 325, 437
NlaIV	GGNNCC	2 cut(s)	66, 560
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	331
NruI	TCGCGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	2 cut(s)	308, 348
PfeI	GAWTC	2 cut(s)	5, 242
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	261, 264, 294
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	141, 249
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	2 cut(s)	141, 249
PspN4I	GGNNCC	2 cut(s)	66, 560
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	2 cut(s)	267, 488
PstNI	CAGNNNCTG	1 cut(s)	271
RruI	TCGCGA	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	81
SacII	CCGCGG	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	3 cut(s)	260, 263, 293
Sau3AI	GATC	3 cut(s)	70, 205, 231
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	4 cut(s)	143, 167, 251, 479
SduI	GDGCHC	4 cut(s)	81, 90, 368, 479
SfaNI	GCATC	3 cut(s)	402, 486, 636
SfcI	CTRYAG	2 cut(s)	263, 484
Sfr303I	CCGCGG	1 cut(s)	185
SgrBI	CCGCGG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	65
SsiI	CCGC	8 cut(s)	120, 129, 182, 184, 293, 347, 531, 543
SspI	AATATT	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	4 cut(s)	141, 165, 249, 477
TaaI	ACNGT	2 cut(s)	287, 577
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	8 cut(s)	45, 138, 204, 302, 311, 342, 368, 393
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	2 cut(s)	5, 242
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	259, 262
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	637
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	393
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.