Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Forward (+)

77930603 .. 77931726

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG454500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTTCCGACGCCGCCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCCGCGACCGAGACCTCCCTCCGATCATCCCCTTCATCACGGGCTTGGCCGTCGCCGGATCCACTGCAGGCTCAAATCAACAGCAAACCGAAGATCGTAGACCGGAGCGTGTTAACCGACTCGTCGTCGTCAATCGCGAGGAGCAAAACATGGTGGTGATCGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCCCCAATTGGCCAAGGACGGCCACCCGCCGGCGTCCAAGGCCTCCATCGCCGCCATGCCGACGGTGACGGTTGCGGAAAGCTGCTGCGAGTGTCCGATTTGCCTCGACCAGTTTGAGGTCGGCAGAGAGGCCAAAGAGATGCCTTGCAGTCATTTGTTTCACCGGCGATTGTGTTTCACGGACGATTTCCAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

147

Amino Acids

16.15

Weight (kDa)

5.15

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_11	PF17123	112 - 137	2.7e-09	RING-like zinc finger
zf-RING_2	PF13639	112 - 142	3.2e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	2 cut(s)	57, 189
AciI	CCGC	9 cut(s)	15, 46, 52, 55, 219, 228, 272, 297, 320
AclWI	GGATC	2 cut(s)	105, 118
AcoI	YGGCCR	3 cut(s)	99, 255, 265
AcyI	GRCGYC	2 cut(s)	12, 278
AfiI	CCNNNNNNNGG	2 cut(s)	274, 361
AhdI	GACNNNNNGTC	1 cut(s)	176
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	25, 57
AlwI	GGATC	2 cut(s)	105, 118
AoxI	GGCC	5 cut(s)	99, 255, 265, 285, 375
ApeKI	GCWGC	2 cut(s)	327, 330
AsuHPI	GGTGA	3 cut(s)	220, 322, 398
BalI	TGGCCA	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	314, 317
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	3 cut(s)	2, 86, 280
BcoDI	GTCTC	2 cut(s)	25, 57
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
BlsI	GCNGC	6 cut(s)	16, 56, 221, 298, 329, 332
BmeRI	GACNNNNNGTC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	112, 223
BmsI	GCATC	2 cut(s)	234, 375
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BsaHI	GRCGYC	2 cut(s)	12, 278
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	258, 282
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 361
Bse118I	RCCGGY	2 cut(s)	274, 408
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	258, 282
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	274, 361
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	314, 317
Bsh1236I	CGCG	2 cut(s)	57, 189
Bsh1285I	CGRYCG	2 cut(s)	46, 61
BshFI	GGCC	5 cut(s)	101, 257, 267, 287, 377
BsiEI	CGRYCG	2 cut(s)	46, 61
BsiSI	CCGG	5 cut(s)	108, 155, 225, 275, 409
BslI	CCNNNNNNNGG	2 cut(s)	274, 361
BsmAI	GTCTC	2 cut(s)	25, 57
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	5 cut(s)	101, 257, 267, 287, 377
Bso31I	GGTCTC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	75, 110, 145, 210
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	9 cut(s)	15, 46, 52, 55, 219, 228, 272, 297, 320
BspANI	GGCC	5 cut(s)	101, 257, 267, 287, 377
BspFNI	CGCG	2 cut(s)	57, 189
BspLI	GGNNCC	2 cut(s)	112, 223
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	2 cut(s)	105, 118
BspTNI	GGTCTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	274, 408
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	2 cut(s)	274, 408
BssECI	CCNNGG	2 cut(s)	258, 282
BssMI	GATC	4 cut(s)	75, 110, 145, 210
BssNI	GRCGYC	2 cut(s)	12, 278
BssT1I	CCWWGG	2 cut(s)	258, 282
Bst4CI	ACNGT	3 cut(s)	310, 316, 441
BstACI	GRCGYC	2 cut(s)	12, 278
BstC8I	GCNNGC	2 cut(s)	121, 276
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	2 cut(s)	57, 189
BstKTI	GATC	4 cut(s)	78, 113, 148, 213
BstMAI	GTCTC	2 cut(s)	25, 57
BstMBI	GATC	4 cut(s)	75, 110, 145, 210
BstMCI	CGRYCG	2 cut(s)	46, 61
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 54, 225, 284, 293
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	2 cut(s)	57, 189
BstV1I	GCAGC	2 cut(s)	314, 317
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	5 cut(s)	101, 257, 267, 287, 377
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	121, 276
Cfr10I	RCCGGY	2 cut(s)	274, 408
CseI	GACGC	2 cut(s)	20, 267
CviAII	CATG	2 cut(s)	202, 301
DpnI	GATC	4 cut(s)	77, 112, 147, 212
DpnII	GATC	4 cut(s)	75, 110, 145, 210
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	3 cut(s)	99, 255, 265
Eam1105I	GACNNNNNGTC	1 cut(s)	176
EciI	GGCGGA	2 cut(s)	41, 243
Eco130I	CCWWGG	2 cut(s)	258, 282
Eco147I	AGGCCT	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	258, 282
ErhI	CCWWGG	2 cut(s)	258, 282
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	205, 304
FaiI	YATR	2 cut(s)	203, 302
FatI	CATG	2 cut(s)	201, 300
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
GluI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
HaeIII	GGCC	5 cut(s)	101, 257, 267, 287, 377
HapII	CCGG	5 cut(s)	108, 155, 225, 275, 409
HgaI	GACGC	2 cut(s)	20, 267
Hin1I	GRCGYC	2 cut(s)	12, 278
Hin1II	CATG	2 cut(s)	205, 304
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	171, 231, 236
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	5 cut(s)	108, 155, 225, 275, 409
HphI	GGTGA	3 cut(s)	220, 322, 398
Hpy166II	GTNNAC	2 cut(s)	152, 166
Hpy188I	TCNGA	4 cut(s)	10, 75, 243, 342
Hpy188III	TCNNGA	2 cut(s)	188, 214
Hpy8I	GTNNAC	2 cut(s)	152, 166
Hpy99I	CGWCG	5 cut(s)	14, 107, 179, 182, 310
HpyAV	CCTTC	2 cut(s)	46, 94
HpyCH4III	ACNGT	3 cut(s)	310, 316, 441
HpyCH4V	TGCA	2 cut(s)	119, 393
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 54, 225, 284, 293
Hsp92I	GRCGYC	2 cut(s)	12, 278
Hsp92II	CATG	2 cut(s)	205, 304
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	75, 110, 145, 210
LmnI	GCTCC	3 cut(s)	157, 193, 227
LpnPI	CCDG	7 cut(s)	105, 121, 168, 238, 288, 368, 422
Lsp1109I	GCAGC	2 cut(s)	314, 317
LweI	GCATC	2 cut(s)	234, 375
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	4 cut(s)	77, 112, 147, 212
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	4 cut(s)	75, 110, 145, 210
MboII	GAAGA	2 cut(s)	31, 155
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	110
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	26, 251
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	165, 230
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	8 cut(s)	59, 77, 81, 184, 298, 355, 359, 367
Mox20I	TGGCCA	1 cut(s)	257
MreI	CGCCGGCG	1 cut(s)	274
MroNI	GCCGGC	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	5 cut(s)	108, 155, 225, 275, 409
MunI	CAATTG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	57, 189
MwoI	GCNNNNNNNGC	5 cut(s)	11, 54, 225, 284, 293
NaeI	GCCGGC	1 cut(s)	276
NdeII	GATC	4 cut(s)	75, 110, 145, 210
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	205, 304
NlaIV	GGNNCC	2 cut(s)	112, 223
NmuCI	GTSAC	1 cut(s)	310
NruI	TCGCGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	16, 56, 221, 298, 329, 332
PleI	GAGTC	2 cut(s)	165, 230
PpsI	GAGTC	2 cut(s)	165, 230
PspN4I	GGNNCC	2 cut(s)	112, 223
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	110
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
Sau3AI	GATC	4 cut(s)	75, 110, 145, 210
SchI	GAGTC	2 cut(s)	165, 230
SetI	ASST	3 cut(s)	69, 329, 366
SfaNI	GCATC	2 cut(s)	234, 375
SfcI	CTRYAG	1 cut(s)	117
SgrAI	CRCCGGYG	2 cut(s)	274, 408
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	26, 251
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	9 cut(s)	15, 46, 52, 55, 219, 228, 272, 297, 320
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	258, 282
TaaI	ACNGT	3 cut(s)	310, 316, 441
TaqI	TCGA	4 cut(s)	42, 213, 234, 351
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	26, 251
TauI	GCSGC	4 cut(s)	17, 57, 222, 299
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	327, 330
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.