Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

44546566 .. 44547351

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTCCGACGCCGCCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCCGCGACCGAGATCTCCCTCCGATCATCCCTTTCATCATGGGCTTTGCCGTTGCCGGATCCACGACAGACTCCGATCAACAGCAAACAAACGATTGTAGACAGGAGCGTGTTAATAGACTCGTCGTCATCAATCGCGAGGAGCAGAACATGGTGGTGATTGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCGAATTGGCCAAGGACGGTCACCCGCCGACGTCCAAGGCCTCCATCGCCGCCATGCCGACGGTGACGGTTGTGGAAAGCAGCCGCGAGTGTCCGATTTGCCTCGACCAGTTTGAGTATGTGACGGAGGCGATAACGGGTCCGGTTTCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

133

Amino Acids

14.55

Weight (kDa)

4.56

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	4 cut(s)	57, 189, 249, 333
AciI	CCGC	9 cut(s)	15, 46, 52, 55, 219, 228, 272, 297, 331
AclWI	GGATC	2 cut(s)	105, 118
AcoI	YGGCCR	1 cut(s)	255
AcyI	GRCGYC	2 cut(s)	12, 278
AhdI	GACNNNNNGTC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	105, 118
AoxI	GGCC	2 cut(s)	255, 285
ApeKI	GCWGC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	3 cut(s)	220, 260, 322
AvaII	GGWCC	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	2, 86
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	400
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
BlsI	GCNGC	6 cut(s)	16, 56, 221, 298, 329, 332
Bme18I	GGWCC	1 cut(s)	386
BmeRI	GACNNNNNGTC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	112, 223, 387
BmsI	GCATC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BsaHI	GRCGYC	2 cut(s)	12, 278
BsaJI	CCNNGG	2 cut(s)	258, 282
BsaWI	WCCGGW	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	258, 282
BseGI	GGATG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	339
Bsh1236I	CGCG	4 cut(s)	57, 189, 249, 333
Bsh1285I	CGRYCG	2 cut(s)	46, 61
BshFI	GGCC	2 cut(s)	257, 287
BsiEI	CGRYCG	2 cut(s)	46, 61
BsiSI	CCGG	3 cut(s)	108, 225, 389
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	257, 287
Bsp143I	GATC	4 cut(s)	64, 75, 110, 127
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	9 cut(s)	15, 46, 52, 55, 219, 228, 272, 297, 331
BspANI	GGCC	2 cut(s)	257, 287
BspFNI	CGCG	4 cut(s)	57, 189, 249, 333
BspLI	GGNNCC	3 cut(s)	112, 223, 387
BspPI	GGATC	2 cut(s)	105, 118
BsrBI	CCGCTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	258, 282
BssMI	GATC	4 cut(s)	64, 75, 110, 127
BssNI	GRCGYC	2 cut(s)	12, 278
BssT1I	CCWWGG	2 cut(s)	258, 282
Bst4CI	ACNGT	3 cut(s)	266, 310, 316
BstACI	GRCGYC	2 cut(s)	12, 278
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	4 cut(s)	57, 189, 249, 333
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	4 cut(s)	67, 78, 113, 130
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	64, 75, 110, 127
BstMCI	CGRYCG	2 cut(s)	46, 61
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 54, 225, 293
BstPI	GGTNACC	1 cut(s)	266
BstUI	CGCG	4 cut(s)	57, 189, 249, 333
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	64, 110
BstYI	RGATCY	2 cut(s)	64, 110
BsuRI	GGCC	2 cut(s)	257, 287
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	78
BtuMI	TCGCGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	1 cut(s)	20
CviAII	CATG	3 cut(s)	91, 202, 301
CviJI	RGCY	6 cut(s)	5, 96, 222, 257, 287, 330
CviKI_1	RGCY	6 cut(s)	5, 96, 222, 257, 287, 330
DpnI	GATC	4 cut(s)	66, 77, 112, 129
DpnII	GATC	4 cut(s)	64, 75, 110, 127
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	176
EciI	GGCGGA	2 cut(s)	41, 243
Eco130I	CCWWGG	2 cut(s)	258, 282
Eco147I	AGGCCT	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	258, 282
ErhI	CCWWGG	2 cut(s)	258, 282
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	94, 205, 304
FaiI	YATR	4 cut(s)	92, 203, 302, 366
FatI	CATG	3 cut(s)	90, 201, 300
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
FspBI	CTAG	1 cut(s)	400
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
HaeIII	GGCC	2 cut(s)	257, 287
HapII	CCGG	3 cut(s)	108, 225, 389
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	2 cut(s)	12, 278
Hin1II	CATG	3 cut(s)	94, 205, 304
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	4 cut(s)	122, 171, 231, 236
HpaII	CCGG	3 cut(s)	108, 225, 389
HphI	GGTGA	3 cut(s)	220, 260, 322
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	6 cut(s)	10, 75, 127, 243, 342, 397
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	4 cut(s)	14, 179, 280, 310
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	266, 310, 316
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 54, 225, 293
HpySE526I	ACGT	1 cut(s)	278
Hsp92I	GRCGYC	2 cut(s)	12, 278
Hsp92II	CATG	3 cut(s)	94, 205, 304
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	64, 75, 110, 127
LmnI	GCTCC	3 cut(s)	157, 193, 227
LpnPI	CCDG	4 cut(s)	121, 140, 238, 368
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	400
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	3 cut(s)	266, 310, 367
MalI	GATC	4 cut(s)	66, 77, 112, 129
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	4 cut(s)	64, 75, 110, 127
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	2 cut(s)	64, 110
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	26, 251
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	3 cut(s)	116, 165, 230
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	59, 81, 184, 298, 359, 367
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	3 cut(s)	108, 225, 389
MvnI	CGCG	4 cut(s)	57, 189, 249, 333
MwoI	GCNNNNNNNGC	4 cut(s)	11, 54, 225, 293
NdeII	GATC	4 cut(s)	64, 75, 110, 127
NlaIII	CATG	3 cut(s)	94, 205, 304
NlaIV	GGNNCC	3 cut(s)	112, 223, 387
NmuCI	GTSAC	3 cut(s)	266, 310, 367
NruI	TCGCGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	16, 56, 221, 298, 329, 332
PleI	GAGTC	3 cut(s)	116, 165, 230
PpsI	GAGTC	3 cut(s)	116, 165, 230
PspEI	GGTNACC	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	112, 223, 387
PspPI	GGNCC	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	64, 110
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	6 cut(s)	15, 55, 220, 297, 328, 331
Sau3AI	GATC	4 cut(s)	64, 75, 110, 127
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	3 cut(s)	116, 165, 230
SetI	ASST	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	26, 251
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	9 cut(s)	15, 46, 52, 55, 219, 228, 272, 297, 331
SspMI	CTAG	1 cut(s)	400
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	258, 282
TaaI	ACNGT	3 cut(s)	266, 310, 316
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	3 cut(s)	42, 234, 351
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	26, 251
TauI	GCSGC	5 cut(s)	17, 57, 222, 299, 333
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	3 cut(s)	266, 310, 367
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	3 cut(s)	266, 310, 367
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	1 cut(s)	400
ZraI	GACGTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.