Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

4137652 .. 4138290

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATTCCGAACCTGAGTTCGCATCCTTTTTTGACTGGCTCACGAGGAGGGGTCGAGATCGAGAGCTCTCTGTGCTCATGCCCTTAATGTTAGGTGCAGTCGCCTCCGCCGCGACACTCGACCCGGAAAACCCAGATGGAGAAAACCCGGAAAGACGAACCCCGCGGGAGCGAATATTTCTCGTCGACCCTTTCAACCAACGCGTGGCGGTGATCGGAGGCGATTCGGACCTGGACTCGCTGCTGCAGGGGCTGGGTGGCAAGGACGGTCAGCCGCCTGCGTCGAAGGCGTCGATCGACGCCATGCCGAGTGTCAAGATTGTCGAGGCGGACGTCGGGTCTGAGTGCTCGATTTGCTTGGAGCAGTTTGAGGTCGACGGCGTGGCGAGGGAGATGCCTTGCAAGCACAGGTTTCATGGGGATTGTATAGAGACGTGGCTGAAGCTTCGTGGGTCGTGCCCGGTTTGCAGGTTTACGATGCCGGTTGAGGAGGAGGAGGTGCGGAAGAAGGGCGGTGAAGCAGGCGGAGAGGGAACGAGGGTCCACGGGGAGATTACGGTTAGGGTTTTTGTTCACAATGGCAGGAGAGCAAGCGAGGGTTCTGAGCAATCCAGCGATGATGAAACGATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

213

Amino Acids

23.28

Weight (kDa)

4.76

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	115 - 157	7.1e-15	Ring finger domain
zf-RING_11	PF17123	115 - 143	1e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	115 - 156	1.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	115 - 157	1e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	116 - 156	5.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	116 - 154	3.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	459
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccI	GTMKAC	2 cut(s)	186, 375
AccII	CGCG	3 cut(s)	113, 166, 204
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	3 cut(s)	290, 300, 333
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	196
AhdI	GACNNNNNGTC	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	435
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	67, 445
AluI	AGCT	2 cut(s)	67, 445
Alw21I	GWGCWC	3 cut(s)	69, 78, 350
Alw26I	GTCTC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	241, 244
AspS9I	GGNCC	2 cut(s)	229, 541
AsuC2I	CCSGG	3 cut(s)	125, 149, 461
AsuHPI	GGTGA	2 cut(s)	223, 527
AvaII	GGWCC	2 cut(s)	229, 541
BaeGI	GKGCMC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	43
Bbv12I	GWGCWC	3 cut(s)	69, 78, 350
BbvI	GCAGC	2 cut(s)	228, 231
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	3 cut(s)	125, 149, 461
BcoDI	GTCTC	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	459
BisI	GCNGC	4 cut(s)	111, 242, 245, 275
BlsI	GCNGC	4 cut(s)	112, 243, 246, 276
Bme1390I	CCNGG	4 cut(s)	125, 149, 233, 461
Bme18I	GGWCC	2 cut(s)	229, 541
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	229, 541
BmiI	GGNNCC	1 cut(s)	542
BmrFI	CCNGG	4 cut(s)	125, 149, 233, 461
BmsI	GCATC	4 cut(s)	32, 384, 468, 618
BpuMI	CCSGG	3 cut(s)	125, 149, 461
BsaHI	GRCGYC	3 cut(s)	290, 300, 333
BsaJI	CCNNGG	2 cut(s)	164, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	164, 544
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	3 cut(s)	6, 333, 594
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	4 cut(s)	61, 503, 506, 509
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	228, 231
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	3 cut(s)	113, 166, 204
Bsh1285I	CGRYCG	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	297
BsiHKAI	GWGCWC	3 cut(s)	69, 78, 350
BsiSI	CCGG	4 cut(s)	125, 149, 461, 482
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	425
BsmBI	CGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	4 cut(s)	69, 78, 350, 461
Bsp143I	GATC	3 cut(s)	58, 213, 294
BspCNI	CTCAG	3 cut(s)	7, 334, 595
BspFNI	CGCG	3 cut(s)	113, 166, 204
BspLI	GGNNCC	1 cut(s)	542
BspMAI	CTGCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	164, 544
BssMI	GATC	3 cut(s)	58, 213, 294
BssNI	GRCGYC	3 cut(s)	290, 300, 333
BssSI	CACGAG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	269, 559
BstACI	GRCGYC	3 cut(s)	290, 300, 333
BstC8I	GCNNGC	4 cut(s)	279, 404, 523, 592
BstDEI	CTNAG	3 cut(s)	15, 342, 603
BstDSI	CCRYGG	2 cut(s)	164, 544
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	3 cut(s)	113, 166, 204
BstKTI	GATC	3 cut(s)	61, 216, 297
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	3 cut(s)	58, 213, 294
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	7 cut(s)	73, 110, 250, 287, 354, 403, 465
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	4 cut(s)	123, 147, 231, 459
BstSFI	CTRYAG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	461
BstUI	CGCG	3 cut(s)	113, 166, 204
BstV1I	GCAGC	2 cut(s)	228, 231
BtgI	CCRYGG	2 cut(s)	164, 544
BtgZI	GCGATG	1 cut(s)	630
BtrI	CACGTC	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	4 cut(s)	279, 404, 523, 592
CaiI	CAGNNNCTG	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	229, 541
Cfr42I	CCGCGG	1 cut(s)	167
CseI	GACGC	3 cut(s)	270, 279, 308
CviAII	CATG	3 cut(s)	79, 304, 416
CviJI	RGCY	6 cut(s)	40, 67, 253, 274, 439, 445
CviKI_1	RGCY	6 cut(s)	40, 67, 253, 274, 439, 445
DdeI	CTNAG	3 cut(s)	15, 342, 603
DpnI	GATC	3 cut(s)	60, 215, 296
DpnII	GATC	3 cut(s)	58, 213, 294
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EciI	GGCGGA	3 cut(s)	97, 344, 540
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	229, 541
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	3 cut(s)	82, 307, 419
FaiI	YATR	4 cut(s)	80, 305, 417, 428
FatI	CATG	3 cut(s)	78, 303, 415
FauI	CCCGC	2 cut(s)	159, 171
FblI	GTMKAC	2 cut(s)	186, 375
Fnu4HI	GCNGC	4 cut(s)	111, 242, 245, 275
FokI	GGATG	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	111, 242, 245, 275
GluI	GCNGC	4 cut(s)	111, 242, 245, 275
GsaI	CCCAGC	1 cut(s)	257
HapII	CCGG	4 cut(s)	125, 149, 461, 482
HgaI	GACGC	3 cut(s)	270, 279, 308
Hin1I	GRCGYC	3 cut(s)	290, 300, 333
Hin1II	CATG	3 cut(s)	82, 307, 419
HincII	GTYRAC	2 cut(s)	187, 376
HindII	GTYRAC	2 cut(s)	187, 376
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	5, 224, 236
HpaII	CCGG	4 cut(s)	125, 149, 461, 482
HphI	GGTGA	2 cut(s)	223, 527
Hpy166II	GTNNAC	5 cut(s)	187, 376, 474, 544, 574
Hpy188I	TCNGA	5 cut(s)	10, 218, 229, 343, 604
Hpy188III	TCNNGA	4 cut(s)	43, 56, 62, 316
Hpy8I	GTNNAC	5 cut(s)	187, 376, 474, 544, 574
Hpy99I	CGWCG	6 cut(s)	188, 286, 295, 302, 338, 380
HpyAV	CCTTC	2 cut(s)	280, 502
HpyCH4III	ACNGT	2 cut(s)	269, 559
HpyCH4IV	ACGT	2 cut(s)	333, 434
HpyCH4V	TGCA	5 cut(s)	98, 247, 402, 468, 631
HpyF10VI	GCNNNNNNNGC	7 cut(s)	73, 110, 250, 287, 354, 403, 465
HpyF3I	CTNAG	3 cut(s)	15, 342, 603
HpySE526I	ACGT	2 cut(s)	333, 434
Hsp92I	GRCGYC	3 cut(s)	290, 300, 333
Hsp92II	CATG	3 cut(s)	82, 307, 419
KspI	CCGCGG	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	58, 213, 294
LmnI	GCTCC	2 cut(s)	169, 361
Lsp1109I	GCAGC	2 cut(s)	228, 231
LweI	GCATC	4 cut(s)	32, 384, 468, 618
MaeII	ACGT	2 cut(s)	333, 434
MalI	GATC	3 cut(s)	60, 215, 296
MboI	GATC	3 cut(s)	58, 213, 294
MboII	GAAGA	1 cut(s)	517
MhlI	GDGCHC	4 cut(s)	69, 78, 350, 461
MluI	ACGCGT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	4 cut(s)	125, 149, 461, 482
MspR9I	CCNGG	4 cut(s)	125, 149, 233, 461
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	3 cut(s)	113, 166, 204
MwoI	GCNNNNNNNGC	7 cut(s)	73, 110, 250, 287, 354, 403, 465
NciI	CCSGG	3 cut(s)	125, 149, 461
NdeII	GATC	3 cut(s)	58, 213, 294
NlaIII	CATG	3 cut(s)	82, 307, 419
NlaIV	GGNNCC	1 cut(s)	542
NmeAIII	GCCGAG	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	2 cut(s)	290, 330
PfeI	GAWTC	2 cut(s)	5, 224
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	112, 243, 246, 276
Ple19I	CGATCG	1 cut(s)	297
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	2 cut(s)	229, 541
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	69
SacII	CCGCGG	1 cut(s)	167
SalI	GTCGAC	2 cut(s)	185, 374
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	4 cut(s)	111, 242, 245, 275
Sau3AI	GATC	3 cut(s)	58, 213, 294
Sau96I	GGNCC	2 cut(s)	229, 541
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	4 cut(s)	125, 149, 233, 461
SduI	GDGCHC	4 cut(s)	69, 78, 350, 461
SfaNI	GCATC	4 cut(s)	32, 384, 468, 618
SfcI	CTRYAG	1 cut(s)	245
Sfr303I	CCGCGG	1 cut(s)	167
SgrBI	CCGCGG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	229, 541
SspI	AATATT	1 cut(s)	177
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	123, 147, 231, 459
TaaI	ACNGT	2 cut(s)	269, 559
TaiI	ACGT	2 cut(s)	336, 437
TauI	GCSGC	2 cut(s)	113, 277
TfiI	GAWTC	2 cut(s)	5, 224
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseI	GCWGC	2 cut(s)	241, 244
TspDTI	ATGAA	2 cut(s)	404, 636
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	229, 541
XmiI	GTMKAC	2 cut(s)	186, 375
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.