Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

24308007 .. 24308598

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002010

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCGCGAATTGGCCAAGGACGGTCACCTGCCGACTTCCAAGGCCTCCATCGTCGCCATGCCGACGGTGACAGTTGCCGAAAGCAGCCGCGAGTGTCCGATTTGCCTCGACCAGTTTGAGGTCGGCGGAGAGGCCAAAGAGATGCCGTGCAGTCATTTGTTTCATGGGGATTGTGTGGAGAAGTGGTTGAAGGTTCACTGGACTTGCCCGGTTTGCTGGTTCACCATGCCGGCAGATAAGGAAGAAGAGTCGGAGAAGAAGAATGAGCCTGGAATATCTGTCAGCATCTTTATAAGGGCAACAAGTGAAGATTCAGATCGAACTAGCGATTTGCATGATTTGACTCCAAGTGAAGCAGTAGTTAATGATGATGCACGTGATGGAGGAGATAACAGGTCTGGTTTCAGACCAGCCCGGAGTGAAATTGAGGAAGGAAGGCTTGACGGCGAAGCACCCGGTGGTGACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

157

Amino Acids

17.08

Weight (kDa)

4.63

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	31 - 72	1.9e-14	Ring finger domain
zf-RING_11	PF17123	31 - 59	1.6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	31 - 72	8.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	32 - 72	5.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	32 - 70	9.4e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AarI	CACCTGC	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	36
AccII	CGCG	2 cut(s)	6, 90
AciI	CCGC	2 cut(s)	88, 126
AcoI	YGGCCR	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	377
AdeI	CACNNNGTG	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	268
AoxI	GGCC	3 cut(s)	12, 42, 132
ApeKI	GCWGC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	6
AsuC2I	CCSGG	3 cut(s)	209, 415, 456
AsuHPI	GGTGA	3 cut(s)	17, 79, 214
BalI	TGGCCA	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	56, 374
BceAI	ACGGC	2 cut(s)	130, 460
BciT130I	CCWGG	1 cut(s)	270
BcnI	CCSGG	3 cut(s)	209, 415, 456
BfaI	CTAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	36
BisI	GCNGC	2 cut(s)	85, 88
BlsI	GCNGC	2 cut(s)	86, 89
Bme1390I	CCNGG	4 cut(s)	209, 270, 415, 456
BmrFI	CCNGG	4 cut(s)	209, 270, 415, 456
BmsI	GCATC	3 cut(s)	132, 294, 361
BpuMI	CCSGG	3 cut(s)	209, 415, 456
BsaAI	YACGTR	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	15, 39
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	112, 203
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	15, 39
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	112, 203
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	6, 90
BshFI	GGCC	3 cut(s)	14, 44, 134
BsiSI	CCGG	4 cut(s)	209, 230, 415, 456
BslI	CCNNNNNNNGG	1 cut(s)	118
BsnI	GGCC	3 cut(s)	14, 44, 134
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	88, 126
BspANI	GGCC	3 cut(s)	14, 44, 134
BspFNI	CGCG	2 cut(s)	6, 90
BspMI	ACCTGC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	112, 203
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	15, 39
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	2 cut(s)	15, 39
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	23, 67, 73
Bst6I	CTCTTC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	23
BstFNI	CGCG	2 cut(s)	6, 90
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	270
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	4 cut(s)	207, 268, 413, 454
BstUI	CGCG	2 cut(s)	6, 90
BstV1I	GCAGC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	14, 44, 134
BtsIMutI	CAGTG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	229
CviAII	CATG	4 cut(s)	58, 164, 226, 335
CviJI	RGCY	8 cut(s)	14, 44, 87, 134, 268, 413, 439, 468
CviKI_1	RGCY	8 cut(s)	14, 44, 87, 134, 268, 413, 439, 468
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	15, 39
Eco147I	AGGCCT	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	15, 39
ErhI	CCWWGG	2 cut(s)	15, 39
FaeI	CATG	4 cut(s)	61, 167, 229, 338
FaiI	YATR	5 cut(s)	59, 165, 227, 293, 336
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	4 cut(s)	57, 163, 225, 334
Fnu4HI	GCNGC	2 cut(s)	85, 88
Fsp4HI	GCNGC	2 cut(s)	85, 88
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	85, 88
HaeIII	GGCC	3 cut(s)	14, 44, 134
HapII	CCGG	4 cut(s)	209, 230, 415, 456
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	61, 167, 229, 338
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	248, 311, 343
HpaII	CCGG	4 cut(s)	209, 230, 415, 456
HphI	GGTGA	3 cut(s)	17, 79, 214
Hpy166II	GTNNAC	2 cut(s)	196, 222
Hpy188I	TCNGA	4 cut(s)	99, 253, 316, 407
Hpy8I	GTNNAC	2 cut(s)	196, 222
Hpy99I	CGWCG	2 cut(s)	56, 67
HpyAV	CCTTC	3 cut(s)	184, 425, 429
HpyCH4III	ACNGT	3 cut(s)	23, 67, 73
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	150, 334, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	4 cut(s)	61, 167, 229, 338
HspAI	GCGC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	316
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	3 cut(s)	132, 294, 361
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	3 cut(s)	23, 67, 461
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	5 cut(s)	254, 257, 268, 271, 320
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	2 cut(s)	8, 423
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	257, 337
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	55, 112, 116, 124, 377, 421
Mox20I	TGGCCA	1 cut(s)	14
MroNI	GCCGGC	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	4 cut(s)	209, 230, 415, 456
MspR9I	CCNGG	4 cut(s)	209, 270, 415, 456
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	2 cut(s)	6, 90
MwoI	GCNNNNNNNGC	1 cut(s)	213
NaeI	GCCGGC	1 cut(s)	231
NciI	CCSGG	3 cut(s)	209, 415, 456
NdeII	GATC	1 cut(s)	316
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	61, 167, 229, 338
NmuCI	GTSAC	3 cut(s)	23, 67, 461
PaqCI	CACCTGC	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	86, 89
PleI	GAGTC	2 cut(s)	256, 337
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	2 cut(s)	256, 337
Ppu21I	YACGTR	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	268
PspCI	CACGTG	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	85, 88
Sau3AI	GATC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	257, 337
ScrFI	CCNGG	4 cut(s)	209, 270, 415, 456
SetI	ASST	5 cut(s)	30, 123, 195, 379, 398
SfaNI	GCATC	3 cut(s)	132, 294, 361
Sse9I	AATT	2 cut(s)	8, 423
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	88, 126
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	4 cut(s)	207, 268, 413, 454
StyI	CCWWGG	2 cut(s)	15, 39
TaaI	ACNGT	3 cut(s)	23, 67, 73
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	2 cut(s)	108, 319
TasI	AATT	2 cut(s)	8, 423
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	3 cut(s)	23, 67, 461
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	3 cut(s)	23, 67, 461
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	203
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.