Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Forward (+)

48049703 .. 48050274

Gene Structure 572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTCCGACGCTGCCGTCTTCCAATTTGCTTCCTTCTTTGACCGCCTCCGCCGTGATCGAGATCTCCCTCCTATCATCCCTTTCATCATGGGCTTTGCCGTCACCGGATCCACGACAGACTCCGATCAACAACAAACCGACGATGGTAGACTAGAGCGTGTTAATAGACTCGTCGTCATAAATCGCGAGGAGCAGAACATGGTAGTGATTGAGAGCGGATCTGGCGGAATAGTCTCTATGATGCGCGAATTGACCAAGGACGGCCACCCGCCGACGCCCAAGGCCTCCATTGCCACCATGCCGACGGTGAAGGTTGCAGAAAGCAGCCGCGAGTGTCCGATTTGCCTCGACCAGTTTGAGGTTGGCGGAGAGACCAAAGAGATACTTTGCAGTCATTTGTTTCATGGGGATTGTGTGGAGAAGTGGTTGAAGGTTCACGGGACTTGCTCGGTTTGCTGGTTCATGATGCTAGCGGACGAGGAAGAAGAGTTGGAGAAGAAGAATGAACCTGGAATTTCTGTCAGCATCTTTATAAGGGCAACAAGTGAAGATTCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

187

Amino Acids

20.9

Weight (kDa)

4.75

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 153	2e-12	Ring finger domain
zf-RING_11	PF17123	112 - 140	4.9e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	112 - 153	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	113 - 153	2.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	3 cut(s)	189, 249, 333
AciI	CCGC	8 cut(s)	46, 52, 219, 228, 272, 331, 369, 476
AclWI	GGATC	3 cut(s)	105, 118, 229
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	433
AhdI	GACNNNNNGTC	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	241, 368
AlwI	GGATC	3 cut(s)	105, 118, 229
AoxI	GGCC	2 cut(s)	265, 285
ApeKI	GCWGC	2 cut(s)	14, 327
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	97, 322
AsuNHI	GCTAGC	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	4 cut(s)	2, 39, 86, 280
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	241, 368
BfaI	CTAG	2 cut(s)	155, 473
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	15, 328, 331
BlsI	GCNGC	3 cut(s)	16, 329, 332
Bme1390I	CCNGG	1 cut(s)	513
BmeRI	GACNNNNNGTC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	234, 459, 537
BmtI	GCTAGC	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	258, 282
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	258, 282
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	339
Bsh1236I	CGCG	3 cut(s)	189, 249, 333
BshFI	GGCC	2 cut(s)	267, 287
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	241, 368
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	267, 287
Bso31I	GGTCTC	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	58, 64, 110, 127, 221
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	8 cut(s)	46, 52, 219, 228, 272, 331, 369, 476
BspANI	GGCC	2 cut(s)	267, 287
BspFNI	CGCG	3 cut(s)	189, 249, 333
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	112
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	3 cut(s)	105, 118, 229
BspTNI	GGTCTC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	258, 282
BssMI	GATC	5 cut(s)	58, 64, 110, 127, 221
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	258, 282
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	3 cut(s)	189, 249, 333
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	5 cut(s)	61, 67, 113, 130, 224
BstMAI	GTCTC	2 cut(s)	241, 368
BstMBI	GATC	5 cut(s)	58, 64, 110, 127, 221
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 225, 293, 456
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstUI	CGCG	3 cut(s)	189, 249, 333
BstV1I	GCAGC	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	3 cut(s)	64, 110, 221
BstYI	RGATCY	3 cut(s)	64, 110, 221
BsuRI	GGCC	2 cut(s)	267, 287
BtsCI	GGATG	1 cut(s)	78
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	249
CseI	GACGC	2 cut(s)	20, 286
CviAII	CATG	5 cut(s)	91, 202, 301, 407, 466
CviJI	RGCY	5 cut(s)	5, 96, 267, 287, 330
CviKI_1	RGCY	5 cut(s)	5, 96, 267, 287, 330
DpnI	GATC	5 cut(s)	60, 66, 112, 129, 223
DpnII	GATC	5 cut(s)	58, 64, 110, 127, 221
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	483
EciI	GGCGGA	3 cut(s)	41, 243, 384
Eco130I	CCWWGG	2 cut(s)	258, 282
Eco147I	AGGCCT	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	258, 282
ErhI	CCWWGG	2 cut(s)	258, 282
FaeI	CATG	5 cut(s)	94, 205, 304, 410, 469
FaiI	YATR	9 cut(s)	92, 182, 203, 242, 302, 408, 467, 536, 559
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	5 cut(s)	90, 201, 300, 406, 465
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	15, 328, 331
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	15, 328, 331
FspBI	CTAG	2 cut(s)	155, 473
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	3 cut(s)	15, 328, 331
HaeIII	GGCC	2 cut(s)	267, 287
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	2 cut(s)	20, 286
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	94, 205, 304, 410, 469
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	3 cut(s)	122, 171, 554
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	97, 322
Hpy166II	GTNNAC	2 cut(s)	152, 439
Hpy188I	TCNGA	3 cut(s)	10, 127, 342
Hpy188III	TCNNGA	3 cut(s)	62, 188, 466
Hpy8I	GTNNAC	2 cut(s)	152, 439
Hpy99I	CGWCG	5 cut(s)	14, 146, 179, 280, 310
HpyAV	CCTTC	3 cut(s)	46, 307, 427
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	320, 393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 225, 293, 456
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	5 cut(s)	94, 205, 304, 410, 469
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	58, 64, 110, 127, 221
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	121, 210, 368, 445, 498, 525
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	3 cut(s)	234, 459, 537
MaeI	CTAG	2 cut(s)	155, 473
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	5 cut(s)	60, 66, 112, 129, 223
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	5 cut(s)	58, 64, 110, 127, 221
MboII	GAAGA	6 cut(s)	13, 497, 500, 511, 514, 563
MflI	RGATCY	3 cut(s)	64, 110, 221
MluCI	AATT	3 cut(s)	26, 251, 516
MlyI	GAGTC	2 cut(s)	116, 165
MmeI	TCCRAC	2 cut(s)	33, 474
MnlI	CCTC	7 cut(s)	59, 81, 184, 298, 355, 359, 475
MseI	TTAA	2 cut(s)	165, 562
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	3 cut(s)	189, 249, 333
MwoI	GCNNNNNNNGC	4 cut(s)	11, 225, 293, 456
NdeII	GATC	5 cut(s)	58, 64, 110, 127, 221
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	94, 205, 304, 410, 469
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	103
NruI	TCGCGA	1 cut(s)	189
PagI	TCATGA	1 cut(s)	465
PceI	AGGCCT	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	16, 329, 332
PleI	GAGTC	2 cut(s)	116, 165
PpsI	GAGTC	2 cut(s)	116, 165
PsiI	TTATAA	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	112
PsuI	RGATCY	3 cut(s)	64, 110, 221
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	165, 562
SatI	GCNGC	3 cut(s)	15, 328, 331
Sau3AI	GATC	5 cut(s)	58, 64, 110, 127, 221
SchI	GAGTC	2 cut(s)	116, 165
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	4 cut(s)	318, 366, 438, 514
SfaNI	GCATC	3 cut(s)	234, 459, 537
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	26, 251, 516
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	8 cut(s)	46, 52, 219, 228, 272, 331, 369, 476
SspMI	CTAG	2 cut(s)	155, 473
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	258, 282
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	61, 351
TasI	AATT	3 cut(s)	26, 251, 516
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	2 cut(s)	165, 562
Tru9I	TTAA	2 cut(s)	165, 562
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	14, 327
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	5 cut(s)	76, 395, 454, 522, 546
XapI	RAATTY	1 cut(s)	516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	2 cut(s)	155, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.