Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008968

Physical Location & Seq

Genomic Coordinates Reverse (-)

60803955 .. 60804575

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTTCCGACGCCGCCGTCTCCCAATTCGCTTCCTTCTTCGACCGCCTCCGCCGCGACCGAGACCTCCCTCCGATCATCCCCTTCATCATGGGCTTGGCCGTCGCCGGATCCACGGCAGGCCCCGATCAACAGCAAACCGACGATCGTAGACCGGAGCGTGTTAACCGGCTCGTCGTCGTCAATCGCGAGGAGCAAAACATGGTGGTGATCGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCCAATTGGCCAAGGACGGCCACCCGCCGGCGTCCAAGGCCTCCATCGCCGCCATGCCGACGGTGACGGTTGCGGAAAGCGGCCGCGAGTGTCCGATTTGCCTCGACGAGTTTGAGGTCGGCGGAGAGGCCAAAGAGATGCCTTGCAGTCATTTGTTTCACGGGGATTGTGTTGAGAAGTGGTTGAAGGTTCACGGGACTTGCCCGGTTTGCCGGTTCACGATGCCGGCCGACGAGGAAGAAGAGCCGGAGAAGAAGAATGAGCCTGGAATTTCTGTCAGCATATTTATAAGGGCAACAAGTGAAGAGTCAGATCGAACTGGTGATTTGACTCCAAACGAAGCAGCAGCTGATGATGATCATATGCAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

206

Amino Acids

22.48

Weight (kDa)

4.65

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 154	1e-16	Ring finger domain
zf-RING_11	PF17123	112 - 140	1.1e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	112 - 153	1.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	113 - 153	1.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	113 - 151	4.8e-07	RING-type zinc-finger
zf-rbx1	PF12678	127 - 154	7.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26800
fragaria_vesca	FvH4_4g31250
malus_domestica	MD13G1071200.v1.1 MD16G1071900.v1.1
prunus_persica	Prupe.1G275700_v2.0.a1
pyrus_communis	pycom13g06390 pycom16g06220
rosa_chinensis	RchiOBHm_Chr4g0439691
rosa_laevigata	RLG00000002010 RLG00000006246 RLG00000020345
rosa_multiflora	Rmu_sc0010226.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380630
rosa_rugosa	Rorug03G0296200
rosa_samantha	Rh4AG265900 Rh4BG272000 Rh4BG383500 Rh4CG398200 Rh4DG378300 Rh5AG454500
rosa_wichuraiana	Rw2G029670 Rw4G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	3 cut(s)	57, 189, 333
AclWI	GGATC	2 cut(s)	105, 118
AcoI	YGGCCR	5 cut(s)	99, 255, 265, 328, 474
AcsI	RAATTY	1 cut(s)	516
AcyI	GRCGYC	2 cut(s)	12, 278
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	1 cut(s)	596
AluI	AGCT	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	25, 57
AlwI	GGATC	2 cut(s)	105, 118
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	8 cut(s)	99, 121, 255, 265, 285, 328, 375, 474
ApeKI	GCWGC	2 cut(s)	590, 593
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	220, 322, 581
BalI	TGGCCA	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	602, 605
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	4 cut(s)	2, 86, 132, 280
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	25, 57
BisI	GCNGC	8 cut(s)	15, 55, 220, 297, 328, 331, 591, 594
BlsI	GCNGC	8 cut(s)	16, 56, 221, 298, 329, 332, 592, 595
Bme1390I	CCNGG	2 cut(s)	452, 513
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	112, 124, 223
BmrFI	CCNGG	2 cut(s)	452, 513
BmsI	GCATC	3 cut(s)	234, 375, 459
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpuMI	CCSGG	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	603
BsaHI	GRCGYC	2 cut(s)	12, 278
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	114, 258, 282
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	4 cut(s)	168, 274, 459, 472
Bse1I	ACTGG	1 cut(s)	571
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	114, 258, 282
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	206
BseX3I	CGGCCG	2 cut(s)	328, 474
BseXI	GCAGC	2 cut(s)	602, 605
Bsh1236I	CGCG	3 cut(s)	57, 189, 333
Bsh1285I	CGRYCG	5 cut(s)	46, 61, 148, 331, 477
BshFI	GGCC	8 cut(s)	101, 123, 257, 267, 287, 330, 377, 476
BsiEI	CGRYCG	5 cut(s)	46, 61, 148, 331, 477
BsiSI	CCGG	9 cut(s)	108, 155, 169, 225, 275, 452, 460, 473, 494
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	25, 57
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	8 cut(s)	101, 123, 257, 267, 287, 330, 377, 476
Bso31I	GGTCTC	1 cut(s)	57
Bsp143I	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
Bsp68I	TCGCGA	1 cut(s)	189
BspANI	GGCC	8 cut(s)	101, 123, 257, 267, 287, 330, 377, 476
BspFNI	CGCG	3 cut(s)	57, 189, 333
BspLI	GGNNCC	3 cut(s)	112, 124, 223
BspPI	GGATC	2 cut(s)	105, 118
BspQI	GCTCTTC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	4 cut(s)	168, 274, 459, 472
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	4 cut(s)	168, 274, 459, 472
BssECI	CCNNGG	3 cut(s)	114, 258, 282
BssMI	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
BssNI	GRCGYC	2 cut(s)	12, 278
BssT1I	CCWWGG	2 cut(s)	258, 282
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	310, 316
Bst6I	CTCTTC	2 cut(s)	483, 546
BstACI	GRCGYC	2 cut(s)	12, 278
BstC8I	GCNNGC	3 cut(s)	121, 276, 474
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	3 cut(s)	57, 189, 333
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	7 cut(s)	78, 113, 130, 148, 213, 562, 607
BstMAI	GTCTC	2 cut(s)	25, 57
BstMBI	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
BstMCI	CGRYCG	5 cut(s)	46, 61, 148, 331, 477
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 54, 225, 284, 293, 456
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	2 cut(s)	450, 511
BstUI	CGCG	3 cut(s)	57, 189, 333
BstV1I	GCAGC	2 cut(s)	602, 605
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BstZI	CGGCCG	2 cut(s)	328, 474
BsuRI	GGCC	8 cut(s)	101, 123, 257, 267, 287, 330, 377, 476
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	78
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	121, 276, 474
CaiI	CAGNNNCTG	1 cut(s)	596
CciNI	GCGGCCGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	4 cut(s)	168, 274, 459, 472
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	2 cut(s)	20, 267
CviAII	CATG	3 cut(s)	91, 202, 301
DpnI	GATC	7 cut(s)	77, 112, 129, 147, 212, 561, 606
DpnII	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	5 cut(s)	99, 255, 265, 328, 474
EagI	CGGCCG	2 cut(s)	328, 474
Eam1104I	CTCTTC	2 cut(s)	483, 546
EarI	CTCTTC	2 cut(s)	483, 546
EciI	GGCGGA	3 cut(s)	41, 243, 384
EclXI	CGGCCG	2 cut(s)	328, 474
Eco130I	CCWWGG	2 cut(s)	258, 282
Eco147I	AGGCCT	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	57
Eco52I	CGGCCG	2 cut(s)	328, 474
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	258, 282
ErhI	CCWWGG	2 cut(s)	258, 282
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	94, 205, 304
FaiI	YATR	7 cut(s)	92, 203, 302, 530, 536, 609, 611
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	3 cut(s)	90, 201, 300
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	609
FbaI	TGATCA	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	8 cut(s)	15, 55, 220, 297, 328, 331, 591, 594
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	8 cut(s)	15, 55, 220, 297, 328, 331, 591, 594
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	8 cut(s)	15, 55, 220, 297, 328, 331, 591, 594
HaeIII	GGCC	8 cut(s)	101, 123, 257, 267, 287, 330, 377, 476
HapII	CCGG	9 cut(s)	108, 155, 169, 225, 275, 452, 460, 473, 494
HgaI	GACGC	2 cut(s)	20, 267
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	2 cut(s)	12, 278
Hin1II	CATG	3 cut(s)	94, 205, 304
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	231, 236, 554, 577
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	9 cut(s)	108, 155, 169, 225, 275, 452, 460, 473, 494
HphI	GGTGA	3 cut(s)	220, 322, 581
Hpy166II	GTNNAC	4 cut(s)	152, 166, 439, 465
Hpy188I	TCNGA	5 cut(s)	10, 75, 243, 342, 559
Hpy188III	TCNNGA	3 cut(s)	188, 214, 466
Hpy8I	GTNNAC	4 cut(s)	152, 166, 439, 465
Hpy99I	CGWCG	8 cut(s)	14, 107, 146, 179, 182, 310, 356, 482
HpyAV	CCTTC	3 cut(s)	46, 94, 427
HpyCH4III	ACNGT	2 cut(s)	310, 316
HpyCH4V	TGCA	2 cut(s)	393, 613
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 54, 225, 284, 293, 456
Hsp92I	GRCGYC	2 cut(s)	12, 278
Hsp92II	CATG	3 cut(s)	94, 205, 304
HspAI	GCGC	1 cut(s)	247
KroI	GCCGGC	2 cut(s)	274, 472
KroNI	GCCGGC	2 cut(s)	276, 474
Ksp22I	TGATCA	1 cut(s)	604
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	157, 193, 227
Lsp1109I	GCAGC	2 cut(s)	602, 605
LweI	GCATC	3 cut(s)	234, 375, 459
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	7 cut(s)	77, 112, 129, 147, 212, 561, 606
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
MboII	GAAGA	6 cut(s)	31, 497, 500, 511, 514, 563
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	110
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	3 cut(s)	26, 251, 516
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	3 cut(s)	230, 563, 571
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	59, 77, 81, 184, 298, 355, 359, 367, 475
Mox20I	TGGCCA	1 cut(s)	257
MreI	CGCCGGCG	1 cut(s)	274
MroNI	GCCGGC	2 cut(s)	274, 472
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	9 cut(s)	108, 155, 169, 225, 275, 452, 460, 473, 494
MspR9I	CCNGG	2 cut(s)	452, 513
MunI	CAATTG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	3 cut(s)	57, 189, 333
MwoI	GCNNNNNNNGC	6 cut(s)	11, 54, 225, 284, 293, 456
NaeI	GCCGGC	2 cut(s)	276, 474
NciI	CCSGG	1 cut(s)	452
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
NgoMIV	GCCGGC	2 cut(s)	274, 472
NlaIII	CATG	3 cut(s)	94, 205, 304
NlaIV	GGNNCC	3 cut(s)	112, 124, 223
NmuCI	GTSAC	1 cut(s)	310
NotI	GCGGCCGC	1 cut(s)	328
NruI	TCGCGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	2 cut(s)	276, 474
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	8 cut(s)	16, 56, 221, 298, 329, 332, 592, 595
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	3 cut(s)	230, 562, 571
PpsI	GAGTC	3 cut(s)	230, 562, 571
PsiI	TTATAA	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	3 cut(s)	112, 124, 223
PspPI	GGNCC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	110
PvuI	CGATCG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	596
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	8 cut(s)	15, 55, 220, 297, 328, 331, 591, 594
Sau3AI	GATC	7 cut(s)	75, 110, 127, 145, 210, 559, 604
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	3 cut(s)	230, 563, 571
ScrFI	CCNGG	2 cut(s)	452, 513
SetI	ASST	4 cut(s)	69, 366, 438, 598
SfaNI	GCATC	3 cut(s)	234, 375, 459
SgrAI	CRCCGGYG	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	26, 251, 516
SseBI	AGGCCT	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	450, 511
StyI	CCWWGG	2 cut(s)	258, 282
TaaI	ACNGT	2 cut(s)	310, 316
TaqI	TCGA	5 cut(s)	42, 213, 234, 351, 562
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	26, 251, 516
TauI	GCSGC	6 cut(s)	17, 57, 222, 299, 330, 333
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	590, 593
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	76
XapI	RAATTY	1 cut(s)	516
XmiI	GTMKAC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.