Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Reverse (-)

9412783 .. 9417604

Gene Structure 4822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATGATAATGATTGTGTTTTGGCCAACATTTTGGCTGCTCATTACCTTAGCTCTTTTGACCCTGTTAGAGCCAGATCATATGCTCTAGCTGCAGAATCCCGTCTTGGGAAAGCCACACTGTATGAGAAGGCAGTTTTCGAGGCTGTTAGTTACTTACTCTCTGAGAATATGGACGACGATGTGGCTTTGGAGTTACACTCTAAGCTCTTGAAAAAGTTCCCGAAAGATTTGCTATCTTGGAAGAGAGTAGAGACTCTGTGTTCCTACATGGGTCGACACGATCTCTCTTTGCCTCTTTTCCGGAAGATTCTACCGCAGAATGAAGGCCAAGTTTATGTTAATGGTATGCTTGCATTCTGTTTAATTGAGCTTGGACATTTGAGAGAAGCTGAGGAAGCTGCTAGGAAAGGCTGTGAGATCAACGAAAACGATTCTTGGGCTCATCACGCCTTATGTCATGTTCTTCAAACTGAATGTCGTTTTAAAGAAGCAGTAAAGTTCATGGAAGAACACTCAGATTCATGGGATTCTTGCTCATCCTTAAGGTTTTCGCATAATTGGTGGCACGTAGCTGTTTGTTACTTGGAAGGAGGGTCTCACATAAGTAAGGTAGAAGAAGTATATGATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAACTAGATGATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTGAGTAAAGTTGAAAAAACTTCACTAGCACATGAATTGCTCGAGGGCCTCAAGTCCCGAACATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAGAACTGCTTGGATTAGACTTTGACGCTGCTAACTATAAGGTGATTGGAGGATCGGGTTTACAGATGGATGTTTTTAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCTTGTGGCGTTTGCTGGAAGAGAGTTACTCAATGGAAGGCAAGGAAAAAGCTGGTATAAGTGCAGGTAAGAAAGCAAAAGCATTGGAATCTTCATATTTCAAGTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

483

Amino Acids

54.81

Weight (kDa)

5.4

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1394
AccI	GTMKAC	1 cut(s)	448
AccII	CGCG	1 cut(s)	894
AccIII	TCCGGA	1 cut(s)	474
AciI	CCGC	3 cut(s)	488, 894, 1071
AclWI	GGATC	1 cut(s)	1225
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	69, 1143
AfaI	GTAC	3 cut(s)	16, 1256, 1302
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflII	CTTAAG	1 cut(s)	715
AgsI	TTSAA	7 cut(s)	28, 385, 641, 1019, 1287, 1298, 1441
AjnI	CCWGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
Alw21I	GWGCWC	1 cut(s)	1336
Alw26I	GTCTC	2 cut(s)	419, 774
AlwI	GGATC	1 cut(s)	1225
Ama87I	CYCGRG	1 cut(s)	1046
Aor13HI	TCCGGA	1 cut(s)	474
AoxI	GGCC	4 cut(s)	6, 195, 499, 1051
ApeKI	GCWGC	4 cut(s)	209, 263, 572, 1193
ArsI	GACNNNNNNTTYG	4 cut(s)	634, 666, 965, 997
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	1051
AsuHPI	GGTGA	3 cut(s)	166, 1219, 1324
AvaI	CYCGRG	1 cut(s)	1046
BalI	TGGCCA	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	1336
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	196, 250, 559, 1180
BccI	CCATC	3 cut(s)	902, 1225, 1322
BceAI	ACGGC	1 cut(s)	1291
BcgI	CGANNNNNNTGC	4 cut(s)	385, 419, 821, 855
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	419, 774
BfaI	CTAG	8 cut(s)	161, 260, 576, 843, 902, 926, 1031, 1304
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	715
BfuAI	ACCTGC	1 cut(s)	1394
BisI	GCNGC	4 cut(s)	210, 264, 573, 1194
BlsI	GCNGC	4 cut(s)	211, 265, 574, 1195
BmcAI	AGTACT	1 cut(s)	1302
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	1046
BmgT120I	GGNCC	1 cut(s)	1051
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	3 cut(s)	823, 850, 1089
BplI	GAGNNNNNCTC	4 cut(s)	356, 388, 1352, 1384
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	2 cut(s)	221, 564
BpuEI	CTTGAG	1 cut(s)	1040
BsaAI	YACGTR	1 cut(s)	742
BsaI	GGTCTC	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	939, 980
Bse3DI	GCAATG	2 cut(s)	96, 966
BseAI	TCCGGA	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	125
BseGI	GGATG	4 cut(s)	710, 865, 1067, 1240
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	2 cut(s)	96, 966
BseMII	CTCAG	3 cut(s)	327, 555, 702
BseNI	ACTGG	2 cut(s)	939, 980
BseXI	GCAGC	4 cut(s)	196, 250, 559, 1180
BsgI	GTGCAG	1 cut(s)	1422
Bsh1236I	CGCG	1 cut(s)	894
BshFI	GGCC	4 cut(s)	8, 197, 501, 1053
BsiHKAI	GWGCWC	1 cut(s)	1336
BsiHKCI	CYCGRG	1 cut(s)	1046
BsiSI	CCGG	1 cut(s)	475
BslFI	GGGAC	1 cut(s)	1045
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	419, 774
BsmFI	GGGAC	1 cut(s)	1045
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	4 cut(s)	8, 197, 501, 1053
Bso31I	GGTCTC	1 cut(s)	774
BsoBI	CYCGRG	1 cut(s)	1046
Bsp1286I	GDGCHC	2 cut(s)	616, 1336
Bsp13I	TCCGGA	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	248, 454, 591, 799, 1217
BspACI	CCGC	3 cut(s)	488, 894, 1071
BspANI	GGCC	4 cut(s)	8, 197, 501, 1053
BspCNI	CTCAG	3 cut(s)	328, 556, 701
BspEI	TCCGGA	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	894
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	1394
BspPI	GGATC	1 cut(s)	1225
BspTI	CTTAAG	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	774
BsrDI	GCAATG	2 cut(s)	96, 966
BsrI	ACTGG	2 cut(s)	939, 980
BssMI	GATC	5 cut(s)	248, 454, 591, 799, 1217
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	4 cut(s)	88, 136, 410, 1353
BstAFI	CTTAAG	1 cut(s)	715
BstBAI	YACGTR	1 cut(s)	742
BstC8I	GCNNGC	2 cut(s)	525, 1119
BstDEI	CTNAG	5 cut(s)	221, 336, 375, 564, 688
BstEII	GGTNACC	1 cut(s)	1312
BstF5I	GGATG	4 cut(s)	710, 865, 1067, 1240
BstFNI	CGCG	1 cut(s)	894
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	5 cut(s)	251, 457, 594, 802, 1220
BstMAI	GTCTC	2 cut(s)	419, 774
BstMBI	GATC	5 cut(s)	248, 454, 591, 799, 1217
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 569, 620
BstNI	CCWGG	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	1312
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	894
BstV1I	GCAGC	4 cut(s)	196, 250, 559, 1180
BstXI	CCANNNNNNTGG	2 cut(s)	131, 205
BsuRI	GGCC	4 cut(s)	8, 197, 501, 1053
BtsCI	GGATG	4 cut(s)	710, 865, 1067, 1240
BtsIMutI	CAGTG	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	1394
Cac8I	GCNNGC	2 cut(s)	525, 1119
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	1051
CseI	GACGC	1 cut(s)	1199
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	15, 1255, 1301
CviAII	CATG	7 cut(s)	19, 34, 442, 632, 676, 696, 1037
CviQI	GTAC	3 cut(s)	15, 1255, 1301
DdeI	CTNAG	5 cut(s)	221, 336, 375, 564, 688
DpnI	GATC	5 cut(s)	250, 456, 593, 801, 1219
DpnII	GATC	5 cut(s)	248, 454, 591, 799, 1217
DraI	TTTAAA	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	4 cut(s)	88, 136, 410, 1353
EarI	CTCTTC	4 cut(s)	88, 136, 410, 1353
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	69, 1143
Eco88I	CYCGRG	1 cut(s)	1046
Eco91I	GGTNACC	1 cut(s)	1312
EcoO109I	RGGNCCY	1 cut(s)	1051
EcoO65I	GGTNACC	1 cut(s)	1312
EcoRII	CCWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	7 cut(s)	22, 37, 445, 635, 679, 699, 1040
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FaqI	GGGAC	1 cut(s)	1045
FatI	CATG	7 cut(s)	18, 33, 441, 631, 675, 695, 1036
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	210, 264, 573, 1194
FokI	GGATG	4 cut(s)	697, 872, 1054, 1247
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	4 cut(s)	210, 264, 573, 1194
FspBI	CTAG	8 cut(s)	161, 260, 576, 843, 902, 926, 1031, 1304
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	210, 264, 573, 1194
GsuI	CTGGAG	1 cut(s)	842
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	8, 197, 501, 1053
HapII	CCGG	1 cut(s)	475
HgaI	GACGC	1 cut(s)	1199
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	7 cut(s)	22, 37, 445, 635, 679, 699, 1040
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	2 cut(s)	76, 449
HindII	GTYRAC	2 cut(s)	76, 449
HpaII	CCGG	1 cut(s)	475
HphI	GGTGA	3 cut(s)	166, 1219, 1324
Hpy166II	GTNNAC	5 cut(s)	15, 76, 449, 899, 1226
Hpy188I	TCNGA	5 cut(s)	88, 121, 337, 691, 807
Hpy188III	TCNNGA	7 cut(s)	161, 382, 394, 475, 917, 971, 1062
Hpy8I	GTNNAC	5 cut(s)	15, 76, 449, 899, 1226
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	6 cut(s)	145, 295, 491, 755, 1303, 1370
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	6 cut(s)	33, 96, 266, 527, 1102, 1403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 569, 620
HpyF3I	CTNAG	5 cut(s)	221, 336, 375, 564, 688
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	7 cut(s)	22, 37, 445, 635, 679, 699, 1040
HspAI	GCGC	1 cut(s)	167
Kpn2I	TCCGGA	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	5 cut(s)	248, 454, 591, 799, 1217
LmnI	GCTCC	1 cut(s)	1339
Lsp1109I	GCAGC	4 cut(s)	196, 250, 559, 1180
LweI	GCATC	3 cut(s)	823, 850, 1089
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	8 cut(s)	161, 260, 576, 843, 902, 926, 1031, 1304
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	6 cut(s)	323, 366, 752, 1266, 1312, 1364
MalI	GATC	5 cut(s)	250, 456, 593, 801, 1219
MboI	GATC	5 cut(s)	248, 454, 591, 799, 1217
MhlI	GDGCHC	2 cut(s)	616, 1336
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	537, 730, 996, 1040
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	421, 935
Mox20I	TGGCCA	1 cut(s)	197
Mph1103I	ATGCAT	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	474
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	6 cut(s)	108, 513, 536, 657, 716, 1242
MslI	CAYNNNNRTG	1 cut(s)	28
Msp20I	TGGCCA	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	1 cut(s)	475
MspR9I	CCNGG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	894
MwoI	GCNNNNNNNGC	3 cut(s)	263, 569, 620
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	5 cut(s)	248, 454, 591, 799, 1217
NlaIII	CATG	7 cut(s)	22, 37, 445, 635, 679, 699, 1040
NmuCI	GTSAC	1 cut(s)	1312
NsiI	ATGCAT	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	1046
PceI	AGGCCT	1 cut(s)	8
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	8 cut(s)	157, 269, 481, 605, 692, 701, 1111, 1427
PkrI	GCNGC	4 cut(s)	211, 265, 574, 1195
PleI	GAGTC	2 cut(s)	421, 935
PpsI	GAGTC	2 cut(s)	421, 935
Ppu21I	YACGTR	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	1312
PspGI	CCWGG	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	1051
PspXI	VCTCGAGB	1 cut(s)	1046
PstI	CTGCAG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	16, 1256, 1302
RsaNI	GTAC	3 cut(s)	15, 1255, 1301
RseI	CAYNNNNRTG	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	447
SaqAI	TTAA	6 cut(s)	108, 513, 536, 657, 716, 1242
SatI	GCNGC	4 cut(s)	210, 264, 573, 1194
Sau3AI	GATC	5 cut(s)	248, 454, 591, 799, 1217
Sau96I	GGNCC	1 cut(s)	1051
ScaI	AGTACT	1 cut(s)	1302
SchI	GAGTC	2 cut(s)	421, 935
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	2 cut(s)	616, 1336
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	3 cut(s)	823, 850, 1089
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	1046
SlaI	CTCGAG	1 cut(s)	1046
SmiMI	CAYNNNNRTG	1 cut(s)	28
SmlI	CTYRAG	3 cut(s)	715, 1046, 1055
SmoI	CTYRAG	3 cut(s)	715, 1046, 1055
Sse9I	AATT	4 cut(s)	537, 730, 996, 1040
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	488, 894, 1071
SspMI	CTAG	8 cut(s)	161, 260, 576, 843, 902, 926, 1031, 1304
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	3 cut(s)	312, 448, 1047
TasI	AATT	4 cut(s)	537, 730, 996, 1040
TatI	WGTACW	1 cut(s)	1300
TfiI	GAWTC	8 cut(s)	157, 269, 481, 605, 692, 701, 1111, 1427
Tru1I	TTAA	6 cut(s)	108, 513, 536, 657, 716, 1242
Tru9I	TTAA	6 cut(s)	108, 513, 536, 657, 716, 1242
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	1312
TseI	GCWGC	4 cut(s)	209, 263, 572, 1193
Tsp45I	GTSAC	1 cut(s)	1312
TspDTI	ATGAA	9 cut(s)	50, 510, 664, 684, 1053, 1091, 1149, 1260, 1422
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	1 cut(s)	297
Vha464I	CTTAAG	1 cut(s)	715
XbaI	TCTAGA	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	1046
XmiI	GTMKAC	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	8 cut(s)	161, 260, 576, 843, 902, 926, 1031, 1304
ZrmI	AGTACT	1 cut(s)	1302
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.