Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Forward (+)

32850779 .. 32854947

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGAGAGAGGAGAAGTGAAAGTTGACAAATGGGGTTACGAAGTAAACACTTCCTCAGATGCTTGCATATCTGCCATTAACGCCTTCTATGTTCAGGTTTTGAGTTATGGGAGAGGCAGGTCTGTGATATTAGAAGCGCCGACACACGATAGCAACTGTGTGCTTGCTAATATTTTGGCTGCGCATTTTCTGTGCTCGTCTGATCCTTCCAAAGCTCATCCGTATCTCCAAGCGGCCAACTCTCGGCTCGAACAAGCTACCCCGTACGAGAAGGCAGTTTTCGATTCTGTCAATTATTTGATTTCCGGGGATAGAGATGATGATGTTGCCTTTGAGTTGCATTCTAAGCTCTTGAAATGTTTTCCTAAAGATCTGGTGTCTCTAAAAAGGGCCCAACTGTTGTGCTTCTACATGGCTCGAAATGATCTCTCACTGGATCTTGTTCAACAGGTTTTACCAAGTAATCAACAAGAAGAATATGTTTATGGTCTGCTTGCTTTCCCTTTACTGGAGCTTGGCCGGATGGCAGAAGCTGAGAAAGCAGCGAGAAAGGGATATGAAATCAACAAGCAAGACTGCTGGACACAACACAATTTGTGCCATGTTCTTCAGTACGAGTGTCGTTTTAAAGAAGCAGTAGAGTTCATGGAATCATGCTCGTCATCATGGGATTCTTGTCTGTCATTTATGCTCACACACAATTGGTGGCATGTAGCTCTGTGTTATATGGAAGGTTATTCTCCAATCGAAAGAATCTTAGAGGTATATGACCATCATATCTGGAAGGAGTTGGAAAAGGTTGATACTTTTGGACCAGAGGTGTACTTGAATGCCCTTGGGTTGTTTTTACGAGTTCATGTTCGTGGTCAAATGGATGCATTTGAAGACCGTTTGCAAACCTTAGCCAGACGCTTGACTGATAGGGCAAACTGGTATATAGATTGGCAACTTGACGTACTAGTTTTATGGGCGTTGGCTAATACTGGTGAGATTTCAGAGGCTGAAGAGTTGCTCAAGGGCTTGAAATCCAGATTTTCTAAGATGAACAAGAAGAAGCAACAATCCATGCAGAGTTCAATAATGCTTGCAGAAGCCATGTACGAGTATGGGAAGGGTAATGAAAAACATGCAATGGAATTGTTAGGTCCTAATTTTGATGCTGATAACTGTAAGACGATTGGAGCATCTGGTGAACAGGTTGATGTATTCAATGAAGTCTGGTATTGTATGTTGCTTAACAATGGACAAGCTACAAAAGCAACTGAGGTGATTGAGAAGCGGATCAAGGCAAGAGACGGGATCCCTTTCCTTTGGCGCCTCCTGGAGAGAGGTTATAAACAAACAGGCAGACCGGAGGTTGCAATTGCAAGCGAAAAGGCCAGGGGTCTAGAGACTGCATATTTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

470

Amino Acids

53.73

Weight (kDa)

5.51

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1335
Acc16I	TGCGCA	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	1314
AciI	CCGC	2 cut(s)	233, 1279
AclWI	GGATC	5 cut(s)	197, 444, 1289, 1294, 1307
AcoI	YGGCCR	2 cut(s)	234, 517
AcuI	CTGAAG	2 cut(s)	593, 1023
AcyI	GRCGYC	1 cut(s)	1315
AfaI	GTAC	5 cut(s)	266, 614, 824, 957, 1100
AfiI	CCNNNNNNNGG	2 cut(s)	243, 508
AgsI	TTSAA	7 cut(s)	355, 446, 829, 884, 1024, 1077, 1210
AhlI	ACTAGT	1 cut(s)	958
AjnI	CCWGG	2 cut(s)	1320, 1379
AluBI	AGCT	7 cut(s)	215, 257, 349, 514, 533, 716, 1250
AluI	AGCT	7 cut(s)	215, 257, 349, 514, 533, 716, 1250
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	3 cut(s)	384, 1287, 1385
AlwI	GGATC	5 cut(s)	197, 444, 1289, 1294, 1307
AlwNI	CAGNNNCTG	2 cut(s)	533, 1001
AoxI	GGCC	4 cut(s)	234, 390, 517, 1377
ApaI	GGGCCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	179, 542
AspLEI	GCGC	3 cut(s)	139, 184, 1317
AspS9I	GGNCC	4 cut(s)	390, 391, 812, 1145
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	3 cut(s)	998, 1202, 1279
AvaII	GGWCC	2 cut(s)	812, 1145
BaeGI	GKGCMC	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	1299
BanI	GGYRCC	1 cut(s)	1314
BanII	GRGCYC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	166, 554
BccI	CCATC	2 cut(s)	517, 780
BciT130I	CCWGG	2 cut(s)	1322, 1381
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	384, 1287, 1385
BcuI	ACTAGT	1 cut(s)	958
BfaI	CTAG	2 cut(s)	959, 1388
BfoI	RGCGCY	2 cut(s)	140, 1318
BfuAI	ACCTGC	1 cut(s)	108
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	3 cut(s)	180, 234, 543
BlsI	GCNGC	3 cut(s)	181, 235, 544
Bme1390I	CCNGG	3 cut(s)	307, 1322, 1381
Bme18I	GGWCC	2 cut(s)	812, 1145
BmgT120I	GGNCC	4 cut(s)	390, 391, 812, 1145
BmiI	GGNNCC	3 cut(s)	392, 1301, 1316
BmrFI	CCNGG	3 cut(s)	307, 1322, 1381
BmsI	GCATC	4 cut(s)	49, 865, 1147, 1193
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	2 cut(s)	530, 1343
Bpu10I	CCTNAGC	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	998
BpuMI	CCSGG	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	1315
BsaJI	CCNNGG	3 cut(s)	306, 835, 1380
BsaWI	WCCGGW	1 cut(s)	1351
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 508
Bse1I	ACTGG	4 cut(s)	438, 513, 935, 988
Bse3DI	GCAATG	1 cut(s)	1137
BseBI	CCWGG	2 cut(s)	1322, 1381
BseDI	CCNNGG	3 cut(s)	306, 835, 1380
BseGI	GGATG	3 cut(s)	217, 528, 880
BseLI	CCNNNNNNNGG	2 cut(s)	243, 508
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	3 cut(s)	69, 525, 1254
BseNI	ACTGG	4 cut(s)	438, 513, 935, 988
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	166, 554
BshFI	GGCC	4 cut(s)	236, 392, 519, 1379
BshNI	GGYRCC	1 cut(s)	1314
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	306, 520, 1352
BsiWI	CGTACG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	243, 508
BsmAI	GTCTC	3 cut(s)	384, 1287, 1385
BsmBI	CGTCTC	1 cut(s)	1287
BsmI	GAATGC	2 cut(s)	340, 835
BsnI	GGCC	4 cut(s)	236, 392, 519, 1379
Bsp120I	GGGCCC	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	197, 394
Bsp143I	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
BspACI	CCGC	2 cut(s)	233, 1279
BspANI	GGCC	4 cut(s)	236, 392, 519, 1379
BspCNI	CTCAG	3 cut(s)	68, 526, 1255
BspLI	GGNNCC	3 cut(s)	392, 1301, 1316
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	5 cut(s)	197, 444, 1289, 1294, 1307
BspT107I	GGYRCC	1 cut(s)	1314
BsrDI	GCAATG	1 cut(s)	1137
BsrI	ACTGG	4 cut(s)	438, 513, 935, 988
BssECI	CCNNGG	3 cut(s)	306, 835, 1380
BssMI	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
BssNI	GRCGYC	1 cut(s)	1315
BssT1I	CCWWGG	1 cut(s)	835
Bst2UI	CCWGG	2 cut(s)	1322, 1381
Bst4CI	ACNGT	4 cut(s)	158, 399, 890, 1169
Bst6I	CTCTTC	1 cut(s)	999
BstACI	GRCGYC	1 cut(s)	1315
BstC8I	GCNNGC	5 cut(s)	64, 165, 495, 1086, 1369
BstDEI	CTNAG	7 cut(s)	55, 345, 534, 757, 901, 1038, 1263
BstF5I	GGATG	3 cut(s)	217, 528, 880
BstH2I	RGCGCY	2 cut(s)	140, 1318
BstHHI	GCGC	3 cut(s)	139, 184, 1317
BstKTI	GATC	6 cut(s)	205, 373, 427, 439, 1284, 1302
BstMAI	GTCTC	3 cut(s)	384, 1287, 1385
BstMBI	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 346, 539, 1256
BstNI	CCWGG	2 cut(s)	1322, 1381
BstNSI	RCATGY	2 cut(s)	713, 1130
BstSCI	CCNGG	3 cut(s)	305, 1320, 1379
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	166, 554
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	3 cut(s)	370, 436, 1299
BstYI	RGATCY	3 cut(s)	370, 436, 1299
BsuRI	GGCC	4 cut(s)	236, 392, 519, 1379
BtsCI	GGATG	3 cut(s)	217, 528, 880
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	5 cut(s)	64, 165, 495, 1086, 1369
CaiI	CAGNNNCTG	2 cut(s)	533, 1001
CfoI	GCGC	3 cut(s)	139, 184, 1317
Cfr13I	GGNCC	4 cut(s)	390, 391, 812, 1145
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	5 cut(s)	265, 613, 823, 956, 1099
CviQI	GTAC	5 cut(s)	265, 613, 823, 956, 1099
DdeI	CTNAG	7 cut(s)	55, 345, 534, 757, 901, 1038, 1263
DinI	GGCGCC	1 cut(s)	1316
DpnI	GATC	6 cut(s)	204, 372, 426, 438, 1283, 1301
DpnII	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
DraI	TTTAAA	1 cut(s)	628
EaeI	YGGCCR	2 cut(s)	234, 517
Eam1104I	CTCTTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	999
Eco130I	CCWWGG	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	812, 1145
Eco57I	CTGAAG	2 cut(s)	593, 1023
EcoO109I	RGGNCCY	2 cut(s)	390, 1145
EcoRII	CCWGG	2 cut(s)	1320, 1379
EcoT14I	CCWWGG	1 cut(s)	835
EcoT22I	ATGCAT	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	1316
EheI	GGCGCC	1 cut(s)	1316
ErhI	CCWWGG	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	1287
Fnu4HI	GCNGC	3 cut(s)	180, 234, 543
FokI	GGATG	3 cut(s)	204, 535, 887
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	3 cut(s)	180, 234, 543
FspBI	CTAG	2 cut(s)	959, 1388
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	3 cut(s)	138, 183, 1316
GluI	GCNGC	3 cut(s)	180, 234, 543
GsuI	CTGGAG	2 cut(s)	530, 1343
HaeII	RGCGCY	2 cut(s)	140, 1318
HaeIII	GGCC	4 cut(s)	236, 392, 519, 1379
HapII	CCGG	3 cut(s)	306, 520, 1352
HgaI	GACGC	1 cut(s)	918
HhaI	GCGC	3 cut(s)	139, 184, 1317
Hin1I	GRCGYC	1 cut(s)	1315
Hin6I	GCGC	3 cut(s)	137, 182, 1315
HinP1I	GCGC	3 cut(s)	137, 182, 1315
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	284, 650, 671, 753
HpaII	CCGG	3 cut(s)	306, 520, 1352
HphI	GGTGA	3 cut(s)	998, 1202, 1279
Hpy166II	GTNNAC	4 cut(s)	25, 46, 823, 1193
Hpy188I	TCNGA	3 cut(s)	58, 202, 997
Hpy188III	TCNNGA	4 cut(s)	352, 781, 1029, 1388
Hpy8I	GTNNAC	4 cut(s)	25, 46, 823, 1193
HpyAV	CCTTC	6 cut(s)	94, 216, 265, 725, 778, 1105
HpyCH4III	ACNGT	4 cut(s)	158, 399, 890, 1169
HpyCH4IV	ACGT	1 cut(s)	954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 346, 539, 1256
HpyF3I	CTNAG	7 cut(s)	55, 345, 534, 757, 901, 1038, 1263
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	1315
HspAI	GCGC	3 cut(s)	137, 182, 1315
KasI	GGCGCC	1 cut(s)	1314
Kzo9I	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
LmnI	GCTCC	2 cut(s)	511, 1181
Lsp1109I	GCAGC	2 cut(s)	166, 554
LweI	GCATC	4 cut(s)	49, 865, 1147, 1193
MaeI	CTAG	2 cut(s)	959, 1388
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	6 cut(s)	204, 372, 426, 438, 1283, 1301
MboI	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
MboII	GAAGA	5 cut(s)	485, 599, 896, 1016, 1063
MfeI	CAATTG	2 cut(s)	700, 1362
MflI	RGATCY	3 cut(s)	370, 436, 1299
MhlI	GDGCHC	2 cut(s)	197, 394
MluCI	AATT	6 cut(s)	292, 592, 700, 1136, 1150, 1362
Mly113I	GGCGCC	1 cut(s)	1315
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	9 cut(s)	64, 107, 754, 811, 991, 1258, 1322, 1328, 1348
Mph1103I	ATGCAT	1 cut(s)	880
MseI	TTAA	4 cut(s)	78, 627, 1236, 1408
MslI	CAYNNNNRTG	1 cut(s)	861
MspI	CCGG	3 cut(s)	306, 520, 1352
MspR9I	CCNGG	3 cut(s)	307, 1322, 1381
MunI	CAATTG	2 cut(s)	700, 1362
Mva1269I	GAATGC	2 cut(s)	340, 835
MvaI	CCWGG	2 cut(s)	1322, 1381
MwoI	GCNNNNNNNGC	4 cut(s)	80, 346, 539, 1256
NarI	GGCGCC	1 cut(s)	1315
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
NlaIV	GGNNCC	3 cut(s)	392, 1301, 1316
NmeAIII	GCCGAG	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	880
NspI	RCATGY	2 cut(s)	713, 1130
PctI	GAATGC	2 cut(s)	340, 835
PfeI	GAWTC	4 cut(s)	284, 650, 671, 753
Pfl23II	CGTACG	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	1320
PkrI	GCNGC	3 cut(s)	181, 235, 544
PluTI	GGCGCC	1 cut(s)	1318
PpuMI	RGGWCCY	1 cut(s)	1145
PsiI	TTATAA	1 cut(s)	1335
Psp5II	RGGWCCY	1 cut(s)	1145
Psp6I	CCWGG	2 cut(s)	1320, 1379
PspGI	CCWGG	2 cut(s)	1320, 1379
PspLI	CGTACG	1 cut(s)	264
PspN4I	GGNNCC	3 cut(s)	392, 1301, 1316
PspOMI	GGGCCC	1 cut(s)	390
PspPI	GGNCC	4 cut(s)	390, 391, 812, 1145
PspPPI	RGGWCCY	1 cut(s)	1145
PstNI	CAGNNNCTG	2 cut(s)	533, 1001
PsuI	RGATCY	3 cut(s)	370, 436, 1299
RsaI	GTAC	5 cut(s)	266, 614, 824, 957, 1100
RsaNI	GTAC	5 cut(s)	265, 613, 823, 956, 1099
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	4 cut(s)	78, 627, 1236, 1408
SatI	GCNGC	3 cut(s)	180, 234, 543
Sau3AI	GATC	6 cut(s)	202, 370, 424, 436, 1281, 1299
Sau96I	GGNCC	4 cut(s)	390, 391, 812, 1145
ScrFI	CCNGG	3 cut(s)	307, 1322, 1381
SduI	GDGCHC	2 cut(s)	197, 394
SfaNI	GCATC	4 cut(s)	49, 865, 1147, 1193
SfoI	GGCGCC	1 cut(s)	1316
SinI	GGWCC	2 cut(s)	812, 1145
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
SpeI	ACTAGT	1 cut(s)	958
Sse9I	AATT	6 cut(s)	292, 592, 700, 1136, 1150, 1362
SsiI	CCGC	2 cut(s)	233, 1279
SspDI	GGCGCC	1 cut(s)	1314
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	2 cut(s)	959, 1388
StyD4I	CCNGG	3 cut(s)	305, 1320, 1379
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	4 cut(s)	158, 399, 890, 1169
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	4 cut(s)	249, 282, 418, 747
TasI	AATT	6 cut(s)	292, 592, 700, 1136, 1150, 1362
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	4 cut(s)	284, 650, 671, 753
Tru1I	TTAA	4 cut(s)	78, 627, 1236, 1408
Tru9I	TTAA	4 cut(s)	78, 627, 1236, 1408
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	2 cut(s)	179, 542
TspDTI	ATGAA	6 cut(s)	573, 634, 845, 1058, 1134, 1227
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	2 cut(s)	812, 1145
XbaI	TCTAGA	1 cut(s)	1387
XceI	RCATGY	2 cut(s)	713, 1130
XspI	CTAG	2 cut(s)	959, 1388
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.