Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Reverse (-)

57767941 .. 57768690

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009788

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCCGATGCAGTCTCTGTCAGCAACTGCTTTGAACACGTCAGGGTCTCCAGAGACACCACCGACGAGGAGGAGGAAGAAGATGACTACGAAGTAGGCGAAGGCGAGACCTGCTTCTGGCAGCTCAACTCCAAATCCTCAGAGGCGTGCATCTCTGCCATTAACGCCTTCTATGATCAGGTTTTGAGTTATGGGAGACGCATGTCCGTGATAATAGAAGCGCCAGCACACGATAACAACTCTGTTCTTGCTAATATTTTGGCCGCACATTTTCTCTGCTCATCTGATCCTTCTAAAGCTCCTTCACATCTTCATGCGCCCAAGTCTCGGCTCGAACAAGCTATCTCGTACGAGAATGCAGTTTTCAATGCTGTCAATTGTTTGATTTCCAAGGATAGGAATGATAAATTTGCCTTTGAGCTGCATTCTAAGGTGGACAAGTTGTTCTTGACTCGAATGAGTTTGATTCTGGTGTGGATAGTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

4.86

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	2 cut(s)	3, 261
AcsI	RAATTY	1 cut(s)	407
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	117, 327, 396
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	35, 367
AjiI	CACGTC	1 cut(s)	40
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	124, 299, 341, 421
AluI	AGCT	4 cut(s)	124, 299, 341, 421
Alw26I	GTCTC	6 cut(s)	19, 48, 52, 101, 190, 330
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	2 cut(s)	17, 27
AoxI	GGCC	2 cut(s)	3, 261
ApeKI	GCWGC	2 cut(s)	121, 421
ApoI	RAATTY	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	223, 319
BbvI	GCAGC	2 cut(s)	133, 408
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	6 cut(s)	19, 48, 52, 101, 190, 330
BfoI	RGCGCY	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	122, 264, 422
BlsI	GCNGC	3 cut(s)	123, 265, 423
BmgBI	CACGTC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	159
BoxI	GACNNNNGTC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	34
BsaI	GGTCTC	2 cut(s)	52, 101
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 327, 396
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	117, 327, 396
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	2 cut(s)	83, 86
BseXI	GCAGC	2 cut(s)	133, 408
BshFI	GGCC	2 cut(s)	5, 263
BsiWI	CGTACG	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	117, 327, 396
BsmAI	GTCTC	6 cut(s)	19, 48, 52, 101, 190, 330
BsmBI	CGTCTC	1 cut(s)	190
BsmI	GAATGC	2 cut(s)	361, 424
BsnI	GGCC	2 cut(s)	5, 263
Bso31I	GGTCTC	2 cut(s)	52, 101
Bsp143I	GATC	2 cut(s)	175, 286
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	5, 263
BspCNI	CTCAG	1 cut(s)	152
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	281
BspTNI	GGTCTC	2 cut(s)	52, 101
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	175, 286
BssT1I	CCWWGG	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	148, 225
BstDEI	CTNAG	2 cut(s)	139, 429
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	223, 319
BstKTI	GATC	2 cut(s)	178, 289
BstMAI	GTCTC	6 cut(s)	19, 48, 52, 101, 190, 330
BstMBI	GATC	2 cut(s)	175, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 164
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	133, 408
BsuRI	GGCC	2 cut(s)	5, 263
BtrI	CACGTC	1 cut(s)	40
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	148, 225
CaiI	CAGNNNCTG	2 cut(s)	17, 27
CfoI	GCGC	2 cut(s)	223, 319
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	202, 314
CviJI	RGCY	7 cut(s)	5, 124, 263, 299, 331, 341, 421
CviKI_1	RGCY	7 cut(s)	5, 124, 263, 299, 331, 341, 421
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	139, 429
DpnI	GATC	2 cut(s)	177, 288
DpnII	GATC	2 cut(s)	175, 286
EaeI	YGGCCR	2 cut(s)	3, 261
Eco130I	CCWWGG	1 cut(s)	390
Eco31I	GGTCTC	2 cut(s)	52, 101
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	2 cut(s)	205, 317
FaiI	YATR	4 cut(s)	174, 192, 203, 315
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	2 cut(s)	201, 313
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	122, 264, 422
Fsp4HI	GCNGC	3 cut(s)	122, 264, 422
GlaI	GCGC	2 cut(s)	222, 318
GluI	GCNGC	3 cut(s)	122, 264, 422
GsuI	CTGGAG	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	5, 263
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	2 cut(s)	223, 319
Hin1II	CATG	2 cut(s)	205, 317
Hin6I	GCGC	2 cut(s)	221, 317
HinP1I	GCGC	2 cut(s)	221, 317
HinfI	GANTC	2 cut(s)	451, 466
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	142, 286
Hpy188III	TCNNGA	2 cut(s)	51, 448
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	95, 178, 300, 312
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	11, 150, 359, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 164
HpyF3I	CTNAG	2 cut(s)	139, 429
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	205, 317
HspAI	GCGC	2 cut(s)	221, 317
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	175, 286
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	28, 64, 103, 124, 164, 237, 455
Lsp1109I	GCAGC	2 cut(s)	133, 408
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	39
MalI	GATC	2 cut(s)	177, 288
MboI	GATC	2 cut(s)	175, 286
MboII	GAAGA	3 cut(s)	89, 92, 302
MfeI	CAATTG	1 cut(s)	376
MluCI	AATT	2 cut(s)	376, 407
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	5 cut(s)	61, 64, 67, 136, 148
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	206, 312
MunI	CAATTG	1 cut(s)	376
Mva1269I	GAATGC	2 cut(s)	361, 424
MwoI	GCNNNNNNNGC	2 cut(s)	111, 164
NdeII	GATC	2 cut(s)	175, 286
NlaIII	CATG	2 cut(s)	205, 317
NmeAIII	GCCGAG	1 cut(s)	307
NspI	RCATGY	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	2 cut(s)	361, 424
PfeI	GAWTC	1 cut(s)	466
Pfl23II	CGTACG	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	123, 265, 423
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PshAI	GACNNNNGTC	1 cut(s)	202
PspLI	CGTACG	1 cut(s)	348
PstNI	CAGNNNCTG	2 cut(s)	17, 27
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	206, 312
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	122, 264, 422
Sau3AI	GATC	2 cut(s)	175, 286
SchI	GAGTC	1 cut(s)	445
SetI	ASST	8 cut(s)	42, 113, 126, 183, 301, 343, 423, 435
SfaNI	GCATC	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	206, 312
Sse9I	AATT	2 cut(s)	376, 407
SsiI	CCGC	1 cut(s)	264
SspI	AATATT	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	390
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	333, 454
TasI	AATT	2 cut(s)	376, 407
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	2 cut(s)	121, 421
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	196
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.