Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Reverse (-)

23242410 .. 23243847

Gene Structure 1438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAATCATGCTCATCATCATGGGATTCTTGTGTGTCATTTATGCTCACACACAATTGGTGGCATGTAGCTCTTTGTTATATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGTGTATGACCTCCAGTCAGGGGAGCTGACCATAGTAATCTTTAACCCTCTGACATTGATGATGGAGCTTCTTGGAATGGTGCCGCGGAAGTTGAGTTATGTGTTGAAAGCATGGGCTGATTCTGAAGGCATAAAGGTACTTGAGCATACTTGGGTTGGATCAACACAGCAAGAGTTGCTGCATTTGGTGGGGCTAGTAGTACATCCAAGAGGGGAAGAATTTTGTGCTCCTTATCTTGATAAGGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.12

Weight (kDa)

5.09

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	254, 256
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	309, 372
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	184
AluBI	AGCT	3 cut(s)	71, 196, 238
AluI	AGCT	3 cut(s)	71, 196, 238
Alw21I	GWGCWC	1 cut(s)	400
AlwI	GGATC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	2 cut(s)	135, 226
BfaI	CTAG	1 cut(s)	365
BisI	GCNGC	2 cut(s)	254, 350
BlsI	GCNGC	2 cut(s)	255, 351
Bme18I	GGWCC	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	252
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	2 cut(s)	81, 167
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	98, 170, 184
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseNI	ACTGG	3 cut(s)	98, 170, 184
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	329
BspACI	CCGC	2 cut(s)	254, 256
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	98, 170, 184
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	112
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	68
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	167
Cfr42I	CCGCGG	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	308, 371
CviAII	CATG	4 cut(s)	9, 21, 65, 282
CviJI	RGCY	5 cut(s)	71, 196, 238, 287, 364
CviKI_1	RGCY	5 cut(s)	71, 196, 238, 287, 364
CviQI	GTAC	2 cut(s)	308, 371
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DriI	GACNNNNNGTC	1 cut(s)	184
Eam1105I	GACNNNNNGTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	315
FaeI	CATG	4 cut(s)	12, 24, 68, 285
FatI	CATG	4 cut(s)	8, 20, 64, 281
Fnu4HI	GCNGC	2 cut(s)	254, 350
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	254, 350
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	254, 350
GsuI	CTGGAG	2 cut(s)	81, 167
Hin1II	CATG	4 cut(s)	12, 24, 68, 285
HinfI	GANTC	4 cut(s)	5, 26, 108, 290
Hpy188I	TCNGA	2 cut(s)	222, 295
Hpy188III	TCNNGA	2 cut(s)	136, 407
HpyAV	CCTTC	3 cut(s)	80, 133, 290
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	12, 24, 68, 285
KspI	CCGCGG	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	193, 235, 403
LpnPI	CCDG	5 cut(s)	111, 121, 174, 183, 197
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	365
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	55, 389
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	126, 307
MnlI	CCTC	3 cut(s)	191, 228, 374
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	4 cut(s)	12, 24, 68, 285
NlaIV	GGNNCC	1 cut(s)	252
NspI	RCATGY	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	5, 26, 290
PkrI	GCNGC	2 cut(s)	255, 351
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	2 cut(s)	309, 372
RsaNI	GTAC	2 cut(s)	308, 371
RseI	CAYNNNNRTG	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	254, 350
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	7 cut(s)	73, 91, 183, 198, 240, 309, 417
SfaNI	GCATC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	55, 389
SsiI	CCGC	2 cut(s)	254, 256
SspMI	CTAG	1 cut(s)	365
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	55, 389
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	5, 26, 290
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	1 cut(s)	349
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.