pycom13g07070

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004639
Physical Location & Seq
Reverse (-)
4686578 .. 4690284
3707 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07070.3

Sequence Viewer

Length: 1407 bp
ATGGAGGGAGAGTTAAAAGTTGATAAATTTGGATACGAGGTGAGGACCTCTTCCGACGCCTGCATCTCCGCCATCAACGCCTTCTACGACCAGGTTTTAAACTATCGGCGGCGGCGGTCGGTGATATTGGAGGCGGCGGCGCACGACGACCAGTGCGTGCTTGCTAACATTCTGGCTGCTTACTTCCTCTCATCTGATCCTTCCCGAGCTCCTTCTCATCTCCAAGCCGCCAAGTCCCGGCTGGAACAAGCTACCCCGTACGAGAAAGCAGTGTTTGATGCTGTCAATTGTTTGATTTCTAAGGATAGAGACGATGATGTTGCTTTCGAGTTGCATTCAAAGCTCCTGAAAAGTTTTCCTAGAGATTTGGCTTCTCTGCAAAGGGCCCAAGTGCTCTGCTTCCACATGGCTCGACCTGACCTTTCGTTGGATCTTGTTCAACAGGTTCTACCCAGCAATGAACAAGAAGATTTTGTATATGGCATGCTTGCTTTTCCTTTATTGGAGCTTGGACGAATGGAAGAGGCTGAGAAAGCTGCGAAAAAGGGATATGAAATCAACAAGCGTGACTGCTGGGTGCAACATAATATGTGCCATGTTCTTCAGTATAATTGCCGCTTTAAAGAAGCAGTAGAGTTCATGGAAGAATGCTCACCTTCATGGGATTTGTGTTCGTCATTCATGTTCACACACAATTGGTGGCATGTAGCTCTTTGTTATTTAGAAGGTCATGCTCCAATCCAAAGAATCCGAGATTTATATGACCATTTTATCTGGAAGGAGTTGGAGAGACCTGATGCTCCACGTCCAGAGGTCCACTTGAATGCCCTTGGGTTGTTGTTACGGGTGCATGTTCGGGGTGAAATGGATGCCTTTAAGGACCATTTGAAGACCTTAGCCAATTGTGTGACAGATCAAGCCAACTGGTATTTAGATTGGCAGTTTGACATATTAGTTTTATGGGCGTTGGCTTATACTGGTGAAATTTCAAGGGCAGAAGAATTGCTCAAGGGCTTGAAATCCAGAATTACTAAGATGAACGAAAAGAAGCAACAGTTCATGCAGAACGCAATACTGCTTGCAGAAGCCACGTACGAGTATGGGAAGGGTAACGAAAAACAAGCATTAGAATTGCTTGGTCACGACTTTGATGCAGATAACTACAAGATGATCGGAGCATCGGGTGAACAGATTGATATATTCAATGAGGTATGGTACTGTATGCTGCTTAACAATGGACAAGCTGCAAAAGCAATTGAAGTGCTTAAGAAGCGGATCAAATCAAGAGAGGGTATCCCTTTCCTTTGGCGCCTGCTGGAGAGAGGCTATAAACTGACAGGCAGGGATGAGGAGGCGGCAACTGCAAGCGAGGAGGCCAAGCGTTTGGAGAACGCATATTTCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

54.04

Weight (kDa)

5.56

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1308
AclWI GGATC 3 cut(s) 191, 438, 1283
AcsI RAATTY 2 cut(s) 26, 984
AcuI CTGAAG 1 cut(s) 587
AcyI GRCGYC 2 cut(s) 57, 1309
AfaI GTAC 3 cut(s) 260, 1094, 1217
AfiI CCNNNNNNNGG 2 cut(s) 237, 427
AflII CTTAAG 1 cut(s) 1265
AgsI TTSAA 8 cut(s) 339, 440, 823, 889, 990, 1018, 1204, 1259
AjiI CACGTC 1 cut(s) 806
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 7 cut(s) 209, 251, 343, 508, 536, 710, 1244
AluI AGCT 7 cut(s) 209, 251, 343, 508, 536, 710, 1244
Alw21I GWGCWC 2 cut(s) 211, 396
Alw26I GTCTC 2 cut(s) 303, 784
AlwI GGATC 3 cut(s) 191, 438, 1283
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 2 cut(s) 384, 1374
ApaI GGGCCC 1 cut(s) 388
ApeKI GCWGC 4 cut(s) 176, 536, 1225, 1244
ApoI RAATTY 2 cut(s) 26, 984
AspLEI GCGC 2 cut(s) 142, 1311
AspS9I GGNCC 5 cut(s) 45, 384, 385, 814, 880
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 6 cut(s) 52, 133, 645, 872, 992, 1196
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 3 cut(s) 45, 814, 880
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 1308
BanII GRGCYC 2 cut(s) 211, 388
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 2 cut(s) 211, 396
BbvI GCAGC 4 cut(s) 163, 523, 1212, 1231
BccI CCATC 1 cut(s) 80
BcgI CGANNNNNNTGC 4 cut(s) 302, 336, 1133, 1167
BciT130I CCWGG 1 cut(s) 92
BciVI GTATCC 2 cut(s) 26, 1304
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 303, 784
BfaI CTAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 1312
BfrI CTTAAG 1 cut(s) 1265
BfuI GTATCC 2 cut(s) 26, 1304
Bme1390I CCNGG 2 cut(s) 92, 238
Bme18I GGWCC 3 cut(s) 45, 814, 880
BmeT110I CYCGRG 1 cut(s) 204
BmgBI CACGTC 1 cut(s) 806
BmgT120I GGNCC 5 cut(s) 45, 384, 385, 814, 880
BmiI GGNNCC 2 cut(s) 386, 1310
BmrFI CCNGG 2 cut(s) 92, 238
BmsI GCATC 6 cut(s) 72, 268, 787, 859, 1141, 1187
BpiI GAAGAC 1 cut(s) 896
BpmI CTGGAG 1 cut(s) 1337
Bpu10I CCTNAGC 1 cut(s) 895
BpuEI CTTGAG 1 cut(s) 992
BpuMI CCSGG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 1092
BsaHI GRCGYC 2 cut(s) 57, 1309
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 829
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 427
Bse1I ACTGG 3 cut(s) 151, 929, 982
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 829
BseGI GGATG 2 cut(s) 874, 1351
BseLI CCNNNNNNNGG 2 cut(s) 237, 427
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 151, 929, 982
BseRI GAGGAG 2 cut(s) 1364, 1385
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 4 cut(s) 163, 523, 1212, 1231
BseYI CCCAGC 2 cut(s) 452, 573
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 386, 1376
BshNI GGYRCC 1 cut(s) 1308
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 211, 396
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 238
BsiWI CGTACG 2 cut(s) 258, 1092
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 237, 427
BsmAI GTCTC 2 cut(s) 303, 784
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 3 cut(s) 334, 653, 829
BsnI GGCC 2 cut(s) 386, 1376
Bso31I GGTCTC 1 cut(s) 784
BsoBI CYCGRG 1 cut(s) 204
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 3 cut(s) 211, 388, 396
Bsp143I GATC 5 cut(s) 196, 430, 913, 1170, 1275
BspANI GGCC 2 cut(s) 386, 1376
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 386, 1310
BspPI GGATC 3 cut(s) 191, 438, 1283
BspT107I GGYRCC 1 cut(s) 1308
BspTI CTTAAG 1 cut(s) 1265
BspTNI GGTCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 463
BsrI ACTGG 3 cut(s) 151, 929, 982
BssECI CCNNGG 1 cut(s) 829
BssMI GATC 5 cut(s) 196, 430, 913, 1170, 1275
BssNI GRCGYC 2 cut(s) 57, 1309
BssT1I CCWWGG 1 cut(s) 829
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 1056, 1220
Bst6I CTCTTC 2 cut(s) 55, 516
BstACI GRCGYC 2 cut(s) 57, 1309
BstAFI CTTAAG 1 cut(s) 1265
BstBAI YACGTR 1 cut(s) 1092
BstC8I GCNNGC 8 cut(s) 61, 158, 162, 485, 489, 1080, 1313, 1366
BstDEI CTNAG 4 cut(s) 300, 528, 895, 1032
BstF5I GGATG 2 cut(s) 874, 1351
BstH2I RGCGCY 1 cut(s) 1312
BstHHI GCGC 2 cut(s) 142, 1311
BstKTI GATC 5 cut(s) 199, 433, 916, 1173, 1278
BstMAI GTCTC 2 cut(s) 303, 784
BstMBI GATC 5 cut(s) 196, 430, 913, 1170, 1275
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 6 cut(s) 77, 340, 533, 1250, 1270, 1361
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 3 cut(s) 487, 707, 854
BstSCI CCNGG 2 cut(s) 90, 236
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 163, 523, 1212, 1231
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 1384
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 2 cut(s) 26, 1304
BsuRI GGCC 2 cut(s) 386, 1376
BtrI CACGTC 1 cut(s) 806
BtsCI GGATG 2 cut(s) 874, 1351
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 158, 276
Cac8I GCNNGC 8 cut(s) 61, 158, 162, 485, 489, 1080, 1313, 1366
CfoI GCGC 2 cut(s) 142, 1311
Cfr13I GGNCC 5 cut(s) 45, 384, 385, 814, 880
CseI GACGC 1 cut(s) 65
CsiI ACCWGGT 1 cut(s) 90
Csp6I GTAC 3 cut(s) 259, 1093, 1216
CviQI GTAC 3 cut(s) 259, 1093, 1216
DdeI CTNAG 4 cut(s) 300, 528, 895, 1032
DinI GGCGCC 1 cut(s) 1310
DpnI GATC 5 cut(s) 198, 432, 915, 1172, 1277
DpnII GATC 5 cut(s) 196, 430, 913, 1170, 1275
DraI TTTAAA 2 cut(s) 99, 622
Eam1104I CTCTTC 2 cut(s) 55, 516
EarI CTCTTC 2 cut(s) 55, 516
EciI GGCGGA 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 829
Eco24I GRGCYC 2 cut(s) 211, 388
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 3 cut(s) 45, 814, 880
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 45, 384
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 829
EcoT38I GRGCYC 2 cut(s) 211, 388
EgeI GGCGCC 1 cut(s) 1310
EheI GGCGCC 1 cut(s) 1310
ErhI CCWWGG 1 cut(s) 829
Esp3I CGTCTC 1 cut(s) 303
FaqI GGGAC 1 cut(s) 220
FokI GGATG 2 cut(s) 881, 1358
FriOI GRGCYC 2 cut(s) 211, 388
FspBI CTAG 1 cut(s) 360
GlaI GCGC 2 cut(s) 141, 1310
GsaI CCCAGC 2 cut(s) 456, 577
GsuI CTGGAG 1 cut(s) 1337
HaeII RGCGCY 1 cut(s) 1312
HaeIII GGCC 2 cut(s) 386, 1376
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 65
HhaI GCGC 2 cut(s) 142, 1311
Hin1I GRCGYC 2 cut(s) 57, 1309
Hin6I GCGC 2 cut(s) 140, 1309
HinP1I GCGC 2 cut(s) 140, 1309
HinfI GANTC 1 cut(s) 747
HpaII CCGG 1 cut(s) 238
HphI GGTGA 6 cut(s) 52, 133, 645, 872, 992, 1196
Hpy166II GTNNAC 3 cut(s) 687, 817, 1187
Hpy188I TCNGA 4 cut(s) 55, 196, 752, 1175
Hpy188III TCNNGA 7 cut(s) 204, 346, 775, 809, 1023, 1142, 1284
Hpy8I GTNNAC 3 cut(s) 687, 817, 1187
Hpy99I CGWCG 2 cut(s) 59, 149
HpyAV CCTTC 7 cut(s) 91, 210, 222, 666, 719, 772, 1099
HpyCH4III ACNGT 2 cut(s) 1056, 1220
HpyCH4IV ACGT 2 cut(s) 805, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 340, 533, 1250, 1270, 1361
HpyF3I CTNAG 4 cut(s) 300, 528, 895, 1032
HpySE526I ACGT 2 cut(s) 805, 1091
Hsp92I GRCGYC 2 cut(s) 57, 1309
HspAI GCGC 2 cut(s) 140, 1309
KasI GGCGCC 1 cut(s) 1308
Kzo9I GATC 5 cut(s) 196, 430, 913, 1170, 1275
LmnI GCTCC 6 cut(s) 214, 348, 505, 739, 805, 1175
Lsp1109I GCAGC 4 cut(s) 163, 523, 1212, 1231
LweI GCATC 6 cut(s) 72, 268, 787, 859, 1141, 1187
MabI ACCWGGT 1 cut(s) 90
MaeI CTAG 1 cut(s) 360
MaeII ACGT 2 cut(s) 805, 1091
MaeIII GTNAC 5 cut(s) 566, 840, 907, 1109, 1139
MalI GATC 5 cut(s) 198, 432, 915, 1172, 1277
MboI GATC 5 cut(s) 196, 430, 913, 1170, 1275
MboII GAAGA 7 cut(s) 42, 479, 533, 593, 656, 901, 1010
MfeI CAATTG 4 cut(s) 286, 694, 901, 1254
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 3 cut(s) 211, 388, 396
Mly113I GGCGCC 1 cut(s) 1309
MmeI TCCRAC 3 cut(s) 78, 408, 765
MseI TTAA 6 cut(s) 14, 98, 621, 876, 1230, 1266
MslI CAYNNNNRTG 2 cut(s) 658, 822
MspCI CTTAAG 1 cut(s) 1265
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 2 cut(s) 92, 238
MunI CAATTG 4 cut(s) 286, 694, 901, 1254
Mva1269I GAATGC 3 cut(s) 334, 653, 829
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 6 cut(s) 77, 340, 533, 1250, 1270, 1361
NarI GGCGCC 1 cut(s) 1309
NciI CCSGG 1 cut(s) 238
NdeII GATC 5 cut(s) 196, 430, 913, 1170, 1275
NlaIV GGNNCC 2 cut(s) 386, 1310
NmuCI GTSAC 3 cut(s) 566, 907, 1139
NspI RCATGY 3 cut(s) 487, 707, 854
PaeI GCATGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 153
PctI GAATGC 3 cut(s) 334, 653, 829
PfeI GAWTC 1 cut(s) 747
Pfl23II CGTACG 2 cut(s) 258, 1092
PluTI GGCGCC 1 cut(s) 1312
Ppu21I YACGTR 1 cut(s) 1092
PpuMI RGGWCCY 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 2 cut(s) 452, 573
PspGI CCWGG 1 cut(s) 90
PspLI CGTACG 2 cut(s) 258, 1092
PspN4I GGNNCC 2 cut(s) 386, 1310
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 5 cut(s) 45, 384, 385, 814, 880
PspPPI RGGWCCY 1 cut(s) 45
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 3 cut(s) 260, 1094, 1217
RsaNI GTAC 3 cut(s) 259, 1093, 1216
RseI CAYNNNNRTG 2 cut(s) 658, 822
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 6 cut(s) 14, 98, 621, 876, 1230, 1266
Sau3AI GATC 5 cut(s) 196, 430, 913, 1170, 1275
Sau96I GGNCC 5 cut(s) 45, 384, 385, 814, 880
ScrFI CCNGG 2 cut(s) 92, 238
SduI GDGCHC 3 cut(s) 211, 388, 396
SexAI ACCWGGT 1 cut(s) 90
SfaNI GCATC 6 cut(s) 72, 268, 787, 859, 1141, 1187
SfoI GGCGCC 1 cut(s) 1310
SinI GGWCC 3 cut(s) 45, 814, 880
SmiMI CAYNNNNRTG 2 cut(s) 658, 822
SmlI CTYRAG 2 cut(s) 1007, 1265
SmoI CTYRAG 2 cut(s) 1007, 1265
SphI GCATGC 1 cut(s) 487
SspDI GGCGCC 1 cut(s) 1308
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 90, 236
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 2 cut(s) 1056, 1220
TaiI ACGT 2 cut(s) 808, 1094
TaqI TCGA 2 cut(s) 327, 412
TauI GCSGC 7 cut(s) 112, 115, 137, 140, 230, 618, 1358
TfiI GAWTC 1 cut(s) 747
Tru1I TTAA 6 cut(s) 14, 98, 621, 876, 1230, 1266
Tru9I TTAA 6 cut(s) 14, 98, 621, 876, 1230, 1266
TscAI CASTG 2 cut(s) 158, 276
TseFI GTSAC 3 cut(s) 566, 907, 1139
TseI GCWGC 4 cut(s) 176, 536, 1225, 1244
Tsp45I GTSAC 3 cut(s) 566, 907, 1139
TspDTI ATGAA 7 cut(s) 474, 567, 628, 648, 670, 1048, 1052
TspRI CASTG 2 cut(s) 158, 276
Vha464I CTTAAG 1 cut(s) 1265
VpaK11BI GGWCC 3 cut(s) 45, 814, 880
XapI RAATTY 2 cut(s) 26, 984
XceI RCATGY 3 cut(s) 487, 707, 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.