Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031087.1

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3291

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031087.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1223 bp

atggagagaggagttgtgaaagttgacaaatggggttacgaagtgaatacatcttcagatgcttgcatatctgccattaacgccttctatgatcaggttttgagttatgggagacgcaggtctgtgatattagaagctccggcacacgatcacaactgtgttcttgctaatattttagctgcacattttctgtgctcatctgatccttctaaagctccttcacatcttcaagcggccaagtctcgtctcgaccaagctacctcgtatgagaaggcagttttcgatgctgtcaattgtttgatttccaaggatagggatgatgatgttgcctttgagctgcattctaagctcttaaaaagttttcctaaagatctggcgtctctgaaaagggcccaagtgctctgcttctacatggctcgacctgatctgtcattggatcttgttcaacaggttctgcctagtaatcaacaagaagaatacatttatggtatgcttgctttccctttactagagcttggccgaatggcagatgctgagaaggcagcaagaaagggatatgaaatcaacaagcaagactgctggacacatcataatttgtgccatgttcttcagtatgagtgtcgttttaaagaagcagtagagttcatggaatcatgctcgtcatcatgggattcttgtgtgtcatttatgctcacacacaattggtggcatgttgctctttgttatatggaaggtcattctccagtcgaaagactcttagagatatatgaccatcatatctggaaggagttggaaaaagttgatgcttttggaccagaggtgtacttaaatgcccttgggttgtttttacgggtgcatgttcgtggtcaaatggatgcgtttggggaccgtttgaagatcttagccaaacgcctgactgatagggccaactggtatatagagtggcattttgacgtcctagttttatgggccttggctaatactggtgagatttcagaggctgaagagttgctcaagggcttgaagtccagaatttctgagatgaacaagaagaagcaacaatccatgcagagcgcaataatgcttgcagaagccttgtacgagtatgggaggggtaacgacaaacatgcaatagaattgcttggtcctaattttgatgctgataactgtaagacgattggagcatcgggtgaacagcttgatgtattcaatgaagtctggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

46.5

Weight (kDa)

5.6

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	957
Acc36I	ACCTGC	1 cut(s)	108
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	2 cut(s)	197, 444
AcoI	YGGCCR	2 cut(s)	234, 517
AcsI	RAATTY	1 cut(s)	1032
AcuI	CTGAAG	3 cut(s)	39, 593, 1023
AcyI	GRCGYC	2 cut(s)	377, 954
AfaI	GTAC	2 cut(s)	824, 1100
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	5 cut(s)	230, 446, 895, 1024, 1210
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	8 cut(s)	137, 179, 215, 257, 337, 349, 514, 1198
AluI	AGCT	8 cut(s)	137, 179, 215, 257, 337, 349, 514, 1198
Alw21I	GWGCWC	2 cut(s)	197, 402
Alw26I	GTCTC	4 cut(s)	106, 246, 251, 384
AlwI	GGATC	2 cut(s)	197, 444
AlwNI	CAGNNNCTG	3 cut(s)	454, 533, 1001
AoxI	GGCC	5 cut(s)	234, 390, 517, 924, 969
ApaI	GGGCCC	1 cut(s)	394
ApeKI	GCWGC	3 cut(s)	179, 337, 542
ApoI	RAATTY	1 cut(s)	1032
AspLEI	GCGC	1 cut(s)	1076
AspS9I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
AsuHPI	GGTGA	2 cut(s)	998, 1202
AvaII	GGWCC	3 cut(s)	812, 886, 1145
BaeGI	GKGCMC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	197, 402
BbvI	GCAGC	3 cut(s)	166, 324, 554
BccI	CCATC	1 cut(s)	780
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	4 cut(s)	106, 246, 251, 384
BfaI	CTAG	3 cut(s)	459, 509, 959
BfuAI	ACCTGC	1 cut(s)	108
BglII	AGATCT	2 cut(s)	370, 897
BisI	GCNGC	4 cut(s)	180, 234, 338, 543
BlsI	GCNGC	4 cut(s)	181, 235, 339, 544
Bme18I	GGWCC	3 cut(s)	812, 886, 1145
BmgT120I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
BmiI	GGNNCC	2 cut(s)	392, 887
BmsI	GCATC	7 cut(s)	49, 274, 520, 793, 865, 1147, 1193
BoxI	GACNNNNGTC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	998
BsaHI	GRCGYC	2 cut(s)	377, 954
BsaJI	CCNNGG	3 cut(s)	306, 835, 972
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	743, 935, 988
BseDI	CCNNGG	3 cut(s)	306, 835, 972
BseGI	GGATG	2 cut(s)	322, 880
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	525, 1029
BseNI	ACTGG	3 cut(s)	743, 935, 988
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	3 cut(s)	166, 324, 554
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	236, 392, 519, 926, 971
BsiHKAI	GWGCWC	2 cut(s)	197, 402
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	4 cut(s)	106, 246, 251, 384
BsmBI	CGTCTC	3 cut(s)	106, 251, 384
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	5 cut(s)	236, 392, 519, 926, 971
Bsp120I	GGGCCC	1 cut(s)	390
Bsp1286I	GDGCHC	3 cut(s)	197, 394, 402
Bsp143I	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	5 cut(s)	236, 392, 519, 926, 971
BspCNI	CTCAG	2 cut(s)	526, 1030
BspLI	GGNNCC	2 cut(s)	392, 887
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	197, 444
BsrI	ACTGG	3 cut(s)	743, 935, 988
BssECI	CCNNGG	3 cut(s)	306, 835, 972
BssMI	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
BssNI	GRCGYC	2 cut(s)	377, 954
BssT1I	CCWWGG	3 cut(s)	306, 835, 972
Bst4CI	ACNGT	3 cut(s)	158, 890, 1169
Bst6I	CTCTTC	1 cut(s)	999
BstACI	GRCGYC	2 cut(s)	377, 954
BstC8I	GCNNGC	3 cut(s)	64, 495, 1086
BstDEI	CTNAG	5 cut(s)	345, 534, 757, 901, 1038
BstF5I	GGATG	2 cut(s)	322, 880
BstHHI	GCGC	1 cut(s)	1076
BstKTI	GATC	7 cut(s)	94, 151, 205, 373, 427, 439, 900
BstMAI	GTCTC	4 cut(s)	106, 246, 251, 384
BstMBI	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 346, 539
BstNSI	RCATGY	3 cut(s)	713, 860, 1130
BstPAI	GACNNNNGTC	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	3 cut(s)	166, 324, 554
BstX2I	RGATCY	3 cut(s)	370, 436, 897
BstYI	RGATCY	3 cut(s)	370, 436, 897
BsuRI	GGCC	5 cut(s)	236, 392, 519, 926, 971
BtsCI	GGATG	2 cut(s)	322, 880
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	64, 495, 1086
CaiI	CAGNNNCTG	3 cut(s)	454, 533, 1001
CfoI	GCGC	1 cut(s)	1076
Cfr13I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
CseI	GACGC	2 cut(s)	123, 366
Csp6I	GTAC	2 cut(s)	823, 1099
CviAII	CATG	9 cut(s)	412, 602, 646, 654, 666, 710, 857, 1066, 1127
CviQI	GTAC	2 cut(s)	823, 1099
DdeI	CTNAG	5 cut(s)	345, 534, 757, 901, 1038
DpnI	GATC	7 cut(s)	93, 150, 204, 372, 426, 438, 899
DpnII	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
DraI	TTTAAA	1 cut(s)	628
EaeI	YGGCCR	2 cut(s)	234, 517
Eam1104I	CTCTTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	999
Eco130I	CCWWGG	3 cut(s)	306, 835, 972
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	3 cut(s)	812, 886, 1145
Eco57I	CTGAAG	3 cut(s)	39, 593, 1023
EcoO109I	RGGNCCY	1 cut(s)	390
EcoT14I	CCWWGG	3 cut(s)	306, 835, 972
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	3 cut(s)	306, 835, 972
Esp3I	CGTCTC	3 cut(s)	106, 251, 384
FaeI	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	9 cut(s)	411, 601, 645, 653, 665, 709, 856, 1065, 1126
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	180, 234, 338, 543
FokI	GGATG	2 cut(s)	329, 887
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	4 cut(s)	180, 234, 338, 543
FspBI	CTAG	3 cut(s)	459, 509, 959
GlaI	GCGC	1 cut(s)	1075
GluI	GCNGC	4 cut(s)	180, 234, 338, 543
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	5 cut(s)	236, 392, 519, 926, 971
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	2 cut(s)	123, 366
HhaI	GCGC	1 cut(s)	1076
Hin1I	GRCGYC	2 cut(s)	377, 954
Hin1II	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
Hin6I	GCGC	1 cut(s)	1074
HinP1I	GCGC	1 cut(s)	1074
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	650, 671, 753
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	998, 1202
Hpy166II	GTNNAC	3 cut(s)	25, 823, 1193
Hpy188I	TCNGA	5 cut(s)	58, 202, 384, 997, 1039
Hpy188III	TCNNGA	3 cut(s)	248, 781, 1029
Hpy8I	GTNNAC	3 cut(s)	25, 823, 1193
HpyAV	CCTTC	7 cut(s)	94, 216, 228, 265, 532, 725, 778
HpyCH4III	ACNGT	3 cut(s)	158, 890, 1169
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	7 cut(s)	66, 182, 340, 856, 1069, 1088, 1130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 346, 539
HpyF3I	CTNAG	5 cut(s)	345, 534, 757, 901, 1038
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	2 cut(s)	377, 954
Hsp92II	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
HspAI	GCGC	1 cut(s)	1074
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
LmnI	GCTCC	3 cut(s)	142, 220, 1181
Lsp1109I	GCAGC	3 cut(s)	166, 324, 554
LweI	GCATC	7 cut(s)	49, 274, 520, 793, 865, 1147, 1193
MaeI	CTAG	3 cut(s)	459, 509, 959
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	2 cut(s)	35, 1115
MalI	GATC	7 cut(s)	93, 150, 204, 372, 426, 438, 899
MboI	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
MboII	GAAGA	7 cut(s)	45, 218, 485, 599, 907, 1016, 1063
MfeI	CAATTG	2 cut(s)	292, 700
MflI	RGATCY	3 cut(s)	370, 436, 897
MhlI	GDGCHC	3 cut(s)	197, 394, 402
MluCI	AATT	6 cut(s)	292, 592, 700, 1032, 1136, 1150
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	4 cut(s)	271, 811, 991, 1104
MseI	TTAA	4 cut(s)	78, 353, 627, 827
MslI	CAYNNNNRTG	2 cut(s)	156, 861
MspI	CCGG	1 cut(s)	140
MunI	CAATTG	2 cut(s)	292, 700
Mva1269I	GAATGC	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	80, 346, 539
NdeII	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
NlaIII	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
NlaIV	GGNNCC	2 cut(s)	392, 887
NspI	RCATGY	3 cut(s)	713, 860, 1130
OliI	CACNNNNGTG	1 cut(s)	156
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	650, 671
PkrI	GCNGC	4 cut(s)	181, 235, 339, 544
PleI	GAGTC	1 cut(s)	747
PpsI	GAGTC	1 cut(s)	747
PshAI	GACNNNNGTC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	392, 887
PspOMI	GGGCCC	1 cut(s)	390
PspPI	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
PstNI	CAGNNNCTG	3 cut(s)	454, 533, 1001
PsuI	RGATCY	3 cut(s)	370, 436, 897
RsaI	GTAC	2 cut(s)	824, 1100
RsaNI	GTAC	2 cut(s)	823, 1099
RseI	CAYNNNNRTG	2 cut(s)	156, 861
SaqAI	TTAA	4 cut(s)	78, 353, 627, 827
SatI	GCNGC	4 cut(s)	180, 234, 338, 543
Sau3AI	GATC	7 cut(s)	91, 148, 202, 370, 424, 436, 897
Sau96I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
SchI	GAGTC	1 cut(s)	747
SduI	GDGCHC	3 cut(s)	197, 394, 402
SfaNI	GCATC	7 cut(s)	49, 274, 520, 793, 865, 1147, 1193
SinI	GGWCC	3 cut(s)	812, 886, 1145
SmiMI	CAYNNNNRTG	2 cut(s)	156, 861
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	6 cut(s)	292, 592, 700, 1032, 1136, 1150
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	3 cut(s)	459, 509, 959
StyI	CCWWGG	3 cut(s)	306, 835, 972
TaaI	ACNGT	3 cut(s)	158, 890, 1169
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	4 cut(s)	249, 282, 418, 747
TasI	AATT	6 cut(s)	292, 592, 700, 1032, 1136, 1150
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	650, 671
Tru1I	TTAA	4 cut(s)	78, 353, 627, 827
Tru9I	TTAA	4 cut(s)	78, 353, 627, 827
TseI	GCWGC	3 cut(s)	179, 337, 542
TspDTI	ATGAA	3 cut(s)	573, 634, 1058
VpaK11BI	GGWCC	3 cut(s)	812, 886, 1145
XapI	RAATTY	1 cut(s)	1032
XceI	RCATGY	3 cut(s)	713, 860, 1130
XspI	CTAG	3 cut(s)	459, 509, 959
ZraI	GACGTC	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.