Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Forward (+)

27986520 .. 27990946

Gene Structure 4427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTCCTGTACAACTTCATGAGAGGTTTCAAGTGTGAGTGTGCTGCTGCTGCTGCTGCATGTGAGAGTATTACTAGGTCCTTAGTTATAGAGGAACCTGGAGACCATGGAGAAGCACACTTAGTAGCTCTGGTGGAGATATGTAGGATGCTATTGATAGCGTATCAAAGGCTTCTCAAAAGATGGAGTGAGTCACAGTTCTACCAAGTCTTGAATGTATTATTGGATCAGATTATTGAGCTTTTAACAAAATCTTCCAAGCTGATGCTAAAGAGTGTTACAACTATCAGGCTCACACACAATTGGTGGCATGTAGCTCTTTGTTATATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGAGATGGATTGGGCTTTCTACTCGTTTCTGATTAAGAAAGTGCTTCATTTGCATCTCTATGCAATAATATTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

19.21

Weight (kDa)

6.29

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	31, 214
AjnI	CCWGG	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	128, 241, 262, 317
AluI	AGCT	4 cut(s)	128, 241, 262, 317
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	234
ApeKI	GCWGC	5 cut(s)	44, 47, 50, 53, 56
AspS9I	GGNCC	2 cut(s)	78, 413
AvaII	GGWCC	2 cut(s)	78, 413
BbvI	GCAGC	5 cut(s)	31, 34, 37, 40, 43
BccI	CCATC	3 cut(s)	177, 381, 415
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	5 cut(s)	45, 48, 51, 54, 57
BlsI	GCNGC	5 cut(s)	46, 49, 52, 55, 58
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	2 cut(s)	78, 413
BmgT120I	GGNCC	2 cut(s)	78, 413
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	4 cut(s)	138, 255, 394, 478
BpmI	CTGGAG	2 cut(s)	120, 327
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	5 cut(s)	31, 34, 37, 40, 43
BsmAI	GTCTC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	82, 121, 358
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 53, 56, 466
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	63, 314
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	5 cut(s)	31, 34, 37, 40, 43
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	153
CciI	TCATGA	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	78, 413
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	19, 60, 107, 311
CviJI	RGCY	7 cut(s)	128, 172, 241, 262, 292, 317, 431
CviKI_1	RGCY	7 cut(s)	128, 172, 241, 262, 292, 317, 431
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	82, 121, 358
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	78, 413
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	4 cut(s)	22, 63, 110, 314
FatI	CATG	4 cut(s)	18, 59, 106, 310
Fnu4HI	GCNGC	5 cut(s)	45, 48, 51, 54, 57
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	45, 48, 51, 54, 57
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	5 cut(s)	45, 48, 51, 54, 57
GsuI	CTGGAG	2 cut(s)	120, 327
Hin1II	CATG	4 cut(s)	22, 63, 110, 314
HinfI	GANTC	2 cut(s)	191, 354
Hpy188I	TCNGA	2 cut(s)	231, 447
Hpy188III	TCNNGA	3 cut(s)	19, 211, 382
HpyAV	CCTTC	2 cut(s)	326, 379
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	59, 469, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 53, 56, 466
HpyF3I	CTNAG	3 cut(s)	82, 121, 358
Hsp92II	CATG	4 cut(s)	22, 63, 110, 314
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	8 cut(s)	20, 84, 111, 116, 274, 357, 367, 429
Lsp1109I	GCAGC	5 cut(s)	31, 34, 37, 40, 43
LweI	GCATC	4 cut(s)	138, 255, 394, 478
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	192, 277
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	246
MfeI	CAATTG	1 cut(s)	301
MluCI	AATT	1 cut(s)	301
MlyI	GAGTC	2 cut(s)	200, 348
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	2 cut(s)	17, 85
MseI	TTAA	2 cut(s)	245, 450
MslI	CAYNNNNRTG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	50, 53, 56, 466
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	4 cut(s)	22, 63, 110, 314
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	192
NspI	RCATGY	2 cut(s)	63, 314
PagI	TCATGA	1 cut(s)	18
PkrI	GCNGC	5 cut(s)	46, 49, 52, 55, 58
PleI	GAGTC	2 cut(s)	199, 348
PpsI	GAGTC	2 cut(s)	199, 348
PpuMI	RGGWCCY	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	78, 413
PspPPI	RGGWCCY	1 cut(s)	78
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	245, 450
SatI	GCNGC	5 cut(s)	45, 48, 51, 54, 57
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	2 cut(s)	78, 413
SchI	GAGTC	2 cut(s)	200, 348
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	8 cut(s)	28, 80, 100, 130, 243, 264, 319, 337
SfaNI	GCATC	4 cut(s)	138, 255, 394, 478
SinI	GGWCC	2 cut(s)	78, 413
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	1 cut(s)	301
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	348
TasI	AATT	1 cut(s)	301
TatI	WGTACW	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	245, 450
Tru9I	TTAA	2 cut(s)	245, 450
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	5 cut(s)	44, 47, 50, 53, 56
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	7, 452
VpaK11BI	GGWCC	2 cut(s)	78, 413
XceI	RCATGY	2 cut(s)	63, 314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.