Rroxscaffold_5G00385730

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004639
Physical Location & Seq
Forward (+)
64751627 .. 64755752
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385730.1

Sequence Viewer

Length: 1410 bp
ATGGAGAGAGGAGTTGTGAAAGTTGACAAATGGGGTTACGAAGTGAATACCTCTTCAGATGCTTGCATATCTGCCATTAACGCCTTCTATGATCAGGTTTTGAGTTATGGGAGACGCAGGTCTGTGATATTAGAAGCTCCGGCACACGATCACAACTGTGTTCTTGCTAATATTTTAGCTGCACATTTTCTGTGCTCATCTGATCCTTCTAAAGCTCCTTCACATCTTCAAGCGGCCAAGTCTCGGCTCGAACAAGCTACCTCGTATGAGAAGGCAGTTTTCGATGCTGTCAATTGTTTGATTTCCAAGGATAGGGATGATGATGTTGCCTTTGAGCTGCATTCTAAGCTCTTACAAAGTTTTCCTAAAGATCTGGCGTCTCTGAAAAGGGCCCAAGTGCTCTGCTTCTACATGGCTCGACCTGATATGTCATTGAATCTTGTTCAACAGGTTCTACCAAGTAATCAACAAGAAGAATACATTTATGGTATGCTTGCTTTCCCTTTACTGGAGCTTGGCCGAATGGCAGATGCTGAGAAAGCAGCAAGAAAGGGATATGAAATCAACAAGCAAGACTGCTGGACACATCATAATTTGTGCCATGTTCTTCAGTATGAGTGTCGTTTTAAAGAAGCAGTAGAGTTCATGGAATCATGCTCGTCATCATGGGATTCTTGTGTGTCATTTATGCTCACACACAATTGGTGGCATGTAGCTCTTTGCTATATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGAGGTGTACTTAAATGCCCTTGGGTTGTTTTTACGGTTGCATGTTCGTGGTCAAATGGATGCGTTTGAGGACCGTTTGAAGATCTTAGTCAAACGCATGACTGATAGGGCCAACTGGTATATAGAGTGGCATCTTGACGTCCTAGTTTTGTGGGCCTTGGCTAATACTGGTGAGATTTCAGAGGCTGAAGAGTTGCTCAAGGGCTTGAAGTGCAGAATTTCTAAGATGAACAAGAAGAAGCAACAATCCATGCAGAGTGCAATAATGCTTGCAGAAGCCTTGTACGAGTATGGGAGGGGTAACGACAAACATGCAATGGAATTGCTAGGTCCTAATTTTGATGCTGATAACTGTAAGACGATTGGAGCATCGGGTGAACAGCTTGATGTATTCAATGAAGTCTGGTACTGTTTGTTGCTTAACAATGGACAAGCTACGAAAGCAACTGAGGTGATTGAGAAGCGGATCAAAGCAAGAGACGGAATCCCTTTCCTTTGGCGCCTTCTGGAGAAAGGTTATAAACAAACAGGCAGACAGGAAGTTGCAATTGCAAGTGAGAAAGCCAAGGTTCTAGAGACTGCATATTTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

53.75

Weight (kDa)

6.04

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cohesin_load PF10345 303 - 385 9.4e-06 Cohesin loading factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1335
AatII GACGTC 1 cut(s) 957
Acc36I ACCTGC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 1314
AciI CCGC 2 cut(s) 233, 1279
AclWI GGATC 2 cut(s) 197, 1289
AcoI YGGCCR 2 cut(s) 234, 517
AcsI RAATTY 1 cut(s) 1032
AcuI CTGAAG 3 cut(s) 39, 593, 1023
AcyI GRCGYC 3 cut(s) 377, 954, 1315
AfaI GTAC 3 cut(s) 824, 1100, 1223
AfiI CCNNNNNNNGG 3 cut(s) 243, 312, 508
AgsI TTSAA 6 cut(s) 230, 436, 446, 895, 1024, 1210
AleI CACNNNNGTG 1 cut(s) 156
Alw21I GWGCWC 2 cut(s) 197, 402
Alw26I GTCTC 5 cut(s) 106, 246, 384, 1287, 1385
AlwI GGATC 2 cut(s) 197, 1289
AlwNI CAGNNNCTG 2 cut(s) 533, 1001
AoxI GGCC 5 cut(s) 234, 390, 517, 924, 969
ApaI GGGCCC 1 cut(s) 394
ApeKI GCWGC 3 cut(s) 179, 337, 542
ApoI RAATTY 1 cut(s) 1032
AspLEI GCGC 1 cut(s) 1317
AspS9I GGNCC 7 cut(s) 390, 391, 812, 886, 924, 969, 1145
AsuHPI GGTGA 3 cut(s) 998, 1202, 1279
AvaII GGWCC 3 cut(s) 812, 886, 1145
BaeGI GKGCMC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 1314
BanII GRGCYC 1 cut(s) 394
Bbv12I GWGCWC 2 cut(s) 197, 402
BbvI GCAGC 3 cut(s) 166, 324, 554
BccI CCATC 1 cut(s) 780
BcgI CGANNNNNNTGC 2 cut(s) 1109, 1143
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 5 cut(s) 106, 246, 384, 1287, 1385
BfaI CTAG 3 cut(s) 959, 1142, 1388
BfoI RGCGCY 1 cut(s) 1318
BfuAI ACCTGC 1 cut(s) 108
BglII AGATCT 2 cut(s) 370, 897
BisI GCNGC 4 cut(s) 180, 234, 338, 543
BlsI GCNGC 4 cut(s) 181, 235, 339, 544
Bme18I GGWCC 3 cut(s) 812, 886, 1145
BmgT120I GGNCC 7 cut(s) 390, 391, 812, 886, 924, 969, 1145
BmiI GGNNCC 2 cut(s) 392, 1316
BmsI GCATC 8 cut(s) 49, 274, 520, 793, 865, 955, 1147, 1193
BoxI GACNNNNGTC 1 cut(s) 118
BpmI CTGGAG 3 cut(s) 530, 726, 1343
BpuEI CTTGAG 1 cut(s) 998
BsaHI GRCGYC 3 cut(s) 377, 954, 1315
BsaJI CCNNGG 4 cut(s) 306, 835, 972, 1380
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 312, 508
Bse1I ACTGG 4 cut(s) 513, 743, 935, 988
Bse3DI GCAATG 1 cut(s) 1137
BseDI CCNNGG 4 cut(s) 306, 835, 972, 1380
BseGI GGATG 2 cut(s) 322, 880
BseLI CCNNNNNNNGG 3 cut(s) 243, 312, 508
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 2 cut(s) 525, 1254
BseNI ACTGG 4 cut(s) 513, 743, 935, 988
BseRI GAGGAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 3 cut(s) 166, 324, 554
BsgI GTGCAG 2 cut(s) 165, 1048
BshFI GGCC 5 cut(s) 236, 392, 519, 926, 971
BshNI GGYRCC 1 cut(s) 1314
BsiHKAI GWGCWC 2 cut(s) 197, 402
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 3 cut(s) 243, 312, 508
BsmAI GTCTC 5 cut(s) 106, 246, 384, 1287, 1385
BsmBI CGTCTC 3 cut(s) 106, 384, 1287
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 5 cut(s) 236, 392, 519, 926, 971
Bsp120I GGGCCC 1 cut(s) 390
Bsp1286I GDGCHC 3 cut(s) 197, 394, 402
Bsp143I GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
BspACI CCGC 2 cut(s) 233, 1279
BspANI GGCC 5 cut(s) 236, 392, 519, 926, 971
BspCNI CTCAG 2 cut(s) 526, 1255
BspLI GGNNCC 2 cut(s) 392, 1316
BspMI ACCTGC 1 cut(s) 108
BspPI GGATC 2 cut(s) 197, 1289
BspT107I GGYRCC 1 cut(s) 1314
BsrDI GCAATG 1 cut(s) 1137
BsrI ACTGG 4 cut(s) 513, 743, 935, 988
BssECI CCNNGG 4 cut(s) 306, 835, 972, 1380
BssMI GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
BssNI GRCGYC 3 cut(s) 377, 954, 1315
BssT1I CCWWGG 4 cut(s) 306, 835, 972, 1380
Bst4CI ACNGT 5 cut(s) 158, 852, 890, 1169, 1226
Bst6I CTCTTC 2 cut(s) 58, 999
BstACI GRCGYC 3 cut(s) 377, 954, 1315
BstC8I GCNNGC 3 cut(s) 64, 495, 1086
BstDEI CTNAG 6 cut(s) 345, 534, 757, 901, 1038, 1263
BstF5I GGATG 2 cut(s) 322, 880
BstH2I RGCGCY 1 cut(s) 1318
BstHHI GCGC 1 cut(s) 1317
BstKTI GATC 6 cut(s) 94, 151, 205, 373, 900, 1284
BstMAI GTCTC 5 cut(s) 106, 246, 384, 1287, 1385
BstMBI GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
BstMWI GCNNNNNNNGC 5 cut(s) 80, 346, 539, 1026, 1256
BstNSI RCATGY 3 cut(s) 713, 860, 1130
BstPAI GACNNNNGTC 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 394
BstV1I GCAGC 3 cut(s) 166, 324, 554
BstX2I RGATCY 2 cut(s) 370, 897
BstYI RGATCY 2 cut(s) 370, 897
BsuRI GGCC 5 cut(s) 236, 392, 519, 926, 971
BtsCI GGATG 2 cut(s) 322, 880
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 64, 495, 1086
CaiI CAGNNNCTG 2 cut(s) 533, 1001
CfoI GCGC 1 cut(s) 1317
Cfr13I GGNCC 7 cut(s) 390, 391, 812, 886, 924, 969, 1145
CseI GACGC 2 cut(s) 123, 366
Csp6I GTAC 3 cut(s) 823, 1099, 1222
CviQI GTAC 3 cut(s) 823, 1099, 1222
DdeI CTNAG 6 cut(s) 345, 534, 757, 901, 1038, 1263
DinI GGCGCC 1 cut(s) 1316
DpnI GATC 6 cut(s) 93, 150, 204, 372, 899, 1283
DpnII GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
DraI TTTAAA 1 cut(s) 628
EaeI YGGCCR 2 cut(s) 234, 517
Eam1104I CTCTTC 2 cut(s) 58, 999
EarI CTCTTC 2 cut(s) 58, 999
Eco130I CCWWGG 4 cut(s) 306, 835, 972, 1380
Eco24I GRGCYC 1 cut(s) 394
Eco47I GGWCC 3 cut(s) 812, 886, 1145
Eco57I CTGAAG 3 cut(s) 39, 593, 1023
EcoO109I RGGNCCY 2 cut(s) 390, 1145
EcoT14I CCWWGG 4 cut(s) 306, 835, 972, 1380
EcoT38I GRGCYC 1 cut(s) 394
EgeI GGCGCC 1 cut(s) 1316
EheI GGCGCC 1 cut(s) 1316
ErhI CCWWGG 4 cut(s) 306, 835, 972, 1380
Esp3I CGTCTC 3 cut(s) 106, 384, 1287
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 180, 234, 338, 543
FokI GGATG 2 cut(s) 329, 887
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 4 cut(s) 180, 234, 338, 543
FspBI CTAG 3 cut(s) 959, 1142, 1388
GlaI GCGC 1 cut(s) 1316
GluI GCNGC 4 cut(s) 180, 234, 338, 543
GsuI CTGGAG 3 cut(s) 530, 726, 1343
HaeII RGCGCY 1 cut(s) 1318
HaeIII GGCC 5 cut(s) 236, 392, 519, 926, 971
HapII CCGG 1 cut(s) 140
HgaI GACGC 2 cut(s) 123, 366
HhaI GCGC 1 cut(s) 1317
Hin1I GRCGYC 3 cut(s) 377, 954, 1315
Hin6I GCGC 1 cut(s) 1315
HinP1I GCGC 1 cut(s) 1315
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 5 cut(s) 436, 650, 671, 753, 1299
HpaII CCGG 1 cut(s) 140
HphI GGTGA 3 cut(s) 998, 1202, 1279
Hpy166II GTNNAC 3 cut(s) 25, 823, 1193
Hpy188I TCNGA 4 cut(s) 58, 202, 384, 997
Hpy188III TCNNGA 4 cut(s) 781, 950, 1322, 1388
Hpy8I GTNNAC 3 cut(s) 25, 823, 1193
HpyAV CCTTC 7 cut(s) 94, 216, 228, 265, 725, 778, 1328
HpyCH4III ACNGT 5 cut(s) 158, 852, 890, 1169, 1226
HpyCH4IV ACGT 1 cut(s) 954
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 346, 539, 1026, 1256
HpyF3I CTNAG 6 cut(s) 345, 534, 757, 901, 1038, 1263
HpySE526I ACGT 1 cut(s) 954
Hsp92I GRCGYC 3 cut(s) 377, 954, 1315
HspAI GCGC 1 cut(s) 1315
KasI GGCGCC 1 cut(s) 1314
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
LmnI GCTCC 4 cut(s) 142, 220, 511, 1181
Lsp1109I GCAGC 3 cut(s) 166, 324, 554
LweI GCATC 8 cut(s) 49, 274, 520, 793, 865, 955, 1147, 1193
MaeI CTAG 3 cut(s) 959, 1142, 1388
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 2 cut(s) 35, 1115
MalI GATC 6 cut(s) 93, 150, 204, 372, 899, 1283
MboI GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
MboII GAAGA 7 cut(s) 45, 218, 485, 599, 907, 1016, 1063
MfeI CAATTG 3 cut(s) 292, 700, 1362
MflI RGATCY 2 cut(s) 370, 897
MhlI GDGCHC 3 cut(s) 197, 394, 402
MluCI AATT 7 cut(s) 292, 592, 700, 1032, 1136, 1150, 1362
Mly113I GGCGCC 1 cut(s) 1315
MlyI GAGTC 1 cut(s) 747
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 7 cut(s) 61, 271, 811, 877, 991, 1104, 1258
MseI TTAA 5 cut(s) 78, 627, 827, 1236, 1408
MslI CAYNNNNRTG 2 cut(s) 156, 861
MspI CCGG 1 cut(s) 140
MunI CAATTG 3 cut(s) 292, 700, 1362
Mva1269I GAATGC 1 cut(s) 340
MwoI GCNNNNNNNGC 5 cut(s) 80, 346, 539, 1026, 1256
NarI GGCGCC 1 cut(s) 1315
NdeII GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
NlaIV GGNNCC 2 cut(s) 392, 1316
NmeAIII GCCGAG 1 cut(s) 223
NspI RCATGY 3 cut(s) 713, 860, 1130
OliI CACNNNNGTG 1 cut(s) 156
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 4 cut(s) 436, 650, 671, 1299
PkrI GCNGC 4 cut(s) 181, 235, 339, 544
PleI GAGTC 1 cut(s) 747
PluTI GGCGCC 1 cut(s) 1318
PpsI GAGTC 1 cut(s) 747
PpuMI RGGWCCY 1 cut(s) 1145
PshAI GACNNNNGTC 1 cut(s) 118
PsiI TTATAA 1 cut(s) 1335
Psp5II RGGWCCY 1 cut(s) 1145
PspN4I GGNNCC 2 cut(s) 392, 1316
PspOMI GGGCCC 1 cut(s) 390
PspPI GGNCC 7 cut(s) 390, 391, 812, 886, 924, 969, 1145
PspPPI RGGWCCY 1 cut(s) 1145
PstNI CAGNNNCTG 2 cut(s) 533, 1001
PsuI RGATCY 2 cut(s) 370, 897
RsaI GTAC 3 cut(s) 824, 1100, 1223
RsaNI GTAC 3 cut(s) 823, 1099, 1222
RseI CAYNNNNRTG 2 cut(s) 156, 861
SaqAI TTAA 5 cut(s) 78, 627, 827, 1236, 1408
SatI GCNGC 4 cut(s) 180, 234, 338, 543
Sau3AI GATC 6 cut(s) 91, 148, 202, 370, 897, 1281
Sau96I GGNCC 7 cut(s) 390, 391, 812, 886, 924, 969, 1145
SchI GAGTC 1 cut(s) 747
SduI GDGCHC 3 cut(s) 197, 394, 402
SfaNI GCATC 8 cut(s) 49, 274, 520, 793, 865, 955, 1147, 1193
SfoI GGCGCC 1 cut(s) 1316
SinI GGWCC 3 cut(s) 812, 886, 1145
SmiMI CAYNNNNRTG 2 cut(s) 156, 861
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
Sse9I AATT 7 cut(s) 292, 592, 700, 1032, 1136, 1150, 1362
SsiI CCGC 2 cut(s) 233, 1279
SspDI GGCGCC 1 cut(s) 1314
SspI AATATT 1 cut(s) 172
SspMI CTAG 3 cut(s) 959, 1142, 1388
StyI CCWWGG 4 cut(s) 306, 835, 972, 1380
TaaI ACNGT 5 cut(s) 158, 852, 890, 1169, 1226
TaiI ACGT 1 cut(s) 957
TaqI TCGA 4 cut(s) 249, 282, 418, 747
TasI AATT 7 cut(s) 292, 592, 700, 1032, 1136, 1150, 1362
TatI WGTACW 1 cut(s) 822
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 4 cut(s) 436, 650, 671, 1299
Tru1I TTAA 5 cut(s) 78, 627, 827, 1236, 1408
Tru9I TTAA 5 cut(s) 78, 627, 827, 1236, 1408
TseI GCWGC 3 cut(s) 179, 337, 542
TspDTI ATGAA 4 cut(s) 573, 634, 1058, 1227
TspGWI ACGGA 1 cut(s) 1311
VpaK11BI GGWCC 3 cut(s) 812, 886, 1145
XapI RAATTY 1 cut(s) 1032
XbaI TCTAGA 1 cut(s) 1387
XceI RCATGY 3 cut(s) 713, 860, 1130
XspI CTAG 3 cut(s) 959, 1142, 1388
ZraI GACGTC 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.