Rh2BG351600

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004639
Physical Location & Seq
Reverse (-)
47983768 .. 48010005
26238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG351600.1

Sequence Viewer

Length: 384 bp
ATGATGCTAAAGAGTGTTACAACTATCAGGCTCACACACAATTGGTGGCATGTAGCTCTTTATTTTATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCATTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGTCATTTAGTTCACGTTGGGGAGCCGCTGTTTGTGCACAGACAACGCAGAGCAAGAATCCTACGCTGTGGTTGACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

127

Amino Acids

14.7

Weight (kDa)

8.44

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHM7_cyt PF14703 23 - 125 3e-17 Cytosolic domain of 10TM putative phosphate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 180, 327
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 161
AluBI AGCT 2 cut(s) 56, 281
AluI AGCT 2 cut(s) 56, 281
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 336
ApaLI GTGCAC 1 cut(s) 336
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 152
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 340
BccI CCATC 2 cut(s) 120, 206
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmcAI AGTACT 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 325
BmsI GCATC 2 cut(s) 133, 184
BpmI CTGGAG 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 83, 290
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 83, 290
BseSI GKGCMC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 340
BspACI CCGC 2 cut(s) 180, 327
BspLI GGNNCC 1 cut(s) 325
BsrI ACTGG 2 cut(s) 83, 290
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 340
BtsCI GGATG 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 50
CviJI RGCY 4 cut(s) 31, 56, 281, 326
CviKI_1 RGCY 4 cut(s) 31, 56, 281, 326
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 152
FaeI CATG 1 cut(s) 53
FaiI YATR 5 cut(s) 51, 68, 106, 108, 117
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 66
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HinfI GANTC 4 cut(s) 93, 262, 272, 358
Hpy166II GTNNAC 3 cut(s) 314, 338, 375
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 3 cut(s) 314, 338, 375
HpyAV CCTTC 2 cut(s) 65, 118
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 53
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 6 cut(s) 13, 96, 106, 147, 168, 303
LweI GCATC 2 cut(s) 133, 184
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 16
MfeI CAATTG 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 40, 379
MlyI GAGTC 2 cut(s) 87, 266
MmeI TCCRAC 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 329
MunI CAATTG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 335
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 325
NspI RCATGY 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 262, 358
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 2 cut(s) 87, 266
PpsI GAGTC 2 cut(s) 87, 266
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 152
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 327
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 87, 266
SduI GDGCHC 1 cut(s) 340
SetI ASST 4 cut(s) 58, 76, 283, 319
SfaNI GCATC 2 cut(s) 133, 184
SinI GGWCC 1 cut(s) 152
Sse9I AATT 2 cut(s) 40, 379
SsiI CCGC 2 cut(s) 180, 327
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 87, 201
TasI AATT 2 cut(s) 40, 379
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 2 cut(s) 262, 358
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
VneI GTGCAC 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 152
XceI RCATGY 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.