Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Forward (+)

68227703 .. 68234403

Gene Structure 6701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG447500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGAGAGAGGAGTTGTGAAAGTTGACAAATGGGGTTACGAAGTGAATACCTCTTCAGATGCTTGCATATCTGCCATTAACGCCTTCTATGATCAGGTTTTGAGTTATGGGAGACGCAGGTCTGTGATATTAGAAGCTCCGGCACACGATCACAACTGTGTTCTTGCTAATATTTTAGCTGCGCATTTTCTGTGCTCATCTGATCCTTCTAAAGCTCCTTCACATCTTCAAGCGGCCAAGTCTCGGCTCGAACAAGCTACCTCGTATGAGAAGGCAGTTTTCGATGCTGTCAATTGTTTGATTTCCAAGGATAGGGATGATGATGTTGCCTTTGAGCTGCATTCTAAGCTCTTAAAAAGTTTTCCTAAAGATCTGGCGTCTCTGAAAAGGGCCCAAGTGCTCTGCTTCTACATGGCTCGACCTGATCTGTCATTGAATCTTGTTCAACAGGTTCTACCAAGTAATCAACAAGAAGAATACATTTATGGTATGCTTGCTTTCCCTTTACTGGAGCTTGGCCGAATGGCAGATGCTGAGAAAGCAGCAAGAAAGGGATATGAAATCAACAAGCAAGACTGCTGGACACATCATAATTTGTGCCATGTTCTTCAGTATGAGTGTCGTTTTAAAGAAGCAGTAGAGTTCATGGAATCATGCTCGTCATCATGGGATTCTTGTGTGTCATTTATGCTCACACACAATTGGTGGCATGTAGCTCTTTGTTATATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGTTTTTGGACCAGAGGTGTACTTAAATGCCCTTGGGTTGTTTTTACGGGTGCATGTTCGTGGTCAAATGGATGCGTTTGAGGACCGTTTGAAGATCCTAGCCAAACGCCTGACTGATAGGGCCAACTGGTATATAGAGTGGCATCTTGACGTCCTAGTTTTATGGGCCTTGGCTAATACTGGTGAGATTTCAGAGGCTGAAGAGTTGCTCAAGGGCTTGAAATCCAGAATTTCTAAGATGAACAAGAAGAAGCAACAATCCATGCAAAGTGCAATAATGCTTGCAGAAGCCTTGTACGAGTATGGGAGGGGTAACGACAAACATGCAATAGAATTGCTAGGTCCTAATTTTGATGCTGATAACTGTAAGACGATTGGAGCATCAGGTGAACAGCTTGATGTATTCAATGAAGTCTGGTACTGTATGCTGCTTAACAATGGACAAGCTACGAAAGCAATTGAGGTGATTGAGAAGCGGATCAAAGCAAGAGACGGAATCCCTTTCCTTTGGCGCCTTCTGGAGAAAGGTTATAAACAAACAGGCAGACAGGAAGTCGCAATTGCAAGTGAGAAAGCCAAGGTTCTAGAGACTGCATATTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

469

Amino Acids

53.7

Weight (kDa)

6.12

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1335
AatII	GACGTC	1 cut(s)	957
Acc16I	TGCGCA	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	1314
AciI	CCGC	2 cut(s)	233, 1279
AclWI	GGATC	3 cut(s)	197, 892, 1289
AcoI	YGGCCR	2 cut(s)	234, 517
AcsI	RAATTY	1 cut(s)	1032
AcuI	CTGAAG	3 cut(s)	39, 593, 1023
AcyI	GRCGYC	3 cut(s)	377, 954, 1315
AfaI	GTAC	3 cut(s)	824, 1100, 1223
AfiI	CCNNNNNNNGG	3 cut(s)	243, 312, 508
AgsI	TTSAA	6 cut(s)	230, 436, 446, 895, 1024, 1210
AhdI	GACNNNNNGTC	1 cut(s)	1355
AleI	CACNNNNGTG	1 cut(s)	156
Alw21I	GWGCWC	2 cut(s)	197, 402
Alw26I	GTCTC	5 cut(s)	106, 246, 384, 1287, 1385
AlwI	GGATC	3 cut(s)	197, 892, 1289
AlwNI	CAGNNNCTG	2 cut(s)	533, 1001
AoxI	GGCC	5 cut(s)	234, 390, 517, 924, 969
ApaI	GGGCCC	1 cut(s)	394
ApeKI	GCWGC	4 cut(s)	179, 337, 542, 1231
ApoI	RAATTY	1 cut(s)	1032
AspLEI	GCGC	2 cut(s)	184, 1317
AspS9I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
AsuHPI	GGTGA	3 cut(s)	998, 1202, 1279
AvaII	GGWCC	3 cut(s)	812, 886, 1145
BaeGI	GKGCMC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	1314
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	197, 402
BbvI	GCAGC	4 cut(s)	166, 324, 554, 1218
BccI	CCATC	1 cut(s)	780
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	5 cut(s)	106, 246, 384, 1287, 1385
BfaI	CTAG	4 cut(s)	902, 959, 1142, 1388
BfoI	RGCGCY	1 cut(s)	1318
BfuAI	ACCTGC	1 cut(s)	108
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	5 cut(s)	180, 234, 338, 543, 1232
BlsI	GCNGC	5 cut(s)	181, 235, 339, 544, 1233
Bme18I	GGWCC	3 cut(s)	812, 886, 1145
BmeRI	GACNNNNNGTC	1 cut(s)	1355
BmgT120I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
BmiI	GGNNCC	2 cut(s)	392, 1316
BmsI	GCATC	7 cut(s)	49, 274, 520, 865, 955, 1147, 1193
BoxI	GACNNNNGTC	1 cut(s)	118
BpmI	CTGGAG	3 cut(s)	530, 726, 1343
BpuEI	CTTGAG	1 cut(s)	998
BsaHI	GRCGYC	3 cut(s)	377, 954, 1315
BsaJI	CCNNGG	4 cut(s)	306, 835, 972, 1380
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 312, 508
Bse1I	ACTGG	4 cut(s)	513, 743, 935, 988
BseDI	CCNNGG	4 cut(s)	306, 835, 972, 1380
BseGI	GGATG	2 cut(s)	322, 880
BseLI	CCNNNNNNNGG	3 cut(s)	243, 312, 508
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	4 cut(s)	513, 743, 935, 988
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	4 cut(s)	166, 324, 554, 1218
BshFI	GGCC	5 cut(s)	236, 392, 519, 926, 971
BshNI	GGYRCC	1 cut(s)	1314
BsiHKAI	GWGCWC	2 cut(s)	197, 402
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	243, 312, 508
BsmAI	GTCTC	5 cut(s)	106, 246, 384, 1287, 1385
BsmBI	CGTCTC	3 cut(s)	106, 384, 1287
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	5 cut(s)	236, 392, 519, 926, 971
Bsp120I	GGGCCC	1 cut(s)	390
Bsp1286I	GDGCHC	3 cut(s)	197, 394, 402
Bsp143I	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
BspACI	CCGC	2 cut(s)	233, 1279
BspANI	GGCC	5 cut(s)	236, 392, 519, 926, 971
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	392, 1316
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	3 cut(s)	197, 892, 1289
BspT107I	GGYRCC	1 cut(s)	1314
BsrI	ACTGG	4 cut(s)	513, 743, 935, 988
BssECI	CCNNGG	4 cut(s)	306, 835, 972, 1380
BssMI	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
BssNI	GRCGYC	3 cut(s)	377, 954, 1315
BssT1I	CCWWGG	4 cut(s)	306, 835, 972, 1380
Bst4CI	ACNGT	4 cut(s)	158, 890, 1169, 1226
Bst6I	CTCTTC	2 cut(s)	58, 999
BstACI	GRCGYC	3 cut(s)	377, 954, 1315
BstC8I	GCNNGC	3 cut(s)	64, 495, 1086
BstDEI	CTNAG	4 cut(s)	345, 534, 757, 1038
BstF5I	GGATG	2 cut(s)	322, 880
BstH2I	RGCGCY	1 cut(s)	1318
BstHHI	GCGC	2 cut(s)	184, 1317
BstKTI	GATC	7 cut(s)	94, 151, 205, 373, 427, 900, 1284
BstMAI	GTCTC	5 cut(s)	106, 246, 384, 1287, 1385
BstMBI	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 346, 539, 1256
BstNSI	RCATGY	3 cut(s)	713, 860, 1130
BstPAI	GACNNNNGTC	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	4 cut(s)	166, 324, 554, 1218
BstX2I	RGATCY	2 cut(s)	370, 897
BstYI	RGATCY	2 cut(s)	370, 897
BsuRI	GGCC	5 cut(s)	236, 392, 519, 926, 971
BtsCI	GGATG	2 cut(s)	322, 880
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	64, 495, 1086
CaiI	CAGNNNCTG	2 cut(s)	533, 1001
CfoI	GCGC	2 cut(s)	184, 1317
Cfr13I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
CseI	GACGC	2 cut(s)	123, 366
Csp6I	GTAC	3 cut(s)	823, 1099, 1222
CviAII	CATG	9 cut(s)	412, 602, 646, 654, 666, 710, 857, 1066, 1127
CviQI	GTAC	3 cut(s)	823, 1099, 1222
DdeI	CTNAG	4 cut(s)	345, 534, 757, 1038
DinI	GGCGCC	1 cut(s)	1316
DpnI	GATC	7 cut(s)	93, 150, 204, 372, 426, 899, 1283
DpnII	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
DraI	TTTAAA	1 cut(s)	628
DriI	GACNNNNNGTC	1 cut(s)	1355
EaeI	YGGCCR	2 cut(s)	234, 517
Eam1104I	CTCTTC	2 cut(s)	58, 999
Eam1105I	GACNNNNNGTC	1 cut(s)	1355
EarI	CTCTTC	2 cut(s)	58, 999
Eco130I	CCWWGG	4 cut(s)	306, 835, 972, 1380
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	3 cut(s)	812, 886, 1145
Eco57I	CTGAAG	3 cut(s)	39, 593, 1023
EcoO109I	RGGNCCY	2 cut(s)	390, 1145
EcoT14I	CCWWGG	4 cut(s)	306, 835, 972, 1380
EcoT38I	GRGCYC	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	1316
EheI	GGCGCC	1 cut(s)	1316
ErhI	CCWWGG	4 cut(s)	306, 835, 972, 1380
Esp3I	CGTCTC	3 cut(s)	106, 384, 1287
FaeI	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
FatI	CATG	9 cut(s)	411, 601, 645, 653, 665, 709, 856, 1065, 1126
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	180, 234, 338, 543, 1232
FokI	GGATG	2 cut(s)	329, 887
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	5 cut(s)	180, 234, 338, 543, 1232
FspBI	CTAG	4 cut(s)	902, 959, 1142, 1388
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	2 cut(s)	183, 1316
GluI	GCNGC	5 cut(s)	180, 234, 338, 543, 1232
GsuI	CTGGAG	3 cut(s)	530, 726, 1343
HaeII	RGCGCY	1 cut(s)	1318
HaeIII	GGCC	5 cut(s)	236, 392, 519, 926, 971
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	2 cut(s)	123, 366
HhaI	GCGC	2 cut(s)	184, 1317
Hin1I	GRCGYC	3 cut(s)	377, 954, 1315
Hin1II	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
Hin6I	GCGC	2 cut(s)	182, 1315
HinP1I	GCGC	2 cut(s)	182, 1315
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	5 cut(s)	436, 650, 671, 753, 1299
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	3 cut(s)	998, 1202, 1279
Hpy166II	GTNNAC	3 cut(s)	25, 823, 1193
Hpy188I	TCNGA	4 cut(s)	58, 202, 384, 997
Hpy188III	TCNNGA	5 cut(s)	781, 950, 1029, 1322, 1388
Hpy8I	GTNNAC	3 cut(s)	25, 823, 1193
HpyAV	CCTTC	7 cut(s)	94, 216, 228, 265, 725, 778, 1328
HpyCH4III	ACNGT	4 cut(s)	158, 890, 1169, 1226
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	9 cut(s)	66, 340, 856, 1069, 1076, 1088, 1130, 1367, 1397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 346, 539, 1256
HpyF3I	CTNAG	4 cut(s)	345, 534, 757, 1038
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	3 cut(s)	377, 954, 1315
Hsp92II	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
HspAI	GCGC	2 cut(s)	182, 1315
KasI	GGCGCC	1 cut(s)	1314
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
LmnI	GCTCC	4 cut(s)	142, 220, 511, 1181
Lsp1109I	GCAGC	4 cut(s)	166, 324, 554, 1218
LweI	GCATC	7 cut(s)	49, 274, 520, 865, 955, 1147, 1193
MaeI	CTAG	4 cut(s)	902, 959, 1142, 1388
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	2 cut(s)	35, 1115
MalI	GATC	7 cut(s)	93, 150, 204, 372, 426, 899, 1283
MboI	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
MboII	GAAGA	7 cut(s)	45, 218, 485, 599, 907, 1016, 1063
MfeI	CAATTG	4 cut(s)	292, 700, 1260, 1362
MflI	RGATCY	2 cut(s)	370, 897
MhlI	GDGCHC	3 cut(s)	197, 394, 402
MluCI	AATT	8 cut(s)	292, 592, 700, 1032, 1136, 1150, 1260, 1362
Mly113I	GGCGCC	1 cut(s)	1315
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	7 cut(s)	61, 271, 811, 877, 991, 1104, 1258
MseI	TTAA	6 cut(s)	78, 353, 627, 827, 1236, 1408
MslI	CAYNNNNRTG	2 cut(s)	156, 861
MspI	CCGG	1 cut(s)	140
MunI	CAATTG	4 cut(s)	292, 700, 1260, 1362
Mva1269I	GAATGC	1 cut(s)	340
MwoI	GCNNNNNNNGC	4 cut(s)	80, 346, 539, 1256
NarI	GGCGCC	1 cut(s)	1315
NdeII	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
NlaIII	CATG	9 cut(s)	415, 605, 649, 657, 669, 713, 860, 1069, 1130
NlaIV	GGNNCC	2 cut(s)	392, 1316
NmeAIII	GCCGAG	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	183
NspI	RCATGY	3 cut(s)	713, 860, 1130
OliI	CACNNNNGTG	1 cut(s)	156
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	4 cut(s)	436, 650, 671, 1299
PkrI	GCNGC	5 cut(s)	181, 235, 339, 544, 1233
PleI	GAGTC	1 cut(s)	747
PluTI	GGCGCC	1 cut(s)	1318
PpsI	GAGTC	1 cut(s)	747
PpuMI	RGGWCCY	1 cut(s)	1145
PshAI	GACNNNNGTC	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	1335
Psp5II	RGGWCCY	1 cut(s)	1145
PspN4I	GGNNCC	2 cut(s)	392, 1316
PspOMI	GGGCCC	1 cut(s)	390
PspPI	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
PspPPI	RGGWCCY	1 cut(s)	1145
PstNI	CAGNNNCTG	2 cut(s)	533, 1001
PsuI	RGATCY	2 cut(s)	370, 897
RsaI	GTAC	3 cut(s)	824, 1100, 1223
RsaNI	GTAC	3 cut(s)	823, 1099, 1222
RseI	CAYNNNNRTG	2 cut(s)	156, 861
SaqAI	TTAA	6 cut(s)	78, 353, 627, 827, 1236, 1408
SatI	GCNGC	5 cut(s)	180, 234, 338, 543, 1232
Sau3AI	GATC	7 cut(s)	91, 148, 202, 370, 424, 897, 1281
Sau96I	GGNCC	7 cut(s)	390, 391, 812, 886, 924, 969, 1145
SchI	GAGTC	1 cut(s)	747
SduI	GDGCHC	3 cut(s)	197, 394, 402
SfaNI	GCATC	7 cut(s)	49, 274, 520, 865, 955, 1147, 1193
SfoI	GGCGCC	1 cut(s)	1316
SinI	GGWCC	3 cut(s)	812, 886, 1145
SmiMI	CAYNNNNRTG	2 cut(s)	156, 861
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	8 cut(s)	292, 592, 700, 1032, 1136, 1150, 1260, 1362
SsiI	CCGC	2 cut(s)	233, 1279
SspDI	GGCGCC	1 cut(s)	1314
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	4 cut(s)	902, 959, 1142, 1388
StyI	CCWWGG	4 cut(s)	306, 835, 972, 1380
TaaI	ACNGT	4 cut(s)	158, 890, 1169, 1226
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	4 cut(s)	249, 282, 418, 747
TasI	AATT	8 cut(s)	292, 592, 700, 1032, 1136, 1150, 1260, 1362
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	4 cut(s)	436, 650, 671, 1299
Tru1I	TTAA	6 cut(s)	78, 353, 627, 827, 1236, 1408
Tru9I	TTAA	6 cut(s)	78, 353, 627, 827, 1236, 1408
TseI	GCWGC	4 cut(s)	179, 337, 542, 1231
TspDTI	ATGAA	4 cut(s)	573, 634, 1058, 1227
TspGWI	ACGGA	1 cut(s)	1311
VpaK11BI	GGWCC	3 cut(s)	812, 886, 1145
XapI	RAATTY	1 cut(s)	1032
XbaI	TCTAGA	1 cut(s)	1387
XceI	RCATGY	3 cut(s)	713, 860, 1130
XspI	CTAG	4 cut(s)	902, 959, 1142, 1388
ZraI	GACGTC	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.