Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Reverse (-)

38733415 .. 38778999

Gene Structure 45585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG176000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCAATCCAATCCCTCCAGGTCTCTAACTATTTCAGAAGCCTCCCTCAGGAATATATTTCATTGGCGATTCGCAATTCAAGGCCTTGTGATACCGAATTTGAGGCTCTCTGGTACTGGAATCTCAAATCATATTGGAACAAAGCAGTGGAGATACTATGATTTTGGTCCAAAAGGAGTAGCTGCACTTATTTGTCTTCCTGGAACAGCAGGGATGCCGGATGTCTGTTACAAGAAGATCATGGCATTGTCCCTGAAGATCATGCTGTCCATGCATGAAGAAGAATCAAATCAAATATCCTCAGTTCCTCACCATCCAGCTTGTGACCAACTAGTTTCTTGCTCACAATCGTTTGCTAGAGGACTATTGAAGACGCCATCGGCTAGCTTGGTGACTGGAGCTTCTTCTTCATCATCTGCAACCAGCCCTATTCCAGATCACTGCGACACCAAAGACTTCTACTCCTACCTCGTTCGTGGCATCCTTAAGCCCCTCAACATTCAACAAGACTGTGATGCTAGTTTTGTACCAAATGGAATTGGGAGCAAAGAAATCAACCTGTATTTCAAAGGTTCTGAGCTTCTTGTTGATTTACAAGATTATGACTATTCTTTGGACTTGTGGAGTCTTGGTTGTATGTTTCCTGGAATGATATTTCGTAAGAAGCCATTTTTTTATGGACGTGATAACTATGATCAACTAGTGAAAATAGCAAAGATGCTAAAGAGTGTTACAACTATCAGGCTCACACACAATTGGTGGCATGTAGCTCTTTGTTTTATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCACTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGTCATTTAGTTCACAACCAGAAACCGGGGTTGTTGTGGATGAGGATGGAAAACTAGAAGACAGAGTTGGAGTGGCCTTGAAATGTCTTCCAAACTATGATCCTGCTACCTGTATGTTCGAAACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

381

Amino Acids

42.7

Weight (kDa)

6.6

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHM7_cyt	PF14703	291 - 350	7.9e-12	Cytosolic domain of 10TM putative phosphate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	894
AclWI	GGATC	1 cut(s)	1109
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	3 cut(s)	115, 528, 920
AfiI	CCNNNNNNNGG	3 cut(s)	48, 875, 1040
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	80, 370, 503, 568, 1096
AhlI	ACTAGT	2 cut(s)	331, 700
AjiI	CACGTC	1 cut(s)	683
AjnI	CCWGG	3 cut(s)	17, 199, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	1065, 1097
AluBI	AGCT	7 cut(s)	182, 320, 387, 401, 580, 770, 995
AluI	AGCT	7 cut(s)	182, 320, 387, 401, 580, 770, 995
Alw26I	GTCTC	2 cut(s)	27, 866
AlwI	GGATC	1 cut(s)	1109
AoxI	GGCC	2 cut(s)	82, 1089
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	97
ArsI	GACNNNNNNTTYG	2 cut(s)	865, 897
Asp700I	GAANNNNTTC	1 cut(s)	975
AspS9I	GGNCC	2 cut(s)	167, 866
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	2 cut(s)	302, 403
AsuII	TTCGAA	1 cut(s)	1134
AsuNHI	GCTAGC	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	167, 866
AxyI	CCTNAGG	1 cut(s)	47
BbsI	GAAGAC	4 cut(s)	188, 377, 1080, 1094
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	5 cut(s)	321, 385, 834, 920, 1055
BciT130I	CCWGG	3 cut(s)	19, 201, 645
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	1042
BcoDI	GTCTC	2 cut(s)	27, 866
BcuI	ACTAGT	2 cut(s)	331, 700
BfaI	CTAG	6 cut(s)	332, 357, 384, 519, 701, 1070
BfrI	CTTAAG	1 cut(s)	485
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	920
Bme1390I	CCNGG	4 cut(s)	19, 201, 645, 1042
Bme18I	GGWCC	2 cut(s)	167, 866
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	167, 866
BmrFI	CCNGG	4 cut(s)	19, 201, 645, 1042
BmsI	GCATC	6 cut(s)	204, 489, 505, 708, 847, 898
BmtI	GCTAGC	1 cut(s)	387
BpiI	GAAGAC	4 cut(s)	188, 377, 1080, 1094
BpmI	CTGGAG	2 cut(s)	417, 780
Bpu14I	TTCGAA	1 cut(s)	1134
BpuMI	CCSGG	1 cut(s)	1042
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	1041
BsaXI	ACNNNNNCTCC	4 cut(s)	446, 476, 616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 875, 1040
Bse1I	ACTGG	5 cut(s)	121, 400, 797, 966, 1004
Bse21I	CCTNAGG	1 cut(s)	47
BseBI	CCWGG	3 cut(s)	19, 201, 645
BseDI	CCNNGG	1 cut(s)	1041
BseGI	GGATG	7 cut(s)	219, 226, 313, 480, 884, 1060, 1066
BseLI	CCNNNNNNNGG	3 cut(s)	48, 875, 1040
BseMII	CTCAG	3 cut(s)	61, 315, 567
BseNI	ACTGG	5 cut(s)	121, 400, 797, 966, 1004
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	84, 1091
BsiSI	CCGG	2 cut(s)	218, 1041
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	48, 875, 1040
BsmAI	GTCTC	2 cut(s)	27, 866
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	84, 1091
Bso31I	GGTCTC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	1134
Bsp143I	GATC	5 cut(s)	237, 258, 436, 694, 1114
BspACI	CCGC	1 cut(s)	894
BspANI	GGCC	2 cut(s)	84, 1091
BspCNI	CTCAG	3 cut(s)	60, 314, 568
BspOI	GCTAGC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	1109
BspT104I	TTCGAA	1 cut(s)	1134
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	27
BsrI	ACTGG	5 cut(s)	121, 400, 797, 966, 1004
BssECI	CCNNGG	1 cut(s)	1041
BssMI	GATC	5 cut(s)	237, 258, 436, 694, 1114
BssNI	GRCGYC	1 cut(s)	374
Bst2UI	CCWGG	3 cut(s)	19, 201, 645
Bst4CI	ACNGT	2 cut(s)	512, 1141
BstACI	GRCGYC	1 cut(s)	374
BstAFI	CTTAAG	1 cut(s)	485
BstBI	TTCGAA	1 cut(s)	1134
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	4 cut(s)	47, 301, 576, 811
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	7 cut(s)	219, 226, 313, 480, 884, 1060, 1066
BstKTI	GATC	5 cut(s)	240, 261, 439, 697, 1117
BstMAI	GTCTC	2 cut(s)	27, 866
BstMBI	GATC	5 cut(s)	237, 258, 436, 694, 1114
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	3 cut(s)	19, 201, 645
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	4 cut(s)	17, 199, 643, 1040
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	4 cut(s)	188, 377, 1080, 1094
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	84, 1091
BtrI	CACGTC	1 cut(s)	683
BtsCI	GGATG	7 cut(s)	219, 226, 313, 480, 884, 1060, 1066
BtsI	GCAGTG	2 cut(s)	152, 439
BtsIMutI	CAGTG	3 cut(s)	152, 439, 959
Cac8I	GCNNGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	167, 866
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	114, 527, 919
CviAII	CATG	5 cut(s)	241, 262, 271, 275, 764
CviQI	GTAC	3 cut(s)	114, 527, 919
DdeI	CTNAG	4 cut(s)	47, 301, 576, 811
DpnI	GATC	5 cut(s)	239, 260, 438, 696, 1116
DpnII	GATC	5 cut(s)	237, 258, 436, 694, 1114
Eco147I	AGGCCT	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	167, 866
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	17, 199, 643
EcoT22I	ATGCAT	1 cut(s)	276
FaeI	CATG	5 cut(s)	244, 265, 274, 278, 767
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	5 cut(s)	240, 261, 270, 274, 763
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	7 cut(s)	226, 233, 300, 467, 891, 1067, 1073
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	6 cut(s)	332, 357, 384, 519, 701, 1070
GluI	GCNGC	1 cut(s)	183
GsuI	CTGGAG	2 cut(s)	417, 780
HaeIII	GGCC	2 cut(s)	84, 1091
HapII	CCGG	2 cut(s)	218, 1041
HgaI	GACGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	5 cut(s)	244, 265, 274, 278, 767
HinfI	GANTC	7 cut(s)	69, 120, 284, 625, 807, 976, 986
HpaII	CCGG	2 cut(s)	218, 1041
HphI	GGTGA	2 cut(s)	302, 403
Hpy166II	GTNNAC	1 cut(s)	1028
Hpy188I	TCNGA	2 cut(s)	37, 577
Hpy188III	TCNNGA	3 cut(s)	49, 434, 835
Hpy8I	GTNNAC	1 cut(s)	1028
HpyAV	CCTTC	2 cut(s)	779, 832
HpyCH4III	ACNGT	2 cut(s)	512, 1141
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	4 cut(s)	4, 185, 274, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	4 cut(s)	47, 301, 576, 811
HpySE526I	ACGT	1 cut(s)	682
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	5 cut(s)	244, 265, 274, 278, 767
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	5 cut(s)	237, 258, 436, 694, 1114
LmnI	GCTCC	2 cut(s)	398, 543
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	6 cut(s)	204, 489, 505, 708, 847, 898
MaeI	CTAG	6 cut(s)	332, 357, 384, 519, 701, 1070
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	4 cut(s)	227, 323, 391, 730
MalI	GATC	5 cut(s)	239, 260, 438, 696, 1116
MboI	GATC	5 cut(s)	237, 258, 436, 694, 1114
MfeI	CAATTG	1 cut(s)	754
MluCI	AATT	4 cut(s)	75, 97, 537, 754
MlyI	GAGTC	3 cut(s)	634, 801, 980
MmeI	TCCRAC	2 cut(s)	825, 1063
Mph1103I	ATGCAT	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	3 cut(s)	486, 936, 1144
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	2 cut(s)	218, 1041
MspR9I	CCNGG	4 cut(s)	19, 201, 645, 1042
MunI	CAATTG	1 cut(s)	754
MvaI	CCWGG	3 cut(s)	19, 201, 645
MwoI	GCNNNNNNNGC	1 cut(s)	271
NciI	CCSGG	1 cut(s)	1042
NdeII	GATC	5 cut(s)	237, 258, 436, 694, 1114
NheI	GCTAGC	1 cut(s)	383
NlaIII	CATG	5 cut(s)	244, 265, 274, 278, 767
NmuCI	GTSAC	2 cut(s)	323, 391
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	1 cut(s)	767
NspV	TTCGAA	1 cut(s)	1134
PceI	AGGCCT	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	4 cut(s)	69, 120, 284, 976
PfoI	TCCNGGA	2 cut(s)	199, 643
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	3 cut(s)	633, 801, 980
PpsI	GAGTC	3 cut(s)	633, 801, 980
Psp6I	CCWGG	3 cut(s)	17, 199, 643
PspGI	CCWGG	3 cut(s)	17, 199, 643
PspPI	GGNCC	2 cut(s)	167, 866
RsaI	GTAC	3 cut(s)	115, 528, 920
RsaNI	GTAC	3 cut(s)	114, 527, 919
SaqAI	TTAA	3 cut(s)	486, 936, 1144
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	5 cut(s)	237, 258, 436, 694, 1114
Sau96I	GGNCC	2 cut(s)	167, 866
ScaI	AGTACT	1 cut(s)	920
SchI	GAGTC	3 cut(s)	634, 801, 980
ScrFI	CCNGG	4 cut(s)	19, 201, 645, 1042
SfaNI	GCATC	6 cut(s)	204, 489, 505, 708, 847, 898
SfuI	TTCGAA	1 cut(s)	1134
SinI	GGWCC	2 cut(s)	167, 866
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SpeI	ACTAGT	2 cut(s)	331, 700
Sse9I	AATT	4 cut(s)	75, 97, 537, 754
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	894
SspMI	CTAG	6 cut(s)	332, 357, 384, 519, 701, 1070
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	4 cut(s)	17, 199, 643, 1040
TaaI	ACNGT	2 cut(s)	512, 1141
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	3 cut(s)	801, 915, 1134
TasI	AATT	4 cut(s)	75, 97, 537, 754
TatI	WGTACW	1 cut(s)	918
TfiI	GAWTC	4 cut(s)	69, 120, 284, 976
Tru1I	TTAA	3 cut(s)	486, 936, 1144
Tru9I	TTAA	3 cut(s)	486, 936, 1144
TscAI	CASTG	3 cut(s)	152, 446, 966
TseFI	GTSAC	2 cut(s)	323, 391
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	2 cut(s)	323, 391
TspDTI	ATGAA	3 cut(s)	50, 291, 399
TspRI	CASTG	3 cut(s)	152, 446, 966
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	167, 866
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	6 cut(s)	332, 357, 384, 519, 701, 1070
ZrmI	AGTACT	1 cut(s)	920
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.