Rorug03G0340400

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004639
Physical Location & Seq
Forward (+)
40604720 .. 40605046
327 bp
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UTR
Exon/CDS
Intron
Rorug03G0340400.1

Sequence Viewer

Length: 327 bp
ATGTACAGAGACAAAGAAAAGGCATCATTCATACAAGAACATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGATATCATTTAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGTCCGTAAATTCTGAAGTGTCGTCTCTTCAAATTGCTTCATCTCCAATAGTTTTAGATGAAGGCAACGGCGCAACTTCTAAACCTTCTTTCATGGAGCGGCCAATAGGCCAAAAACAAGCTAAGGACTTGTTAAAAAGAAAAGGTAAAAGAGAATGTGGCTTCACAATTGGAACAATTCAGGGCTCTCAAAAGAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.2

Weight (kDa)

10.15

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 10 - 88 6.6e-09 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AciI CCGC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 58, 155
AluBI AGCT 3 cut(s) 98, 245, 324
AluI AGCT 3 cut(s) 98, 245, 324
Alw26I GTCTC 2 cut(s) 3, 153
AoxI GGCC 2 cut(s) 224, 232
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 133
AspLEI GCGC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 3, 153
BfaI CTAG 1 cut(s) 114
BisI GCNGC 2 cut(s) 99, 224
BlsI GCNGC 2 cut(s) 100, 225
BmsI GCATC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 2 cut(s) 226, 234
BsmAI GTCTC 2 cut(s) 3, 153
BsmBI CGTCTC 1 cut(s) 153
BsnI GGCC 2 cut(s) 226, 234
Bsp1286I GDGCHC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 1 cut(s) 223
BspANI GGCC 2 cut(s) 226, 234
BsrBI CCGCTC 1 cut(s) 223
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 156
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 197
BstMAI GTCTC 2 cut(s) 3, 153
BstMWI GCNNNNNNNGC 2 cut(s) 95, 104
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 226, 234
CfoI GCGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 217
CviJI RGCY 7 cut(s) 98, 226, 234, 245, 285, 309, 324
CviKI_1 RGCY 7 cut(s) 98, 226, 234, 245, 285, 309, 324
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 220
FaiI YATR 4 cut(s) 32, 42, 63, 218
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 99, 224
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 99, 224
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 196
GluI GCNGC 2 cut(s) 99, 224
HaeIII GGCC 2 cut(s) 226, 234
HhaI GCGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 179, 219
HpyCH4V TGCA 2 cut(s) 101, 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 104
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 2 cut(s) 31, 290
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 223
MboII GAAGA 1 cut(s) 143
MfeI CAATTG 2 cut(s) 102, 291
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 5 cut(s) 102, 133, 156, 291, 300
MseI TTAA 1 cut(s) 257
MunI CAATTG 2 cut(s) 102, 291
MwoI GCNNNNNNNGC 2 cut(s) 95, 104
NlaIII CATG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 100, 225
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 2 cut(s) 99, 224
SduI GDGCHC 1 cut(s) 311
SetI ASST 5 cut(s) 100, 211, 247, 271, 326
SfaNI GCATC 1 cut(s) 32
SgeI CNNG 9 cut(s) 47, 58, 67, 103, 126, 229, 254, 265, 317
Sse9I AATT 5 cut(s) 102, 133, 156, 291, 300
SsiI CCGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 114
TasI AATT 5 cut(s) 102, 133, 156, 291, 300
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 19, 153, 198, 205
TspGWI ACGGA 1 cut(s) 118
XapI RAATTY 1 cut(s) 133
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.