Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Forward (+)

9429008 .. 9432310

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGAGAAAACAGTGAGATGTGTTCGGTGGGGTTATGAGGTTAATACCTCTTCTGATGCTTGCATCGACGCAATTAACTCCTATTTTCAACAGGTTCTTAGTTATGGGAGGAAGAGGAAAGTGATTCTAGAAGCACCACTCTACGATAAAGATTGTGTTTTGGGCAGCATTTTAGCTGCTCATTTCCTTTCTTCATCTGATCCTTCTAGAGCTAATTCCTATGTTGAAGCTGCGGCATCTAATCTCGAACAATCTACACCTTATGAGAAAGCGGTTTACGAGGCTGTTACTTACCTAATCTCTGAGGATAGGGATGACGACTTGGCTTTTGAAATGCACACCAAGCTACTTAAAAGATTCCCAAAGGACTTGGCTTCTTTGAAAAGAGCGCAGCTTTTAAGTTTCTACATGGGTCAACCTGATCCCTTCTTGGGTCTTGTTCAGCAGGTTCTACCTGCGAATCAAGAAGAAAGTTATATTCATGGTTTACTTGCGTTCCCATTGTTAGAACTTGGTCGAATGGAAGAAGCTGCGGCAGCTTCCAGAAAAGGCTATGAGATAAACAAAGAAGACGCTTGGGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCACTCGCAGGAACTTGGCCCTCTTGCTCATCCTTCATGTATACACACAATTGGTGGCATGTTGCTCTCTGTTACTTAGAAGGAGGGTCCCCAATGAGTAAAGTAGAGGAGATTTATGATCATCACATCTGGAAAGAATTGGAGAAAGACGATGCTGTTCCTCCTGAAGTTTATCTCAATGCATTGGGCTTGTTGATACGTTTAGATGTAAGAGATGCTCTTGATGGTTTTGAAGACCGTCTCAAAAACCTTGCAGTTCGTTTAACTAATCAGGCAAACTGGTATTTGGAGTGGCACCTTGATATATTGATAGTTTGGGCACTAGCAAAGGTTGGAGAGACTTCAAGAGCTCATGAATTACTTGAGGGCCTTAAGTTCCGATTATCAAAGAAGAACAAGAAGAAGCAACAAGTGATGCAGAAAGGGATTCAGCTTGGGGAAGCTGTGTATGAATACGCAAGGGGTAACTACGAAAAGGCTCTAGAACTACTGGGTTCAGAGTTCAACGCCATTGGTTACAAGATCGTTGGGGCATCAGACGAACAAATAGATGTTTTCAACGAAATGTGGTGCCAGCTGCTGCTAAAGACAGGCCAATCCTCCACGGCCAAAGAAGTAATCAGAGAGAGGATTAAGGCCAGAGATGGTATTCCTTTCATGTGGCGTTTGCTGGAGAAAAGTTACTCCATGGAAGGCAATGCAGAGGCTGAGAGTAGTGCACGAGAGAGAGCTAAGAAACTTGAATCTTGTTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

468

Amino Acids

53.59

Weight (kDa)

5.59

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	436, 463
AccB1I	GGYRCC	2 cut(s)	942, 1218
AccI	GTMKAC	1 cut(s)	689
AciI	CCGC	3 cut(s)	233, 272, 533
AclWI	GGATC	2 cut(s)	194, 416
AcoI	YGGCCR	1 cut(s)	1254
AcuI	CTGAAG	1 cut(s)	834
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	1019
Alw21I	GWGCWC	2 cut(s)	1000, 1369
Alw26I	GTCTC	2 cut(s)	893, 980
Alw44I	GTGCAC	1 cut(s)	1365
AlwI	GGATC	2 cut(s)	194, 416
AlwNI	CAGNNNCTG	2 cut(s)	1228, 1355
AoxI	GGCC	5 cut(s)	665, 1015, 1240, 1254, 1284
ApaLI	GTGCAC	1 cut(s)	1365
ApeKI	GCWGC	8 cut(s)	165, 176, 230, 391, 530, 536, 1225, 1228
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	666, 735, 1015
AvaII	GGWCC	1 cut(s)	735
BaeGI	GKGCMC	3 cut(s)	583, 970, 1369
BanI	GGYRCC	2 cut(s)	942, 1218
BanII	GRGCYC	1 cut(s)	1000
BauI	CACGAG	1 cut(s)	1368
BbsI	GAAGAC	2 cut(s)	576, 888
Bbv12I	GWGCWC	2 cut(s)	1000, 1369
BbvI	GCAGC	8 cut(s)	163, 177, 217, 403, 517, 548, 1212, 1215
BccI	CCATC	2 cut(s)	866, 1286
BceAI	ACGGC	1 cut(s)	1269
BclI	TGATCA	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	893, 980
BfaI	CTAG	4 cut(s)	128, 207, 971, 1130
BfrI	CTTAAG	1 cut(s)	1019
BfuAI	ACCTGC	2 cut(s)	436, 463
Bme18I	GGWCC	1 cut(s)	735
BmgT120I	GGNCC	3 cut(s)	666, 735, 1015
BmiI	GGNNCC	4 cut(s)	736, 737, 944, 1220
BmrI	ACTGGG	1 cut(s)	1148
BmsI	GCATC	7 cut(s)	46, 72, 245, 790, 853, 1053, 1190
BmuI	ACTGGG	1 cut(s)	1148
BpiI	GAAGAC	2 cut(s)	576, 888
BpmI	CTGGAG	1 cut(s)	1340
BpuEI	CTTGAG	1 cut(s)	1031
BsaJI	CCNNGG	2 cut(s)	1251, 1335
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	932, 1143
Bse3DI	GCAATG	1 cut(s)	1351
BseDI	CCNNGG	2 cut(s)	1251, 1335
BseGI	GGATG	2 cut(s)	319, 677
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	1351
BseMII	CTCAG	2 cut(s)	294, 1347
BseNI	ACTGG	2 cut(s)	932, 1143
BseRI	GAGGAG	1 cut(s)	770
BseSI	GKGCMC	3 cut(s)	583, 970, 1369
BseXI	GCAGC	8 cut(s)	163, 177, 217, 403, 517, 548, 1212, 1215
BshFI	GGCC	5 cut(s)	667, 1017, 1242, 1256, 1286
BshNI	GGYRCC	2 cut(s)	942, 1218
BsiHKAI	GWGCWC	2 cut(s)	1000, 1369
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	893, 980
BsmBI	CGTCTC	1 cut(s)	893
BsmFI	GGGAC	1 cut(s)	721
BsnI	GGCC	5 cut(s)	667, 1017, 1242, 1256, 1286
Bsp1286I	GDGCHC	4 cut(s)	583, 970, 1000, 1369
Bsp143I	GATC	4 cut(s)	199, 421, 766, 1170
Bsp19I	CCATGG	1 cut(s)	1335
BspACI	CCGC	3 cut(s)	233, 272, 533
BspANI	GGCC	5 cut(s)	667, 1017, 1242, 1256, 1286
BspCNI	CTCAG	2 cut(s)	295, 1348
BspHI	TCATGA	1 cut(s)	1000
BspLI	GGNNCC	4 cut(s)	736, 737, 944, 1220
BspMI	ACCTGC	2 cut(s)	436, 463
BspPI	GGATC	2 cut(s)	194, 416
BspT107I	GGYRCC	2 cut(s)	942, 1218
BspTI	CTTAAG	1 cut(s)	1019
BsrDI	GCAATG	1 cut(s)	1351
BsrI	ACTGG	2 cut(s)	932, 1143
BssECI	CCNNGG	2 cut(s)	1251, 1335
BssMI	GATC	4 cut(s)	199, 421, 766, 1170
BssNAI	GTATAC	1 cut(s)	690
BssSI	CACGAG	1 cut(s)	1368
BssT1I	CCWWGG	1 cut(s)	1335
Bst1107I	GTATAC	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	1368
Bst4CI	ACNGT	3 cut(s)	13, 590, 887
Bst6I	CTCTTC	2 cut(s)	55, 107
BstAFI	CTTAAG	1 cut(s)	1019
BstC8I	GCNNGC	2 cut(s)	61, 1223
BstDEI	CTNAG	5 cut(s)	98, 303, 724, 1356, 1380
BstDSI	CCRYGG	2 cut(s)	1251, 1335
BstF5I	GGATG	2 cut(s)	319, 677
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	4 cut(s)	202, 424, 769, 1173
BstMAI	GTCTC	2 cut(s)	893, 980
BstMBI	GATC	4 cut(s)	199, 421, 766, 1170
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 536
BstNSI	RCATGY	1 cut(s)	710
BstSLI	GKGCMC	3 cut(s)	583, 970, 1369
BstV1I	GCAGC	8 cut(s)	163, 177, 217, 403, 517, 548, 1212, 1215
BstV2I	GAAGAC	2 cut(s)	576, 888
BstZ17I	GTATAC	1 cut(s)	690
BsuRI	GGCC	5 cut(s)	667, 1017, 1242, 1256, 1286
BtgI	CCRYGG	2 cut(s)	1251, 1335
BtsCI	GGATG	2 cut(s)	319, 677
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	3 cut(s)	18, 586, 639
BveI	ACCTGC	2 cut(s)	436, 463
Cac8I	GCNNGC	2 cut(s)	61, 1223
CaiI	CAGNNNCTG	2 cut(s)	1228, 1355
CciI	TCATGA	1 cut(s)	1000
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	666, 735, 1015
CseI	GACGC	2 cut(s)	77, 581
DdeI	CTNAG	5 cut(s)	98, 303, 724, 1356, 1380
DpnI	GATC	4 cut(s)	201, 423, 768, 1172
DpnII	GATC	4 cut(s)	199, 421, 766, 1170
DraI	TTTAAA	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	1254
Eam1104I	CTCTTC	2 cut(s)	55, 107
EarI	CTCTTC	2 cut(s)	55, 107
Ecl136II	GAGCTC	1 cut(s)	998
Eco130I	CCWWGG	1 cut(s)	1335
Eco24I	GRGCYC	1 cut(s)	1000
Eco47I	GGWCC	1 cut(s)	735
Eco53kI	GAGCTC	1 cut(s)	998
Eco57I	CTGAAG	1 cut(s)	834
EcoICRI	GAGCTC	1 cut(s)	998
EcoO109I	RGGNCCY	2 cut(s)	735, 1015
EcoT14I	CCWWGG	1 cut(s)	1335
EcoT22I	ATGCAT	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	1000
ErhI	CCWWGG	1 cut(s)	1335
Esp3I	CGTCTC	1 cut(s)	893
FaqI	GGGAC	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	689
FokI	GGATG	2 cut(s)	326, 664
FriOI	GRGCYC	1 cut(s)	1000
FspBI	CTAG	4 cut(s)	128, 207, 971, 1130
GlaI	GCGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	1340
HaeIII	GGCC	5 cut(s)	667, 1017, 1242, 1256, 1286
HgaI	GACGC	2 cut(s)	77, 581
HhaI	GCGC	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	5 cut(s)	124, 357, 460, 1075, 1391
Hpy166II	GTNNAC	5 cut(s)	277, 416, 488, 690, 1367
Hpy188I	TCNGA	7 cut(s)	55, 199, 304, 1028, 1147, 1186, 1271
Hpy8I	GTNNAC	5 cut(s)	277, 416, 488, 690, 1367
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	213, 436, 691, 722, 1334
HpyCH4III	ACNGT	3 cut(s)	13, 590, 887
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	7 cut(s)	63, 337, 830, 902, 1066, 1349, 1367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 536
HpyF3I	CTNAG	5 cut(s)	98, 303, 724, 1356, 1380
HpySE526I	ACGT	1 cut(s)	847
HspAI	GCGC	1 cut(s)	389
KflI	GGGWCCC	1 cut(s)	735
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	199, 421, 766, 1170
Lsp1109I	GCAGC	8 cut(s)	163, 177, 217, 403, 517, 548, 1212, 1215
LweI	GCATC	7 cut(s)	46, 72, 245, 790, 853, 1053, 1190
MaeI	CTAG	4 cut(s)	128, 207, 971, 1130
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	5 cut(s)	286, 719, 1112, 1163, 1328
MalI	GATC	4 cut(s)	201, 423, 768, 1172
MboI	GATC	4 cut(s)	199, 421, 766, 1170
MfeI	CAATTG	1 cut(s)	697
MhlI	GDGCHC	4 cut(s)	583, 970, 1000, 1369
MluCI	AATT	5 cut(s)	72, 214, 697, 785, 1004
MmeI	TCCRAC	1 cut(s)	961
Mph1103I	ATGCAT	1 cut(s)	832
MseI	TTAA	8 cut(s)	42, 75, 351, 398, 624, 911, 1020, 1281
MspA1I	CMGCKG	1 cut(s)	1225
MspCI	CTTAAG	1 cut(s)	1019
MunI	CAATTG	1 cut(s)	697
MwoI	GCNNNNNNNGC	2 cut(s)	343, 536
NcoI	CCATGG	1 cut(s)	1335
NdeII	GATC	4 cut(s)	199, 421, 766, 1170
NlaIV	GGNNCC	4 cut(s)	736, 737, 944, 1220
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	1 cut(s)	710
PagI	TCATGA	1 cut(s)	1000
PfeI	GAWTC	5 cut(s)	124, 357, 460, 1075, 1391
PpuMI	RGGWCCY	1 cut(s)	735
Psp124BI	GAGCTC	1 cut(s)	1000
Psp5II	RGGWCCY	1 cut(s)	735
PspN4I	GGNNCC	4 cut(s)	736, 737, 944, 1220
PspPI	GGNCC	3 cut(s)	666, 735, 1015
PspPPI	RGGWCCY	1 cut(s)	735
PstNI	CAGNNNCTG	2 cut(s)	1228, 1355
PvuII	CAGCTG	1 cut(s)	1225
SacI	GAGCTC	1 cut(s)	1000
SaqAI	TTAA	8 cut(s)	42, 75, 351, 398, 624, 911, 1020, 1281
Sau3AI	GATC	4 cut(s)	199, 421, 766, 1170
Sau96I	GGNCC	3 cut(s)	666, 735, 1015
SduI	GDGCHC	4 cut(s)	583, 970, 1000, 1369
SfaNI	GCATC	7 cut(s)	46, 72, 245, 790, 853, 1053, 1190
SinI	GGWCC	1 cut(s)	735
SmlI	CTYRAG	2 cut(s)	1010, 1019
SmoI	CTYRAG	2 cut(s)	1010, 1019
Sse9I	AATT	5 cut(s)	72, 214, 697, 785, 1004
SsiI	CCGC	3 cut(s)	233, 272, 533
SspMI	CTAG	4 cut(s)	128, 207, 971, 1130
SstI	GAGCTC	1 cut(s)	1000
StyI	CCWWGG	1 cut(s)	1335
TaaI	ACNGT	3 cut(s)	13, 590, 887
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	3 cut(s)	66, 246, 517
TasI	AATT	5 cut(s)	72, 214, 697, 785, 1004
TauI	GCSGC	2 cut(s)	236, 536
TfiI	GAWTC	5 cut(s)	124, 357, 460, 1075, 1391
Tru1I	TTAA	8 cut(s)	42, 75, 351, 398, 624, 911, 1020, 1281
Tru9I	TTAA	8 cut(s)	42, 75, 351, 398, 624, 911, 1020, 1281
TscAI	CASTG	3 cut(s)	18, 593, 639
TseI	GCWGC	8 cut(s)	165, 176, 230, 391, 530, 536, 1225, 1228
TspDTI	ATGAA	8 cut(s)	183, 470, 627, 631, 673, 1017, 1113, 1294
TspRI	CASTG	3 cut(s)	18, 593, 639
Vha464I	CTTAAG	1 cut(s)	1019
VneI	GTGCAC	1 cut(s)	1365
VpaK11BI	GGWCC	1 cut(s)	735
XbaI	TCTAGA	3 cut(s)	127, 206, 1129
XceI	RCATGY	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	689
XspI	CTAG	4 cut(s)	128, 207, 971, 1130
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.