Rh1AG190600

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004639
Physical Location & Seq
Reverse (-)
36234525 .. 36279928
45404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG190600.1

Sequence Viewer

Length: 1029 bp
ATGCAATCCAATCCCTCCAGTAGAAGAAGAAGTCGAAGCAGTTTTATACGAGACTTGAGTCTGCGAGATTCAGATCGGTGTAGAGAAGAGCGTTTCGTATCGAAGATAGTTGGGGTACGAGAAAGAAGAGGAGAGATTGAAGATTTTGGTCGAAGAGGTTGCTGGGTTTTCGAAGAGGTTGCTGATAAGCTGTGGACATGCGTTTGTCAAGAGCGTGGACGTGTGTTGATTATCATTATTGGAACAAAGCAGTGGAGATACTATGATTTTGGTCCAAAAGGAGTAGCTGCACTTATTTGTCTTCCTGGAACAGCAGGGATGCCGGATGTCTGTTACAAGAAGATCATGGCATTGTCCCTGAAGATCATGCTGTCCATGCATGAAGAAGAATCAAATCAAATATCCTCAGTTCCTCACCATCCAGCTTGTGACCAACTAGTTTCTGATGCTAGTTTTGTACCAAATGGAATTGGGAGCAAAGAAATCAACCTGTATTTCAAAGGTTCTGAGCTTCTTGTTGATTTACAAGATTATGACTATTCTTTGGACTTGTGGAGTCTTGGTTGTATGTTTCCTGGAATGATATTTCGTAAGAAGCCATTTTTTTATGGACGTGATAACTATGATCAACTAGTGAAAATAGCAAAGATGCTAAAGAGTGTTACAACTATCAGGCTCACACACAATTGGTGGCATGTAGCTCTTTGTTTTATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCACTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGTCATTTAGTTCACGTTGGGGAGCCGCTGTTTGTGCACAGACAACGCAGAGCAAGAATCCTACGCTGTGGTTGACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

342

Amino Acids

39.36

Weight (kDa)

8.63

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHM7_cyt PF14703 268 - 339 4.6e-16 Cytosolic domain of 10TM putative phosphate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 825, 972
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 3 cut(s) 117, 459, 851
AfiI CCNNNNNNNGG 1 cut(s) 806
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 2 cut(s) 140, 499
AhlI ACTAGT 2 cut(s) 436, 631
AjiI CACGTC 2 cut(s) 221, 614
AjnI CCWGG 2 cut(s) 304, 574
AluBI AGCT 6 cut(s) 190, 287, 425, 511, 701, 926
AluI AGCT 6 cut(s) 190, 287, 425, 511, 701, 926
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 2 cut(s) 45, 797
Alw44I GTGCAC 1 cut(s) 981
ApaLI GTGCAC 1 cut(s) 981
ApeKI GCWGC 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 796, 828
Asp700I GAANNNNTTC 1 cut(s) 906
AspS9I GGNCC 2 cut(s) 272, 797
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 2 cut(s) 272, 797
BaeGI GKGCMC 1 cut(s) 985
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 1 cut(s) 274
BccI CCATC 3 cut(s) 426, 765, 851
BcgI CGANNNNNNTGC 4 cut(s) 141, 161, 175, 195
BciT130I CCWGG 2 cut(s) 306, 576
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 2 cut(s) 45, 797
BcuI ACTAGT 2 cut(s) 436, 631
BfaI CTAG 3 cut(s) 437, 450, 632
BisI GCNGC 2 cut(s) 288, 972
BlsI GCNGC 2 cut(s) 289, 973
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 2 cut(s) 306, 576
Bme18I GGWCC 2 cut(s) 272, 797
BmgBI CACGTC 2 cut(s) 221, 614
BmgT120I GGNCC 2 cut(s) 272, 797
BmiI GGNNCC 1 cut(s) 970
BmrFI CCNGG 2 cut(s) 306, 576
BmsI GCATC 5 cut(s) 309, 436, 639, 778, 829
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 711
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 72
BsaXI ACNNNNNCTCC 4 cut(s) 547, 577, 960, 990
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse1I ACTGG 4 cut(s) 18, 728, 897, 935
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 306, 576
BseGI GGATG 4 cut(s) 324, 331, 418, 815
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMII CTCAG 2 cut(s) 420, 498
BseNI ACTGG 4 cut(s) 18, 728, 897, 935
BseRI GAGGAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 985
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 2 cut(s) 45, 797
BsmFI GGGAC 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 985
Bsp143I GATC 4 cut(s) 73, 342, 363, 625
BspACI CCGC 2 cut(s) 825, 972
BspCNI CTCAG 2 cut(s) 419, 499
BspLI GGNNCC 1 cut(s) 970
BspQI GCTCTTC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 171
BsrI ACTGG 4 cut(s) 18, 728, 897, 935
BssMI GATC 4 cut(s) 73, 342, 363, 625
Bst2UI CCWGG 2 cut(s) 306, 576
Bst6I CTCTTC 4 cut(s) 81, 121, 148, 168
BstBI TTCGAA 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 406, 507, 742
BstF5I GGATG 4 cut(s) 324, 331, 418, 815
BstKTI GATC 4 cut(s) 76, 345, 366, 628
BstMAI GTCTC 2 cut(s) 45, 797
BstMBI GATC 4 cut(s) 73, 342, 363, 625
BstMWI GCNNNNNNNGC 2 cut(s) 376, 980
BstNI CCWGG 2 cut(s) 306, 576
BstNSI RCATGY 2 cut(s) 201, 698
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 304, 574
BstSLI GKGCMC 1 cut(s) 985
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 293
BtrI CACGTC 2 cut(s) 221, 614
BtsCI GGATG 4 cut(s) 324, 331, 418, 815
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 257, 890
Cfr13I GGNCC 2 cut(s) 272, 797
Csp6I GTAC 3 cut(s) 116, 458, 850
CviAII CATG 6 cut(s) 198, 346, 367, 376, 380, 695
CviJI RGCY 9 cut(s) 190, 287, 425, 511, 598, 676, 701, 926, 971
CviKI_1 RGCY 9 cut(s) 190, 287, 425, 511, 598, 676, 701, 926, 971
CviQI GTAC 3 cut(s) 116, 458, 850
DdeI CTNAG 3 cut(s) 406, 507, 742
DpnI GATC 4 cut(s) 75, 344, 365, 627
DpnII GATC 4 cut(s) 73, 342, 363, 625
Eam1104I CTCTTC 4 cut(s) 81, 121, 148, 168
EarI CTCTTC 4 cut(s) 81, 121, 148, 168
Eco47I GGWCC 2 cut(s) 272, 797
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 304, 574
EcoT22I ATGCAT 1 cut(s) 381
FaeI CATG 6 cut(s) 201, 349, 370, 379, 383, 698
FaqI GGGAC 1 cut(s) 340
FatI CATG 6 cut(s) 197, 345, 366, 375, 379, 694
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 288, 972
FokI GGATG 4 cut(s) 331, 338, 405, 822
Fsp4HI GCNGC 2 cut(s) 288, 972
FspBI CTAG 3 cut(s) 437, 450, 632
GluI GCNGC 2 cut(s) 288, 972
GsaI CCCAGC 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 711
HapII CCGG 1 cut(s) 323
Hin1II CATG 6 cut(s) 201, 349, 370, 379, 383, 698
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HinfI GANTC 8 cut(s) 58, 68, 389, 556, 738, 907, 917, 1003
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 5 cut(s) 195, 218, 959, 983, 1020
Hpy188I TCNGA 3 cut(s) 73, 445, 508
Hpy188III TCNNGA 2 cut(s) 209, 766
Hpy8I GTNNAC 5 cut(s) 195, 218, 959, 983, 1020
HpyAV CCTTC 2 cut(s) 710, 763
HpyCH4IV ACGT 3 cut(s) 220, 613, 961
HpyCH4V TGCA 4 cut(s) 4, 290, 379, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 980
HpyF3I CTNAG 3 cut(s) 406, 507, 742
HpySE526I ACGT 3 cut(s) 220, 613, 961
Hsp92II CATG 6 cut(s) 201, 349, 370, 379, 383, 698
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 4 cut(s) 73, 342, 363, 625
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 474, 968
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 5 cut(s) 309, 436, 639, 778, 829
MaeI CTAG 3 cut(s) 437, 450, 632
MaeII ACGT 3 cut(s) 220, 613, 961
MaeIII GTNAC 3 cut(s) 332, 428, 661
MalI GATC 4 cut(s) 75, 344, 365, 627
MboI GATC 4 cut(s) 73, 342, 363, 625
MfeI CAATTG 1 cut(s) 685
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 3 cut(s) 468, 685, 1024
MlyI GAGTC 4 cut(s) 67, 565, 732, 911
MmeI TCCRAC 1 cut(s) 756
MnlI CCTC 6 cut(s) 25, 122, 149, 169, 415, 423
Mph1103I ATGCAT 1 cut(s) 381
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 1 cut(s) 867
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 306, 576
MunI CAATTG 1 cut(s) 685
MvaI CCWGG 2 cut(s) 306, 576
MwoI GCNNNNNNNGC 2 cut(s) 376, 980
NdeII GATC 4 cut(s) 73, 342, 363, 625
NlaIII CATG 6 cut(s) 201, 349, 370, 379, 383, 698
NlaIV GGNNCC 1 cut(s) 970
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 2 cut(s) 201, 698
NspV TTCGAA 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 4 cut(s) 68, 389, 907, 1003
PfoI TCCNGGA 2 cut(s) 304, 574
PkrI GCNGC 2 cut(s) 289, 973
PleI GAGTC 4 cut(s) 66, 564, 732, 911
PpsI GAGTC 4 cut(s) 66, 564, 732, 911
PshAI GACNNNNGTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 304, 574
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 2 cut(s) 304, 574
PspN4I GGNNCC 1 cut(s) 970
PspPI GGNCC 2 cut(s) 272, 797
RsaI GTAC 3 cut(s) 117, 459, 851
RsaNI GTAC 3 cut(s) 116, 458, 850
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 867
SatI GCNGC 2 cut(s) 288, 972
Sau3AI GATC 4 cut(s) 73, 342, 363, 625
Sau96I GGNCC 2 cut(s) 272, 797
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 4 cut(s) 67, 565, 732, 911
ScrFI CCNGG 2 cut(s) 306, 576
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 5 cut(s) 309, 436, 639, 778, 829
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 2 cut(s) 272, 797
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SpeI ACTAGT 2 cut(s) 436, 631
Sse9I AATT 3 cut(s) 468, 685, 1024
SsiI CCGC 2 cut(s) 825, 972
SspMI CTAG 3 cut(s) 437, 450, 632
StyD4I CCNGG 2 cut(s) 304, 574
TaiI ACGT 3 cut(s) 223, 616, 964
TaqI TCGA 6 cut(s) 34, 101, 151, 171, 732, 846
TasI AATT 3 cut(s) 468, 685, 1024
TatI WGTACW 1 cut(s) 849
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 4 cut(s) 68, 389, 907, 1003
Tru1I TTAA 1 cut(s) 867
Tru9I TTAA 1 cut(s) 867
TscAI CASTG 2 cut(s) 257, 897
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 396
TspRI CASTG 2 cut(s) 257, 897
VneI GTGCAC 1 cut(s) 981
VpaK11BI GGWCC 2 cut(s) 272, 797
XceI RCATGY 2 cut(s) 201, 698
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 3 cut(s) 437, 450, 632
ZrmI AGTACT 1 cut(s) 851
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.