Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004639

Physical Location & Seq

Genomic Coordinates Reverse (-)

46438333 .. 46439118

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCATTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGTCATTTAGTTCACGTTGGGGAGCCGCTGTTTGTGCACAGACAACGCAGAGCAAGAATCCTACGCTGTGGTTGACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

6.82

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHM7_cyt	PF14703	32 - 103	4.3e-17	Cytosolic domain of 10TM putative phosphate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27110 AT1G27110 AT1G27110 AT1G27110 AT1G27150
fragaria_vesca	FvH4_4g35610
malus_domestica	MD16G1081000.v1.1
prunus_persica	Prupe.1G265000_v2.0.a1 Prupe.1G265000_v2.0.a1
pyrus_communis	pycom13g07070 pycom16g07000
rosa_chinensis	RchiOBHm_Chr2g0130381 RchiOBHm_Chr4g0445221 RchiOBHm_Chr7g0206221
rosa_laevigata	RLG00000009788 RLG00000028785
rosa_multiflora	Rmu_sc0000050.1_g000030 Rmu_sc0031087.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385730
rosa_rugosa	Rorug03G0340400 Rorug04G0360000
rosa_samantha	Rh1AG190600 Rh1CG176000 Rh2BG351600 Rh4AG420900 Rh4BG432800 Rh4CG447500 Rh4DG154900 Rh4DG428900 Rh7DG233700
rosa_wichuraiana	Rw4G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 261
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	86
Alw44I	GTGCAC	1 cut(s)	270
ApaLI	GTGCAC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	274
BccI	CCATC	2 cut(s)	54, 140
BcoDI	GTCTC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmcAI	AGTACT	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	2 cut(s)	67, 118
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	17, 224
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	17, 224
BseSI	GKGCMC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	274
BspACI	CCGC	2 cut(s)	114, 261
BspLI	GGNNCC	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	17, 224
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	104
BstMAI	GTCTC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	139
CviJI	RGCY	2 cut(s)	215, 260
CviKI_1	RGCY	2 cut(s)	215, 260
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	86
FaiI	YATR	3 cut(s)	40, 42, 51
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	4 cut(s)	27, 196, 206, 292
Hpy166II	GTNNAC	3 cut(s)	248, 272, 309
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	248, 272, 309
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	5 cut(s)	30, 40, 81, 102, 237
LweI	GCATC	2 cut(s)	67, 118
MaeII	ACGT	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	21, 200
MmeI	TCCRAC	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	196, 292
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	21, 200
PpsI	GAGTC	2 cut(s)	21, 200
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	86
ScaI	AGTACT	1 cut(s)	140
SchI	GAGTC	2 cut(s)	21, 200
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	3 cut(s)	10, 217, 253
SfaNI	GCATC	2 cut(s)	67, 118
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	2 cut(s)	114, 261
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	21, 135
TasI	AATT	1 cut(s)	313
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	196, 292
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.