Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Forward (+)

11057105 .. 11059037

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGAGTCAATGGTCTAATTTTCATCAGATTGGGAGAAACTCTTTCTTAGCTGCTTCTACTGTTTACGTTTCAAACGAATTCAACTTCTTAAACACTTCTCTTCTTAATCGAAGAAGCTTCTGTTTTGCAGAAGGAGATCGATCCAGCTTTGTAGTGTTGAAATCGGAAGCAGAGTTCAACAGTGCATTGAGTAAAGCTCGAGATGGATCTTTGCCATCGGTTTTCTATTTCACTGCCGCATGGTGTGGACCTTGCAGGCTTATCTCTCCTGTGATATTGGAGCTCAGTAATAAATATCCTGATGTAACAACGTATAAGGTCGACATTGACGAGGGCGGTCTATCAAATGCTATTGGGAAGTTAAATGTATCTGCTGTGCCAACACTGCAATTCTTCAAAGGTGGCGTGAAGAAAGCAGAGATTGTAGGCGTTGATGTGGTGAGGCTGAAGAGTGTCATGGAACAACTCTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

159

Amino Acids

17.62

Weight (kDa)

9.01

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	53 - 149	8.3e-18	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	2 cut(s)	240, 339
AclWI	GGATC	2 cut(s)	138, 217
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	470
AgsI	TTSAA	5 cut(s)	75, 85, 163, 181, 400
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	5 cut(s)	53, 120, 150, 200, 286
AluI	AGCT	5 cut(s)	53, 120, 150, 200, 286
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	138, 217
Ama87I	CYCGRG	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	200, 226
BisI	GCNGC	2 cut(s)	54, 240
BlsI	GCNGC	2 cut(s)	55, 241
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
Bsa29I	ATCGAT	1 cut(s)	142
BseCI	ATCGAT	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	139, 143, 209
BspACI	CCGC	2 cut(s)	240, 339
BspCNI	CTCAG	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	142
BspPI	GGATC	2 cut(s)	138, 217
BssMI	GATC	3 cut(s)	139, 143, 209
Bst4CI	ACNGT	2 cut(s)	64, 185
Bst6I	CTCTTC	2 cut(s)	108, 446
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	49, 287
BstKTI	GATC	3 cut(s)	142, 146, 212
BstMBI	GATC	3 cut(s)	139, 143, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	142
BtsI	GCAGTG	2 cut(s)	234, 386
BtsIMutI	CAGTG	3 cut(s)	190, 234, 386
Cac8I	GCNNGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	142
CviAII	CATG	2 cut(s)	243, 460
CviJI	RGCY	7 cut(s)	53, 120, 150, 200, 262, 286, 448
CviKI_1	RGCY	7 cut(s)	53, 120, 150, 200, 262, 286, 448
DdeI	CTNAG	2 cut(s)	49, 287
DpnI	GATC	3 cut(s)	141, 145, 211
DpnII	GATC	3 cut(s)	139, 143, 209
Eam1104I	CTCTTC	2 cut(s)	108, 446
EarI	CTCTTC	2 cut(s)	108, 446
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	2 cut(s)	246, 463
FaiI	YATR	3 cut(s)	244, 318, 461
FatI	CATG	2 cut(s)	242, 459
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	54, 240
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	54, 240
GluI	GCNGC	2 cut(s)	54, 240
Hin1II	CATG	2 cut(s)	246, 463
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	3 cut(s)	67, 251, 325
Hpy188I	TCNGA	2 cut(s)	30, 169
Hpy188III	TCNNGA	2 cut(s)	203, 302
Hpy8I	GTNNAC	3 cut(s)	67, 251, 325
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	64, 185
HpyCH4IV	ACGT	2 cut(s)	69, 314
HpyCH4V	TGCA	4 cut(s)	131, 188, 258, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	49, 287
HpySE526I	ACGT	2 cut(s)	69, 314
Hsp92II	CATG	2 cut(s)	246, 463
Kzo9I	GATC	3 cut(s)	139, 143, 209
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	160, 244, 285, 315
Lsp1109I	GCAGC	1 cut(s)	40
MaeII	ACGT	2 cut(s)	69, 314
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	3 cut(s)	141, 145, 211
MboI	GATC	3 cut(s)	139, 143, 209
MboII	GAAGA	6 cut(s)	16, 95, 126, 388, 424, 463
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	19, 80, 392
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	2 cut(s)	328, 438
MseI	TTAA	3 cut(s)	92, 108, 365
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	3 cut(s)	139, 143, 209
NlaIII	CATG	2 cut(s)	246, 463
PaeR7I	CTCGAG	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 330
PkrI	GCNGC	2 cut(s)	55, 241
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	92, 108, 365
SatI	GCNGC	2 cut(s)	54, 240
Sau3AI	GATC	3 cut(s)	139, 143, 209
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	19, 80, 392
SsiI	CCGC	2 cut(s)	240, 339
SstI	GAGCTC	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	64, 185
TaiI	ACGT	2 cut(s)	72, 317
TaqI	TCGA	4 cut(s)	112, 142, 202, 324
TasI	AATT	3 cut(s)	19, 80, 392
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	92, 108, 365
Tru9I	TTAA	3 cut(s)	92, 108, 365
TscAI	CASTG	3 cut(s)	190, 241, 393
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	14, 17
TspRI	CASTG	3 cut(s)	190, 241, 393
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.