Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Forward (+)

6729239 .. 6732112

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10290.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGAGGAATTTAGGGATTTTAGCACGACAGTTTCTTTGGAATCGCAGGAAACCAGGCGCAGATCTTCTTCATCATCGTCTCAAGGGTCCTTTTAATTGTGTCCAATCTCAATCCCAATCCCAATCCCAATCCCGAACTACCCAAACCCTTACTGGTTCAACCCCAACCGCACCATCTTCAACAAACACAAAGAAAGTAATTTCCTTTCACTTCCCAGACTTTCGTCCTAATTATCGTCTTCTGGAGAAGACACGCCCCGACAAAGCCACCGGGCCCTCAAACACTATACTTAAGGCACCCGCGGACTTGATGGACGAACTTCGTTCTGTTCGCAATGAACATAAGTCAGCAATTTTCTACATCACTTCATCCAGCTGCGAGGCTTCCCATAAACTTCTATCTCCAGTCATTTTAGAGCTGAGTGGGCGATTCCTACACGTAAGAGTATATAAGCTGATCCTTCCTGAGTATGATGTTGGAGACAAAGTGGGTCCCTTCAATCTCATCAATTTGCCAAATATTACTTTCTTTCAATACGGGGATAAGGCTGCTGAGATTTTTGGTGTTGATATCACTGGCTTGAAACAGACATTTGAAAAACTCTTCAGCTTAGATGATGACGATTTGGAAGAGTCCAACATAACTGAAACCACTCAACCTTCAAAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 Thioredoxin

Protein Analysis

225

Amino Acids

25.23

Weight (kDa)

8.94

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccII	CGCG	1 cut(s)	305
AciI	CCGC	3 cut(s)	171, 303, 305
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	592
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	7 cut(s)	162, 183, 502, 536, 586, 599, 666
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	378, 421, 457, 612
AluI	AGCT	4 cut(s)	378, 421, 457, 612
Alw26I	GTCTC	2 cut(s)	86, 477
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	1 cut(s)	275
ApaI	GGGCCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	378, 551
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	4 cut(s)	89, 275, 276, 494
AsuC2I	CCSGG	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	89, 494
BaeGI	GKGCMC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	2 cut(s)	233, 257
BbvI	GCAGC	2 cut(s)	365, 538
BccI	CCATC	2 cut(s)	184, 307
BciT130I	CCWGG	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	86, 477
BfrI	CTTAAG	1 cut(s)	293
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	2 cut(s)	379, 552
BlsI	GCNGC	2 cut(s)	380, 553
Bme1390I	CCNGG	2 cut(s)	57, 274
Bme18I	GGWCC	2 cut(s)	89, 494
BmgT120I	GGNCC	4 cut(s)	89, 275, 276, 494
BmiI	GGNNCC	5 cut(s)	90, 277, 300, 495, 496
BmrFI	CCNGG	2 cut(s)	57, 274
BoxI	GACNNNNGTC	1 cut(s)	225
BpiI	GAAGAC	2 cut(s)	233, 257
BpmI	CTGGAG	2 cut(s)	266, 390
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bse1I	ACTGG	3 cut(s)	160, 407, 583
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	413, 459, 546
BseNI	ACTGG	3 cut(s)	160, 407, 583
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	365, 538
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	480
BsmAI	GTCTC	2 cut(s)	86, 477
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	277
Bsp120I	GGGCCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	64, 459
BspACI	CCGC	3 cut(s)	171, 303, 305
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	3 cut(s)	414, 460, 547
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	5 cut(s)	90, 277, 300, 495, 496
BspPI	GGATC	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	160, 407, 583
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	64, 459
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	2 cut(s)	611, 627
BstAFI	CTTAAG	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	442
BstDEI	CTNAG	4 cut(s)	422, 468, 555, 613
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	371
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	67, 462
BstMAI	GTCTC	2 cut(s)	86, 477
BstMBI	GATC	2 cut(s)	64, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	57
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	55, 272
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	365, 538
BstV2I	GAAGAC	2 cut(s)	233, 257
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	576
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	4 cut(s)	89, 275, 276, 494
Cfr42I	CCGCGG	1 cut(s)	306
CviJI	RGCY	9 cut(s)	269, 277, 378, 386, 421, 457, 551, 582, 612
CviKI_1	RGCY	9 cut(s)	269, 277, 378, 386, 421, 457, 551, 582, 612
DdeI	CTNAG	4 cut(s)	422, 468, 555, 613
DpnI	GATC	2 cut(s)	66, 461
DpnII	GATC	2 cut(s)	64, 459
Eam1104I	CTCTTC	2 cut(s)	611, 627
EarI	CTCTTC	2 cut(s)	611, 627
Eco24I	GRGCYC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	89, 494
Eco57I	CTGAAG	1 cut(s)	592
EcoO109I	RGGNCCY	3 cut(s)	89, 276, 494
EcoRII	CCWGG	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	86
FaiI	YATR	7 cut(s)	290, 345, 393, 451, 453, 474, 644
FaqI	GGGAC	1 cut(s)	480
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	379, 552
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	379, 552
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	379, 552
GsuI	CTGGAG	2 cut(s)	266, 390
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	3 cut(s)	43, 432, 635
HpaII	CCGG	1 cut(s)	273
Hpy188III	TCNNGA	3 cut(s)	135, 245, 467
HpyAV	CCTTC	3 cut(s)	473, 508, 672
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	4 cut(s)	422, 468, 555, 613
HpySE526I	ACGT	1 cut(s)	441
HspAI	GCGC	1 cut(s)	60
KflI	GGGWCCC	1 cut(s)	494
KspI	CCGCGG	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	64, 459
Lsp1109I	GCAGC	2 cut(s)	365, 538
MaeII	ACGT	1 cut(s)	441
MalI	GATC	2 cut(s)	66, 461
MboI	GATC	2 cut(s)	64, 459
MboII	GAAGA	7 cut(s)	59, 62, 171, 233, 262, 598, 644
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	6 cut(s)	10, 97, 201, 232, 354, 511
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	460, 663
MnlI	CCTC	2 cut(s)	289, 376
MseI	TTAA	2 cut(s)	96, 294
MspA1I	CMGCKG	2 cut(s)	305, 378
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	57, 274
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	2 cut(s)	64, 459
NlaIV	GGNNCC	5 cut(s)	90, 277, 300, 495, 496
PfeI	GAWTC	2 cut(s)	43, 432
PkrI	GCNGC	2 cut(s)	380, 553
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Ppu21I	YACGTR	1 cut(s)	442
PpuMI	RGGWCCY	2 cut(s)	89, 494
PshAI	GACNNNNGTC	1 cut(s)	225
Psp5II	RGGWCCY	2 cut(s)	89, 494
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	5 cut(s)	90, 277, 300, 495, 496
PspOMI	GGGCCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	89, 275, 276, 494
PspPPI	RGGWCCY	2 cut(s)	89, 494
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	378
SacII	CCGCGG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	96, 294
SatI	GCNGC	2 cut(s)	379, 552
Sau3AI	GATC	2 cut(s)	64, 459
Sau96I	GGNCC	4 cut(s)	89, 275, 276, 494
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	57, 274
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	6 cut(s)	380, 423, 444, 459, 614, 664
Sfr303I	CCGCGG	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	89, 494
SmlI	CTYRAG	2 cut(s)	83, 293
SmoI	CTYRAG	2 cut(s)	83, 293
Sse9I	AATT	6 cut(s)	10, 97, 201, 232, 354, 511
SsiI	CCGC	3 cut(s)	171, 303, 305
SspI	AATATT	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	55, 272
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	444
TasI	AATT	6 cut(s)	10, 97, 201, 232, 354, 511
TfiI	GAWTC	2 cut(s)	43, 432
Tru1I	TTAA	2 cut(s)	96, 294
Tru9I	TTAA	2 cut(s)	96, 294
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	2 cut(s)	378, 551
TspDTI	ATGAA	3 cut(s)	62, 354, 360
TspRI	CASTG	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	89, 494
XapI	RAATTY	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.