Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

18969206 .. 18970477

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCGTGGTATAATAAGTTGAAAAAATTGGTTTCACTAAATTGCAAAGCAGAGGATCCTATCCCAATTAGGGTTCATTTTCACCTACACACACACGGACACGGACTTCACGCCTTCACGGCTTCACCTTCACGCACGCCGCTCCCTTCAGGTTCGACAAACATTGTTGTCATAAAGTCAGAGGATGAATACAGCAGCGCAATCAGCAAAGCTAAAGACGGAGCTGAGCCAGCACTTTTCTACTTCACTGCAGTCTGGTGCGGGCCTTGCAGGTTCATATCTCCAGTCATTGGAGAGTTGAGCGAGCAATACCCACATGTAACAACATATAAGATTGACATCGACGAGGAAGGACTTACAAACACTTTGGGCAAGTTGAATATTTCCTCTGTGCCTACATTCCAGTTCTTTCAAGATGGAAAGAAGGTGGCTGAAGTTGTTGGTGCTGATGTTGCTCGCTTGAGAGACACTTTTGGAAAACTCTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

164

Amino Acids

18.08

Weight (kDa)

7.76

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	2 cut(s)	140, 261
AclWI	GGATC	2 cut(s)	50, 63
AcuI	CTGAAG	2 cut(s)	132, 453
AfiI	CCNNNNNNNGG	2 cut(s)	70, 290
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	22, 379, 413
AluBI	AGCT	2 cut(s)	212, 224
AluI	AGCT	2 cut(s)	212, 224
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	50, 63
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	74, 117
BamHI	GGATCC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	140, 196
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	2 cut(s)	141, 197
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 290
Bse1I	ACTGG	2 cut(s)	284, 403
Bse8I	GATNNNNATC	1 cut(s)	338
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	70, 290
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	284, 403
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	70, 290
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	55
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	140, 261
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	50, 63
BsrBI	CCGCTC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	284, 403
BssMI	GATC	1 cut(s)	55
BstC8I	GCNNGC	5 cut(s)	137, 231, 263, 305, 457
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 204, 230, 267, 452
BstNSI	RCATGY	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	5 cut(s)	137, 231, 263, 305, 457
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	263
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	6 cut(s)	122, 212, 224, 229, 265, 431
CviKI_1	RGCY	6 cut(s)	122, 212, 224, 229, 265, 431
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	132, 453
FaeI	CATG	1 cut(s)	320
FaiI	YATR	6 cut(s)	12, 173, 278, 318, 328, 330
FatI	CATG	1 cut(s)	316
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	140, 196
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	140, 196
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	140, 196
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HphI	GGTGA	2 cut(s)	74, 117
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	413
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	124, 138, 156, 344, 418
HpyCH4V	TGCA	3 cut(s)	45, 251, 270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 204, 230, 267, 452
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	147, 221
LpnPI	CCDG	6 cut(s)	135, 241, 243, 256, 297, 416
Lsp1109I	GCAGC	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	57
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	1 cut(s)	55
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	3 cut(s)	26, 40, 66
MnlI	CCTC	4 cut(s)	46, 175, 340, 397
MwoI	GCNNNNNNNGC	5 cut(s)	119, 204, 230, 267, 452
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	320
PciI	ACATGT	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	141, 197
PscI	ACATGT	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	55
SatI	GCNGC	2 cut(s)	140, 196
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	263
SetI	ASST	7 cut(s)	87, 130, 154, 214, 226, 275, 429
SfcI	CTRYAG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	26, 40, 66
SsiI	CCGC	2 cut(s)	140, 261
SspI	AATATT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	155, 342
TasI	AATT	3 cut(s)	26, 40, 66
TauI	GCSGC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	3 cut(s)	65, 201, 265
TspGWI	ACGGA	3 cut(s)	111, 117, 234
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	290
XceI	RCATGY	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.