Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Forward (+)

32568569 .. 32570853

Gene Structure 2285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1228900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCAAGGAATTCAGGTGTAGCCATGGCACGGCAATTGCTCGGCAATCGCAGCAAGTTCTGCGCCGCGCTTCTTCATCGTCACAACCTTCCTTCCAGTTCTTTCCAAACCCTGGCTTCATCAATCCCCATCTCACCACCTCCCCCGCCCACAGCAACCCCTTCCACCTCCAAACCCTTCTCCAATCCCCTCCACCACTCCCCAAACCCTCGCTTTCTGCAGCTCCGACCTCTCTCCTCGCCCTCAGGTTCCTCAAACATTGTTGTCATTAAGTCAGAGGATGAATACAGCAGCGCAATCAGCAAAGCTAAGGACGGAGCCGAGCCAGCACTTTTCTACTTCACTGCAGTCTGGTGCGGGCCTTGCAGGTTCATATCTCCAGTCATTGGAGAGTTGAGCGAGCAATACCCACATGTAACAACATATAAGATTGACATCGACGAGGAAGGACTTACAAACACTTTGGGCAAGTTGAATATTTCCTCTGTGCCTACATTCCAGTTCTTTCAAGATGGAAAGAAGGTGGCTGAAGTTGTTGGTGCTGATGTTGCTCGCTTGAGAGACACTTTTGCAAAACTCTACAAGCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

198

Amino Acids

21.48

Weight (kDa)

9.01

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	89 - 187	2.5e-19	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
AccB7I	CCANNNNNTGG	2 cut(s)	112, 386
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	66, 146, 357
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	549
AfiI	CCNNNNNNNGG	3 cut(s)	30, 112, 386
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	475, 509
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	223, 308
AluI	AGCT	2 cut(s)	223, 308
Alw26I	GTCTC	1 cut(s)	555
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	51, 220, 291
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	3 cut(s)	65, 70, 296
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	126
AxyI	CCTNAGG	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	63, 232, 303
BccI	CCATC	2 cut(s)	137, 506
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	555
BfmI	CTRYAG	2 cut(s)	218, 345
BfuAI	ACCTGC	1 cut(s)	357
BisI	GCNGC	4 cut(s)	52, 66, 221, 292
BlsI	GCNGC	4 cut(s)	53, 67, 222, 293
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	250, 319
BmrFI	CCNGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	24, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 112, 386
Bse1I	ACTGG	3 cut(s)	96, 380, 499
Bse21I	CCTNAGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	24, 111
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	3 cut(s)	30, 112, 386
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	96, 380, 499
BseRI	GAGGAG	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	63, 232, 303
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	361
BslI	CCNNNNNNNGG	3 cut(s)	30, 112, 386
BsmAI	GTCTC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	361
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	66, 146, 357
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	250, 319
BspMAI	CTGCAG	2 cut(s)	222, 349
BspMI	ACCTGC	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	96, 380, 499
BssECI	CCNNGG	2 cut(s)	24, 111
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstC8I	GCNNGC	4 cut(s)	327, 359, 401, 553
BstDEI	CTNAG	2 cut(s)	244, 309
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	3 cut(s)	65, 70, 296
BstMAI	GTCTC	1 cut(s)	555
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 60, 300, 326, 363, 548
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	218, 345
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	3 cut(s)	63, 232, 303
Bsu36I	CCTNAGG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	4 cut(s)	327, 359, 401, 553
CfoI	GCGC	3 cut(s)	65, 70, 296
Cfr13I	GGNCC	1 cut(s)	359
CviAII	CATG	2 cut(s)	25, 413
CviJI	RGCY	8 cut(s)	23, 116, 223, 308, 320, 325, 361, 527
CviKI_1	RGCY	8 cut(s)	23, 116, 223, 308, 320, 325, 361, 527
DdeI	CTNAG	2 cut(s)	244, 309
Eco130I	CCWWGG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	549
Eco81I	CCTNAGG	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	28, 416
FaiI	YATR	5 cut(s)	26, 374, 414, 424, 426
FatI	CATG	2 cut(s)	24, 412
FauI	CCCGC	2 cut(s)	153, 350
Fnu4HI	GCNGC	4 cut(s)	52, 66, 221, 292
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	52, 66, 221, 292
GlaI	GCGC	3 cut(s)	64, 69, 295
GluI	GCNGC	4 cut(s)	52, 66, 221, 292
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	361
HhaI	GCGC	3 cut(s)	65, 70, 296
Hin1II	CATG	2 cut(s)	28, 416
Hin6I	GCGC	3 cut(s)	63, 68, 294
HinP1I	GCGC	3 cut(s)	63, 68, 294
HphI	GGTGA	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	227, 277
Hpy188III	TCNNGA	1 cut(s)	509
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	6 cut(s)	98, 102, 171, 187, 440, 514
HpyCH4V	TGCA	4 cut(s)	220, 347, 366, 572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 60, 300, 326, 363, 548
HpyF3I	CTNAG	2 cut(s)	244, 309
Hsp92II	CATG	2 cut(s)	28, 416
HspAI	GCGC	3 cut(s)	63, 68, 294
LmnI	GCTCC	2 cut(s)	228, 317
Lsp1109I	GCAGC	3 cut(s)	63, 232, 303
MaeIII	GTNAC	2 cut(s)	80, 415
MboII	GAAGA	1 cut(s)	65
MfeI	CAATTG	1 cut(s)	35
MluCI	AATT	2 cut(s)	10, 35
MmeI	TCCRAC	1 cut(s)	250
MseI	TTAA	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	113
MteI	GCGCNGCGC	1 cut(s)	66
MunI	CAATTG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	6 cut(s)	51, 60, 300, 326, 363, 548
NcoI	CCATGG	1 cut(s)	24
NlaIII	CATG	2 cut(s)	28, 416
NlaIV	GGNNCC	2 cut(s)	250, 319
NmeAIII	GCCGAG	2 cut(s)	21, 346
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	416
PciI	ACATGT	1 cut(s)	412
PflMI	CCANNNNNTGG	2 cut(s)	112, 386
PkrI	GCNGC	4 cut(s)	53, 67, 222, 293
PscI	ACATGT	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	250, 319
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	2 cut(s)	222, 349
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	52, 66, 221, 292
Sau96I	GGNCC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	113
SfcI	CTRYAG	2 cut(s)	218, 345
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	2 cut(s)	10, 35
SsiI	CCGC	3 cut(s)	66, 146, 357
SspI	AATATT	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	10, 35
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	51, 220, 291
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	65, 108, 297, 361
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	349
Van91I	CCANNNNNTGG	2 cut(s)	112, 386
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.