MD10G1338300.v1.1

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0004791
Physical Location & Seq
Reverse (-)
41451021 .. 41454863
3843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1338300.v1.1.491

Sequence Viewer

Length: 636 bp
ATGTCGATTCATGTTACTTCCACACCCAAATCACCCGTCTTGCTCGATTCCCTTCATTTTCTGCAACACCGAAGACGGCTGTCCTCGGCGCCCGCCCCGTCCCCGTCCCCGTCCCCAGCCCCAGCAATTAAATTTCCACGCCCCGCGGACATCGTCATCTTGTGGAAACAGGATCAAGTGGAGAGAGCAATACAAAAAGTTCAAGATGGATTATTGCCAGCAGTTTTCTACTTTGCTTCGCAGATATGTGTTGATTCCAATCTCTTTGGATCTCCAACCGTTCGAAAAATGAGGGAAGAATTCCCACATGTAACAGTATACAAGTATGTGCATACTTTTGAGGACGACTTGCTGGGAATGAATGTTATGTTTACGCCAACATTCCATTTCTATCAAAATGGGAAAAAGGTAGACGAGATTTTTGCCAATCCCTATCAAAATAGGACGGCAGATGAGATTCCTGACCTCGCGATGGAAATTTGTGAAAAACTGTACAGGCACGTCATCCAGGTTGAAACCACTCAACCTATGAGCTCATCTGGGAAGGGTAAGGGGAAAAGGAAGAGGAGAACTTATCAACAACTTTTCGTACAAGCTAAGACAGACGAAAACGAAAATGACAAAGTAGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_16 TPR_8 Thioredoxin

Protein Analysis

212

Amino Acids

24.12

Weight (kDa)

9.0

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccI GTMKAC 2 cut(s) 318, 411
AccII CGCG 2 cut(s) 146, 470
AciI CCGC 3 cut(s) 93, 144, 146
AclWI GGATC 2 cut(s) 180, 277
AcsI RAATTY 3 cut(s) 131, 299, 477
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 494, 591
AfiI CCNNNNNNNGG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 2 cut(s) 203, 515
AjiI CACGTC 1 cut(s) 502
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 2 cut(s) 534, 596
AluI AGCT 2 cut(s) 534, 596
Alw21I GWGCWC 1 cut(s) 536
AlwI GGATC 2 cut(s) 180, 277
ApoI RAATTY 3 cut(s) 131, 299, 477
ArsI GACNNNNNNTTYG 4 cut(s) 21, 53, 404, 436
AspLEI GCGC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 24
AsuII TTCGAA 1 cut(s) 283
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 536
BccI CCATC 2 cut(s) 200, 466
BceAI ACGGC 2 cut(s) 92, 462
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 509
BmgBI CACGTC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 509
BoxI GACNNNNGTC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 79
Bpu14I TTCGAA 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 84, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 84, 144
BseGI GGATG 1 cut(s) 504
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 580
BseYI CCCAGC 3 cut(s) 115, 121, 352
Bsh1236I CGCG 2 cut(s) 146, 470
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 536
BslFI GGGAC 3 cut(s) 85, 91, 97
BslI CCNNNNNNNGG 1 cut(s) 472
BsmFI GGGAC 3 cut(s) 85, 91, 97
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 2 cut(s) 172, 269
Bsp68I TCGCGA 1 cut(s) 470
BspACI CCGC 3 cut(s) 93, 144, 146
BspFNI CGCG 2 cut(s) 146, 470
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 2 cut(s) 180, 277
BspT104I TTCGAA 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 84, 144
BssMI GATC 2 cut(s) 172, 269
BssNAI GTATAC 1 cut(s) 319
BssNI GRCGYC 1 cut(s) 89
Bst1107I GTATAC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 280, 316, 492
Bst6I CTCTTC 1 cut(s) 557
BstACI GRCGYC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 93, 219
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 504
BstFNI CGCG 2 cut(s) 146, 470
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 2 cut(s) 175, 272
BstMBI GATC 2 cut(s) 172, 269
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 311
BstPAI GACNNNNGTC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 507
BstUI CGCG 2 cut(s) 146, 470
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BstZ17I GTATAC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 485
BtrI CACGTC 1 cut(s) 502
BtsCI GGATG 1 cut(s) 504
BtuMI TCGCGA 1 cut(s) 470
Cac8I GCNNGC 2 cut(s) 93, 219
CfoI GCGC 1 cut(s) 91
Cfr42I CCGCGG 1 cut(s) 147
Csp6I GTAC 2 cut(s) 493, 590
CviAII CATG 2 cut(s) 11, 308
CviJI RGCY 4 cut(s) 79, 119, 534, 596
CviKI_1 RGCY 4 cut(s) 79, 119, 534, 596
CviQI GTAC 2 cut(s) 493, 590
DdeI CTNAG 1 cut(s) 597
DinI GGCGCC 1 cut(s) 90
DpnI GATC 2 cut(s) 174, 271
DpnII GATC 2 cut(s) 172, 269
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 536
Eco53kI GAGCTC 1 cut(s) 534
EcoICRI GAGCTC 1 cut(s) 534
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 536
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
FaeI CATG 2 cut(s) 14, 311
FaiI YATR 8 cut(s) 12, 247, 309, 319, 327, 333, 368, 530
FaqI GGGAC 3 cut(s) 85, 91, 97
FatI CATG 2 cut(s) 10, 307
FauI CCCGC 2 cut(s) 100, 151
FblI GTMKAC 2 cut(s) 318, 411
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 536
GlaI GCGC 1 cut(s) 90
GsaI CCCAGC 3 cut(s) 119, 125, 356
HaeII RGCGCY 1 cut(s) 92
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 14, 311
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 4 cut(s) 7, 47, 254, 457
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 3 cut(s) 319, 372, 412
Hpy188III TCNNGA 3 cut(s) 203, 461, 469
Hpy8I GTNNAC 3 cut(s) 319, 372, 412
HpyAV CCTTC 2 cut(s) 62, 538
HpyCH4III ACNGT 3 cut(s) 280, 316, 492
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 2 cut(s) 64, 331
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 14, 311
HspAI GCGC 1 cut(s) 89
KasI GGCGCC 1 cut(s) 88
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 2 cut(s) 172, 269
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 2 cut(s) 13, 310
MalI GATC 2 cut(s) 174, 271
MboI GATC 2 cut(s) 172, 269
MboII GAAGA 3 cut(s) 84, 308, 574
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 536
MluCI AATT 4 cut(s) 126, 131, 299, 477
Mly113I GGCGCC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 5 cut(s) 94, 285, 334, 476, 558
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 2 cut(s) 146, 470
NarI GGCGCC 1 cut(s) 89
NdeII GATC 2 cut(s) 172, 269
NlaIII CATG 2 cut(s) 14, 311
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 65
NruI TCGCGA 1 cut(s) 470
NspI RCATGY 1 cut(s) 311
NspV TTCGAA 1 cut(s) 283
PciI ACATGT 1 cut(s) 307
PfeI GAWTC 4 cut(s) 7, 47, 254, 457
PflFI GACNNNGTC 1 cut(s) 152
PluTI GGCGCC 1 cut(s) 92
PscI ACATGT 1 cut(s) 307
PshAI GACNNNNGTC 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 3 cut(s) 115, 121, 352
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 152
RruI TCGCGA 1 cut(s) 470
RsaI GTAC 2 cut(s) 494, 591
RsaNI GTAC 2 cut(s) 493, 590
SacI GAGCTC 1 cut(s) 536
SacII CCGCGG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 2 cut(s) 172, 269
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 536
SetI ASST 7 cut(s) 411, 468, 504, 513, 529, 536, 598
SfoI GGCGCC 1 cut(s) 90
Sfr303I CCGCGG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 283
SgrBI CCGCGG 1 cut(s) 147
Sse9I AATT 4 cut(s) 126, 131, 299, 477
SsiI CCGC 3 cut(s) 93, 144, 146
SspDI GGCGCC 1 cut(s) 88
SstI GAGCTC 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 280, 316, 492
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 5, 45, 283
TasI AATT 4 cut(s) 126, 131, 299, 477
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 4 cut(s) 7, 47, 254, 457
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 44, 374
Tth111I GACNNNGTC 1 cut(s) 152
XapI RAATTY 3 cut(s) 131, 299, 477
XceI RCATGY 1 cut(s) 311
XmiI GTMKAC 2 cut(s) 318, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.