Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

7586435 .. 7589885

Gene Structure 3451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12700.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCGTCAAAAAACCCAGGGCTTCTCCTAGTGCGGCAATTGCTTGCCAATCGCAGCAACCTCTGCGCTGCTCTTCTTCCTCACCATAACAACCTCCCTTCCTATTCAATCCGAATCCTCTCTTCATTCTCAAACCCCCAATCTTCACCAAACCCAACTCCTCCTCCCAACCCAAAACCCTTCTCCAATTTCTCACCCTTTCGATCCTTCTCATCTTCCCCAGCTGCCCCCTCAAACGTTATAACCATCAAGTCTGAGGATGAGTTGAACAGCGCACTCAGCAAAGCTGAAGGTGATTCTCTGCCAGCGATGTTTTACTTCACTGCAGTGTGGTGTGGTCCTTGCAGGTTCATAGCTCCTGTAATTGGGGAGTTGAGTGAGAAATACCCACATGTGACCACATTTAAGATTGACATTGATCAGGAGGGCCTTGGAAGCGCATTGGGCAAGTTGAATATTTCCTCTGTGCCAACATTCCACTTCTTTCAGAATGGAGAAAAGGCAGATGAATTTGTTGGTGCTGATGCTACACGCTTGAAAGATACCTATGCAAAGCTATACAATTATAACCTTATTTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

195

Amino Acids

21.2

Weight (kDa)

7.72

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	94 - 190	7.2e-18	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	242, 567
Acc36I	ACCTGC	1 cut(s)	336
AciI	CCGC	1 cut(s)	34
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	108, 268, 454, 538
AjnI	CCWGG	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	224, 287, 356, 556
AluI	AGCT	4 cut(s)	224, 287, 356, 556
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	54, 68, 224
ApoI	RAATTY	1 cut(s)	509
AspLEI	GCGC	3 cut(s)	68, 275, 440
AspS9I	GGNCC	2 cut(s)	338, 427
AsuHPI	GGTGA	4 cut(s)	74, 138, 186, 305
AvaII	GGWCC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	55, 66, 211
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	18
BclI	TGATCA	1 cut(s)	418
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	4 cut(s)	35, 55, 69, 225
BlsI	GCNGC	4 cut(s)	36, 56, 70, 226
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	338, 427
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	514
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	16, 17, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	16, 17, 430
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	246, 292
BseRI	GAGGAG	2 cut(s)	150, 153
BseXI	GCAGC	3 cut(s)	55, 66, 211
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	203, 418
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	2 cut(s)	247, 291
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	198
BspQI	GCTCTTC	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	16, 17, 430
BssMI	GATC	2 cut(s)	203, 418
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	18
Bst6I	CTCTTC	2 cut(s)	78, 127
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	45, 306
BstDEI	CTNAG	3 cut(s)	255, 278, 579
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	3 cut(s)	68, 275, 440
BstKTI	GATC	2 cut(s)	206, 421
BstMBI	GATC	2 cut(s)	203, 418
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 63, 279, 435, 444
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	55, 66, 211
BsuRI	GGCC	1 cut(s)	429
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	2 cut(s)	321, 333
BtsIMutI	CAGTG	2 cut(s)	321, 333
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	45, 306
CfoI	GCGC	3 cut(s)	68, 275, 440
Cfr13I	GGNCC	2 cut(s)	338, 427
CviAII	CATG	1 cut(s)	392
CviJI	RGCY	6 cut(s)	22, 224, 287, 356, 429, 556
CviKI_1	RGCY	6 cut(s)	22, 224, 287, 356, 429, 556
DdeI	CTNAG	3 cut(s)	255, 278, 579
DpnI	GATC	2 cut(s)	205, 420
DpnII	GATC	2 cut(s)	203, 418
Eam1104I	CTCTTC	2 cut(s)	78, 127
EarI	CTCTTC	2 cut(s)	78, 127
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	395
FaiI	YATR	7 cut(s)	87, 242, 353, 393, 549, 559, 567
FatI	CATG	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	35, 55, 69, 225
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	4 cut(s)	35, 55, 69, 225
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	3 cut(s)	67, 274, 439
GluI	GCNGC	4 cut(s)	35, 55, 69, 225
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	429
HhaI	GCGC	3 cut(s)	68, 275, 440
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	3 cut(s)	66, 273, 438
HinP1I	GCGC	3 cut(s)	66, 273, 438
HinfI	GANTC	2 cut(s)	114, 296
HphI	GGTGA	4 cut(s)	74, 138, 186, 305
Hpy188I	TCNGA	3 cut(s)	113, 256, 489
Hpy188III	TCNNGA	1 cut(s)	422
HpyAV	CCTTC	4 cut(s)	108, 190, 217, 284
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	326, 345, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 63, 279, 435, 444
HpyF3I	CTNAG	3 cut(s)	255, 278, 579
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	3 cut(s)	66, 273, 438
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	203, 418
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	7 cut(s)	3, 30, 234, 318, 331, 372, 407
Lsp1109I	GCAGC	3 cut(s)	55, 66, 211
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	205, 420
MboI	GATC	2 cut(s)	203, 418
MboII	GAAGA	5 cut(s)	65, 68, 114, 135, 207
MfeI	CAATTG	1 cut(s)	38
MluCI	AATT	5 cut(s)	38, 187, 363, 509, 562
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	5 cut(s)	40, 63, 279, 435, 444
NdeII	GATC	2 cut(s)	203, 418
NlaIII	CATG	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	394
NspI	RCATGY	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	326
PasI	CCCWGGG	1 cut(s)	17
PciI	ACATGT	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	114, 296
PkrI	GCNGC	4 cut(s)	36, 56, 70, 226
PscI	ACATGT	1 cut(s)	391
PsiI	TTATAA	2 cut(s)	242, 567
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	338, 427
PstI	CTGCAG	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	4 cut(s)	35, 55, 69, 225
Sau3AI	GATC	2 cut(s)	203, 418
Sau96I	GGNCC	2 cut(s)	338, 427
ScrFI	CCNGG	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	5 cut(s)	38, 187, 363, 509, 562
SsiI	CCGC	1 cut(s)	34
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	430
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	202
TasI	AATT	5 cut(s)	38, 187, 363, 509, 562
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	114, 296
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	328, 333
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	3 cut(s)	54, 68, 224
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	3 cut(s)	114, 340, 522
TspRI	CASTG	2 cut(s)	328, 333
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	395
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.