Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

14941014 .. 14944246

Gene Structure 3233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCCATATTACTTGTGGGCTCTTCTTCTTGGTTTTAAAGGCCCGCTTTCTTCTTCGCCTTAAACCCTCCCTACACATGGAAGCAGCAGAGCTCGACACAAAAATGGCGACAAGAAACTCAGGGCTTCTCCTGGTGCGCCAATTGCTTTCCAATCGCCGCAACCTCTGCGCTGCTCTTCTTCCTCACCACAACCTCCCTTCTTATTCAATCCCAACCCTAACTTCATTCTCAAAGACCCAATCTTCACCTCCTCCCAATCCAAAACCCTTCTCCAATTTCTCAACCTTTCGATCCCTCTCTTCATCCTCAGGTGCTCCCTCCAACATTGTACTCGTTAAGTCTGAGGATGAGTTGAAGAGCGCCCTGAGCAAAGCTAAAGATGGGTCTCTGCCGGCGATTTTTTACTTCACTGCAGTGTGGTGCGGGCCGTGCAGGTTCATAGCTCCAGTTATTGGAGAATTGAGTGAGAAGTACCCACATGTGACGACATTTAAGATTGACATTGACGAGGAGGGCCTTGGAAGTGCATTGGGCAAGTTGAATATTTCCTCTGTGCCAACATTCCAGTTCTTTCAAAATGGGAAAATGGCAGCTGAAGTTGTTGGTGCCGATGCTGCACGCTTGAAAGATATTTTTGGAAAACTCTACAAGCCGGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

221

Amino Acids

24.16

Weight (kDa)

9.41

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	113 - 210	1.1e-17	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	455
AciI	CCGC	3 cut(s)	46, 160, 426
AclWI	GGATC	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	2 cut(s)	333, 476
AfiI	CCNNNNNNNGG	2 cut(s)	79, 455
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	5 cut(s)	210, 358, 544, 578, 628
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	208, 240
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	94, 377, 446, 596
AluI	AGCT	4 cut(s)	94, 377, 446, 596
Alw21I	GWGCWC	2 cut(s)	96, 319
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	4 cut(s)	3, 42, 428, 517
ApeKI	GCWGC	4 cut(s)	86, 173, 593, 617
AspLEI	GCGC	3 cut(s)	141, 173, 365
AspS9I	GGNCC	4 cut(s)	4, 43, 428, 517
AsuHPI	GGTGA	2 cut(s)	179, 240
AxyI	CCTNAGG	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	24, 96
Bbv12I	GWGCWC	2 cut(s)	96, 319
BbvI	GCAGC	4 cut(s)	98, 160, 604, 605
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	5 cut(s)	87, 160, 174, 594, 618
BlsI	GCNGC	5 cut(s)	88, 161, 175, 595, 619
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	4 cut(s)	4, 43, 428, 517
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 455
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	2 cut(s)	449, 568
Bse21I	CCTNAGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	2 cut(s)	305, 355
BseLI	CCNNNNNNNGG	2 cut(s)	79, 455
BseMII	CTCAG	4 cut(s)	135, 324, 336, 359
BseNI	ACTGG	2 cut(s)	449, 568
BseRI	GAGGAG	2 cut(s)	243, 527
BseXI	GCAGC	4 cut(s)	98, 160, 604, 605
BsgI	GTGCAG	2 cut(s)	454, 603
BshFI	GGCC	4 cut(s)	5, 44, 430, 519
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	2 cut(s)	96, 319
BsiSI	CCGG	2 cut(s)	395, 656
BslI	CCNNNNNNNGG	2 cut(s)	79, 455
BsmAI	GTCTC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	5, 44, 430, 519
Bso31I	GGTCTC	1 cut(s)	393
Bsp1286I	GDGCHC	3 cut(s)	24, 96, 319
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	3 cut(s)	46, 160, 426
BspANI	GGCC	4 cut(s)	5, 44, 430, 519
BspCNI	CTCAG	4 cut(s)	134, 323, 337, 360
BspLI	GGNNCC	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	3 cut(s)	29, 183, 353
BspT107I	GGYRCC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	2 cut(s)	449, 568
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	4 cut(s)	29, 183, 307, 353
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	46, 396, 428, 622
BstDEI	CTNAG	4 cut(s)	121, 310, 345, 368
BstF5I	GGATG	2 cut(s)	305, 355
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	3 cut(s)	141, 173, 365
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 168, 369, 432, 617
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	98, 160, 604, 605
Bsu36I	CCTNAGG	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	5, 44, 430, 519
BtsCI	GGATG	2 cut(s)	305, 355
BtsI	GCAGTG	2 cut(s)	411, 423
BtsIMutI	CAGTG	2 cut(s)	411, 423
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	4 cut(s)	46, 396, 428, 622
CfoI	GCGC	3 cut(s)	141, 173, 365
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	4 cut(s)	4, 43, 428, 517
Csp6I	GTAC	2 cut(s)	332, 475
CviAII	CATG	2 cut(s)	79, 482
CviQI	GTAC	2 cut(s)	332, 475
DdeI	CTNAG	4 cut(s)	121, 310, 345, 368
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	4 cut(s)	29, 183, 307, 353
EarI	CTCTTC	4 cut(s)	29, 183, 307, 353
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	520
Eco24I	GRGCYC	2 cut(s)	24, 96
Eco31I	GGTCTC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	618
Eco81I	CCTNAGG	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	24, 96
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	2 cut(s)	82, 485
FaiI	YATR	4 cut(s)	9, 80, 443, 483
FalI	AAGNNNNNCTT	3 cut(s)	32, 64, 644
FatI	CATG	2 cut(s)	78, 481
FauI	CCCGC	2 cut(s)	53, 419
Fnu4HI	GCNGC	5 cut(s)	87, 160, 174, 594, 618
FokI	GGATG	2 cut(s)	292, 362
FriOI	GRGCYC	2 cut(s)	24, 96
Fsp4HI	GCNGC	5 cut(s)	87, 160, 174, 594, 618
GlaI	GCGC	3 cut(s)	140, 172, 364
GluI	GCNGC	5 cut(s)	87, 160, 174, 594, 618
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	5, 44, 430, 519
HapII	CCGG	2 cut(s)	395, 656
HhaI	GCGC	3 cut(s)	141, 173, 365
Hin1II	CATG	2 cut(s)	82, 485
Hin6I	GCGC	3 cut(s)	139, 171, 363
HinP1I	GCGC	3 cut(s)	139, 171, 363
HpaII	CCGG	2 cut(s)	395, 656
HphI	GGTGA	2 cut(s)	179, 240
Hpy188I	TCNGA	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	210, 280
HpyCH4V	TGCA	4 cut(s)	416, 435, 530, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 168, 369, 432, 617
HpyF3I	CTNAG	4 cut(s)	121, 310, 345, 368
Hsp92II	CATG	2 cut(s)	82, 485
HspAI	GCGC	3 cut(s)	139, 171, 363
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	293
LguI	GCTCTTC	3 cut(s)	29, 183, 353
LmnI	GCTCC	2 cut(s)	322, 451
LpnPI	CCDG	9 cut(s)	108, 119, 146, 297, 380, 408, 421, 462, 581
Lsp1109I	GCAGC	4 cut(s)	98, 160, 604, 605
LweI	GCATC	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	9 cut(s)	16, 19, 44, 47, 170, 173, 237, 294, 370
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	24, 96, 319
MluCI	AATT	3 cut(s)	143, 277, 461
MmeI	TCCRAC	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	394
MseI	TTAA	4 cut(s)	38, 63, 339, 495
MslI	CAYNNNNRTG	2 cut(s)	104, 416
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	2 cut(s)	395, 656
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	5 cut(s)	145, 168, 369, 432, 617
NaeI	GCCGGC	1 cut(s)	396
NdeII	GATC	1 cut(s)	293
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	2 cut(s)	82, 485
NlaIV	GGNNCC	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	416
PciI	ACATGT	1 cut(s)	481
PciSI	GCTCTTC	3 cut(s)	29, 183, 353
PdiI	GCCGGC	1 cut(s)	396
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	5 cut(s)	88, 161, 175, 595, 619
PscI	ACATGT	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	4 cut(s)	4, 43, 428, 517
PstI	CTGCAG	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	333, 476
RsaNI	GTAC	2 cut(s)	332, 475
RseI	CAYNNNNRTG	2 cut(s)	104, 416
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	3 cut(s)	29, 183, 353
SaqAI	TTAA	4 cut(s)	38, 63, 339, 495
SatI	GCNGC	5 cut(s)	87, 160, 174, 594, 618
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	4 cut(s)	4, 43, 428, 517
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	3 cut(s)	24, 96, 319
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	104, 416
Sse9I	AATT	3 cut(s)	143, 277, 461
SsiI	CCGC	3 cut(s)	46, 160, 426
SspI	AATATT	1 cut(s)	547
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	520
TaqI	TCGA	2 cut(s)	96, 292
TasI	AATT	3 cut(s)	143, 277, 461
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	4 cut(s)	38, 63, 339, 495
Tru9I	TTAA	4 cut(s)	38, 63, 339, 495
TscAI	CASTG	2 cut(s)	418, 423
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	86, 173, 593, 617
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	216, 294, 430
TspRI	CASTG	2 cut(s)	418, 423
Van91I	CCANNNNNTGG	1 cut(s)	455
XceI	RCATGY	1 cut(s)	485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.