Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

15846317 .. 15849444

Gene Structure 3128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAAGCAGCAGAGCTCGACGCAAAAATGGCGAGAAGAAACTCAGGGCTTCTCCTGGTGCGCCAATTGCTTGCCAATCGCAGCAACCTCTGCGCTGCTCTTCTTCCTCACCACAACCTCCCTTCTTATTCAATCCCAACCCTAACTTCATTCTCAAAGACCCAATCTTCACCTCCTCCCAATCCAAAACCCTTCTCCAATTTCTCAACCTTTCGATCCCTCTCCTCATCCTCAGGTGCTCCCTCCAACATTGTACTCGTTAAGTCTGAGGATGAGTTGAAGAGCGCATTGAGCAAAGCTAAAGATGGGTCTCTGCCGGCGATTTTTTACTTCACTGCAGTGTGGTGCGGGCCGTGCAGGTTCATAGCTCCAGTTATTGGGGAGTTGAGTGAGAAGTACCCACATGTGACGACATTTAAGATTGACATTGACGAGGAGGGCCTTGGAAGTGCATTGGGCAAGTTGAATATTTCCTCTGTGCCAACATTCCAGTTCTTTCAAAATGGGAAAATGGCAGCTGAAGTTGTTGGTGCTGATGCTGCACGCTTGAAAGATATTTTTGGAAAACTCTACAAGCCGGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

195

Amino Acids

21.09

Weight (kDa)

8.97

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	87 - 184	8e-18	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	2 cut(s)	255, 398
AfiI	CCNNNNNNNGG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	5 cut(s)	132, 280, 466, 500, 550
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	4 cut(s)	16, 299, 368, 518
AluI	AGCT	4 cut(s)	16, 299, 368, 518
Alw21I	GWGCWC	2 cut(s)	18, 241
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	350, 439
ApeKI	GCWGC	5 cut(s)	8, 81, 95, 515, 539
AspLEI	GCGC	3 cut(s)	63, 95, 287
AspS9I	GGNCC	2 cut(s)	350, 439
AsuHPI	GGTGA	2 cut(s)	101, 162
AxyI	CCTNAGG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	18, 241
BbvI	GCAGC	5 cut(s)	20, 82, 93, 526, 527
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	5 cut(s)	9, 82, 96, 516, 540
BlsI	GCNGC	5 cut(s)	10, 83, 97, 517, 541
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	350, 439
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	371, 490
Bse21I	CCTNAGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	227, 277
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	3 cut(s)	57, 246, 258
BseNI	ACTGG	2 cut(s)	371, 490
BseRI	GAGGAG	3 cut(s)	165, 214, 449
BseXI	GCAGC	5 cut(s)	20, 82, 93, 526, 527
BsgI	GTGCAG	2 cut(s)	376, 525
BshFI	GGCC	2 cut(s)	352, 441
BsiHKAI	GWGCWC	2 cut(s)	18, 241
BsiSI	CCGG	2 cut(s)	317, 578
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	352, 441
Bso31I	GGTCTC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	18, 241
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	352, 441
BspCNI	CTCAG	3 cut(s)	56, 245, 259
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	210
BspQI	GCTCTTC	2 cut(s)	105, 275
BspTNI	GGTCTC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	371, 490
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	56
Bst6I	CTCTTC	2 cut(s)	105, 275
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	4 cut(s)	72, 318, 350, 544
BstDEI	CTNAG	3 cut(s)	43, 232, 267
BstF5I	GGATG	2 cut(s)	227, 277
BstHHI	GCGC	3 cut(s)	63, 95, 287
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 67, 90, 291, 354, 539
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	5 cut(s)	20, 82, 93, 526, 527
Bsu36I	CCTNAGG	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	352, 441
BtsCI	GGATG	2 cut(s)	227, 277
BtsI	GCAGTG	2 cut(s)	333, 345
BtsIMutI	CAGTG	2 cut(s)	333, 345
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	4 cut(s)	72, 318, 350, 544
CfoI	GCGC	3 cut(s)	63, 95, 287
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	350, 439
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	254, 397
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	8 cut(s)	16, 49, 299, 352, 368, 441, 518, 577
CviKI_1	RGCY	8 cut(s)	16, 49, 299, 352, 368, 441, 518, 577
CviQI	GTAC	2 cut(s)	254, 397
DdeI	CTNAG	3 cut(s)	43, 232, 267
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	105, 275
EarI	CTCTTC	2 cut(s)	105, 275
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	540
Eco81I	CCTNAGG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	1 cut(s)	407
FaiI	YATR	2 cut(s)	365, 405
FalI	AAGNNNNNCTT	1 cut(s)	566
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	341
Fnu4HI	GCNGC	5 cut(s)	9, 82, 96, 516, 540
FokI	GGATG	2 cut(s)	214, 284
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	5 cut(s)	9, 82, 96, 516, 540
GlaI	GCGC	3 cut(s)	62, 94, 286
GluI	GCNGC	5 cut(s)	9, 82, 96, 516, 540
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	352, 441
HapII	CCGG	2 cut(s)	317, 578
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	63, 95, 287
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	3 cut(s)	61, 93, 285
HinP1I	GCGC	3 cut(s)	61, 93, 285
HpaII	CCGG	2 cut(s)	317, 578
HphI	GGTGA	2 cut(s)	101, 162
Hpy188I	TCNGA	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	132, 202
HpyCH4V	TGCA	4 cut(s)	338, 357, 452, 542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 67, 90, 291, 354, 539
HpyF3I	CTNAG	3 cut(s)	43, 232, 267
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	3 cut(s)	61, 93, 285
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	215
LguI	GCTCTTC	2 cut(s)	105, 275
LmnI	GCTCC	2 cut(s)	244, 373
LpnPI	CCDG	8 cut(s)	30, 41, 68, 219, 330, 343, 384, 503
Lsp1109I	GCAGC	5 cut(s)	20, 82, 93, 526, 527
LweI	GCATC	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	5 cut(s)	48, 92, 95, 159, 292
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	18, 241
MluCI	AATT	2 cut(s)	65, 199
MmeI	TCCRAC	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	316
MseI	TTAA	2 cut(s)	261, 417
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	2 cut(s)	317, 578
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	6 cut(s)	29, 67, 90, 291, 354, 539
NaeI	GCCGGC	1 cut(s)	318
NdeII	GATC	1 cut(s)	215
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	338
PciI	ACATGT	1 cut(s)	403
PciSI	GCTCTTC	2 cut(s)	105, 275
PdiI	GCCGGC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	10, 83, 97, 517, 541
PscI	ACATGT	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	350, 439
PstI	CTGCAG	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	255, 398
RsaNI	GTAC	2 cut(s)	254, 397
RseI	CAYNNNNRTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	18
SapI	GCTCTTC	2 cut(s)	105, 275
SaqAI	TTAA	2 cut(s)	261, 417
SatI	GCNGC	5 cut(s)	9, 82, 96, 516, 540
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	350, 439
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	18, 241
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	65, 199
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	1 cut(s)	469
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	442
TaqI	TCGA	2 cut(s)	18, 214
TasI	AATT	2 cut(s)	65, 199
TatI	WGTACW	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	261, 417
Tru9I	TTAA	2 cut(s)	261, 417
TscAI	CASTG	2 cut(s)	340, 345
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	5 cut(s)	8, 81, 95, 515, 539
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	138, 352
TspRI	CASTG	2 cut(s)	340, 345
Van91I	CCANNNNNTGG	1 cut(s)	377
XceI	RCATGY	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.