Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Forward (+)

24783400 .. 24786004

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22440.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGTCCTTATCGAAGGCTGAAACAGGCATATATAGTTGGTGCAACGTCGTCCATGACCAACACCCCATATTAGTTATGGACAATTGTGACTTAAAACTAGCTAGTTTGTCATCCTCGAAAATGATTTCTTTCTCATGTTTTTTTACAAGAAGCGATAGCAATTTTTCATTAAAATACAATAGCAAATCTAGAGATAAACAAATAAACATAATGAGTAATATCTTAACTGTTGTCACAAAACGGAAGACGAGACAGACCTATACTAAGGCATATATAATGTCATACTATTTAACTTTGGTCATTTGTGGGTACCTTCAAAAAGGACCAAAATCGGAATTTAACATAACACCTAGATTACCTTTTAAATCGAAATCAAAGAGCATCACCAACAACTTCTCTAAAAGAGGTTATTTTGGCTACTTTAACTTAAAAGGCAGTAATAACAATTCCAACATACTAATTATTTTAGTTTTTTGTACCGTGGCTCTTAAAATTATTATGTCACTTGTACGTTCATGCTCCAATCTTTGTGTTCGGTTCTCGAACATACGAAAGAACAACGAGATCTTAAGCCGAAATTGTTGTCCGATTAATAAAACGACCAAAAAATGGGTACTAACTAATTCAACATTAGTTATATGGAGAAATAAGTTGACAACATACCTAATTGGTTTTAATAATGGAAGACTAAATTTGCAGATGTGGGAGCTTTTACATACACGAGTTCAAATTGAAATCCGAGCAGAAACACATAATCAAAAATGCATTTCACACATAGGCTTCGTTTGGTACGTGAGGTGGGACGGAACACAATGGGACAAAAGTAGTTCTTTCTGCTCCGGCCTGCATACCAAACGTAGCACAAAAAACCTCATTTCCATCTCATTCCATCTCGTCCCTTTTTGTCCCGTCTACGTACCAACCACGCCCATCATGTCAACATGTTTTCACACGACAATATTTGCGTGGCAACGAATTTATCGCTCTCGACCACTCCCTAATATGGCTTATCAAACAATCTTTATGCGTTGTGTGGGCCTTATGGATGGCCTGTATACCTTCACCAACTGGCCCATTTACGTATTAATTGTTTTGGGCTATTCTTGTATTTTTGCCTTATGGACTAGGCCCAAGCAACATCACCGAATCGGCAATCGCAGCAAGTTCTGCGCAGCGCTTCTTCATCGTCACAACCTTCCTTCCAATTCTTTCCAAACCCTGGCTTCTTCAATCCCCATCGCACCATCTCCGCCGCCCACAGCATCTCCTTCCTCCTCCAAACCCTTCTCCAATTCCCTCCACCACTTCCCAAACGCTCACTTTCTGCAACTCCGACCTCTCTCCTCGCCCTCAGTTCAGGTGCCTCTAATATTGTTGTCAATCATTAAGTCGGAGGATCAATTTAGCACCGCAGTCAGCAAAGCTAAAGCCAAGCCTACATTCCAATTCTTTAAAGACGGGAAGAAGGTGGCTCAAGTTGTTGGTGCTAATGTTGCTCGCTTGAGAAACACTTTTGGAAGTTTGGGAAATACGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

513

Amino Acids

58.37

Weight (kDa)

10.11

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1171
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	2 cut(s)	309, 1360
AccB7I	CCANNNNNTGG	2 cut(s)	609, 1219
AccI	GTMKAC	2 cut(s)	912, 1055
AciI	CCGC	3 cut(s)	1250, 1253, 1410
AclWI	GGATC	1 cut(s)	1404
AcsI	RAATTY	3 cut(s)	335, 691, 975
AfaI	GTAC	6 cut(s)	311, 478, 510, 615, 791, 918
AfeI	AGCGCT	1 cut(s)	1176
AfiI	CCNNNNNNNGG	3 cut(s)	609, 1003, 1219
AflII	CTTAAG	1 cut(s)	568
AflIII	ACRYGT	1 cut(s)	941
AgsI	TTSAA	5 cut(s)	317, 627, 728, 734, 1230
AjnI	CCWGG	1 cut(s)	1218
AjuI	GAANNNNNNNTTGG	2 cut(s)	1424, 1456
AluBI	AGCT	3 cut(s)	101, 709, 1424
AluI	AGCT	3 cut(s)	101, 709, 1424
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	1404
Aor51HI	AGCGCT	1 cut(s)	1176
AoxI	GGCC	5 cut(s)	841, 1036, 1048, 1070, 1127
ApeKI	GCWGC	2 cut(s)	1158, 1172
ApoI	RAATTY	3 cut(s)	335, 691, 975
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
AseI	ATTAAT	2 cut(s)	591, 1085
Asp718I	GGTACC	1 cut(s)	309
AspLEI	GCGC	2 cut(s)	1172, 1177
AspS9I	GGNCC	4 cut(s)	323, 1036, 1071, 1128
AsuHPI	GGTGA	3 cut(s)	376, 1054, 1133
AvaII	GGWCC	1 cut(s)	323
BanI	GGYRCC	2 cut(s)	309, 1360
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	2 cut(s)	251, 691
BbvI	GCAGC	2 cut(s)	1170, 1184
BccI	CCATC	6 cut(s)	887, 897, 938, 1040, 1244, 1252
BciT130I	CCWGG	1 cut(s)	1220
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	6 cut(s)	98, 102, 189, 351, 1125, 1537
BfoI	RGCGCY	1 cut(s)	1178
BfrI	CTTAAG	1 cut(s)	568
BglII	AGATCT	1 cut(s)	564
BisI	GCNGC	3 cut(s)	1159, 1173, 1253
BlsI	GCNGC	3 cut(s)	1160, 1174, 1254
Bme1390I	CCNGG	1 cut(s)	1220
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	4 cut(s)	323, 1036, 1071, 1128
BmiI	GGNNCC	2 cut(s)	311, 1362
BmrFI	CCNGG	1 cut(s)	1220
BmsI	GCATC	2 cut(s)	390, 1271
BpiI	GAAGAC	2 cut(s)	251, 691
BpuEI	CTTGAG	2 cut(s)	1458, 1522
BsaAI	YACGTR	3 cut(s)	793, 916, 1081
BsaJI	CCNNGG	2 cut(s)	480, 1218
BsaXI	ACNNNNNCTCC	2 cut(s)	1249, 1279
Bsc4I	CCNNNNNNNGG	3 cut(s)	609, 1003, 1219
Bse1I	ACTGG	1 cut(s)	1073
BseBI	CCWGG	1 cut(s)	1220
BseDI	CCNNGG	2 cut(s)	480, 1218
BseGI	GGATG	2 cut(s)	110, 1051
BseLI	CCNNNNNNNGG	3 cut(s)	609, 1003, 1219
BseMII	CTCAG	1 cut(s)	1365
BseNI	ACTGG	1 cut(s)	1073
BseRI	GAGGAG	2 cut(s)	1264, 1333
BseXI	GCAGC	2 cut(s)	1170, 1184
BshFI	GGCC	5 cut(s)	843, 1038, 1050, 1072, 1129
BshNI	GGYRCC	2 cut(s)	309, 1360
BsiSI	CCGG	1 cut(s)	840
BslFI	GGGAC	4 cut(s)	815, 830, 881, 891
BslI	CCNNNNNNNGG	3 cut(s)	609, 1003, 1219
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	4 cut(s)	815, 830, 881, 891
BsnI	GGCC	5 cut(s)	843, 1038, 1050, 1072, 1129
Bsp143I	GATC	2 cut(s)	564, 1396
BspACI	CCGC	3 cut(s)	1250, 1253, 1410
BspANI	GGCC	5 cut(s)	843, 1038, 1050, 1072, 1129
BspCNI	CTCAG	1 cut(s)	1364
BspLI	GGNNCC	2 cut(s)	311, 1362
BspPI	GGATC	1 cut(s)	1404
BspT107I	GGYRCC	2 cut(s)	309, 1360
BspTI	CTTAAG	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	1073
BssECI	CCNNGG	2 cut(s)	480, 1218
BssMI	GATC	2 cut(s)	564, 1396
BssNAI	GTATAC	1 cut(s)	1056
BssSI	CACGAG	1 cut(s)	720
Bst1107I	GTATAC	1 cut(s)	1056
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	1220
Bst4CI	ACNGT	2 cut(s)	229, 481
BstAFI	CTTAAG	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	1167
BstBAI	YACGTR	3 cut(s)	793, 916, 1081
BstC8I	GCNNGC	2 cut(s)	845, 1498
BstDEI	CTNAG	2 cut(s)	264, 1351
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	110, 1051
BstH2I	RGCGCY	1 cut(s)	1178
BstHHI	GCGC	2 cut(s)	1172, 1177
BstKTI	GATC	2 cut(s)	567, 1399
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	2 cut(s)	564, 1396
BstMWI	GCNNNNNNNGC	3 cut(s)	1158, 1167, 1493
BstNI	CCWGG	1 cut(s)	1220
BstNSI	RCATGY	1 cut(s)	945
BstSCI	CCNGG	1 cut(s)	1218
BstSNI	TACGTA	2 cut(s)	916, 1081
BstV1I	GCAGC	2 cut(s)	1170, 1184
BstV2I	GAAGAC	2 cut(s)	251, 691
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BstZ17I	GTATAC	1 cut(s)	1056
BsuRI	GGCC	5 cut(s)	843, 1038, 1050, 1072, 1129
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	1222
BtsCI	GGATG	2 cut(s)	110, 1051
Cac8I	GCNNGC	2 cut(s)	845, 1498
CfoI	GCGC	2 cut(s)	1172, 1177
Cfr13I	GGNCC	4 cut(s)	323, 1036, 1071, 1128
Csp6I	GTAC	6 cut(s)	310, 477, 509, 614, 790, 917
CviAII	CATG	5 cut(s)	53, 135, 516, 934, 942
CviQI	GTAC	6 cut(s)	310, 477, 509, 614, 790, 917
DdeI	CTNAG	2 cut(s)	264, 1351
DpnI	GATC	2 cut(s)	566, 1398
DpnII	GATC	2 cut(s)	564, 1396
DraI	TTTAAA	2 cut(s)	364, 1453
EciI	GGCGGA	1 cut(s)	1239
Eco105I	TACGTA	2 cut(s)	916, 1081
Eco47I	GGWCC	1 cut(s)	323
Eco47III	AGCGCT	1 cut(s)	1176
EcoRII	CCWGG	1 cut(s)	1218
EcoT22I	ATGCAT	1 cut(s)	767
FaeI	CATG	5 cut(s)	56, 138, 519, 937, 945
FalI	AAGNNNNNCTT	2 cut(s)	814, 846
FaqI	GGGAC	4 cut(s)	815, 830, 881, 891
FatI	CATG	5 cut(s)	52, 134, 515, 933, 941
FblI	GTMKAC	2 cut(s)	912, 1055
Fnu4HI	GCNGC	3 cut(s)	1159, 1173, 1253
FokI	GGATG	2 cut(s)	97, 1058
Fsp4HI	GCNGC	3 cut(s)	1159, 1173, 1253
FspBI	CTAG	6 cut(s)	98, 102, 189, 351, 1125, 1537
FspI	TGCGCA	1 cut(s)	1171
GlaI	GCGC	2 cut(s)	1171, 1176
GluI	GCNGC	3 cut(s)	1159, 1173, 1253
HaeII	RGCGCY	1 cut(s)	1178
HaeIII	GGCC	5 cut(s)	843, 1038, 1050, 1072, 1129
HapII	CCGG	1 cut(s)	840
HhaI	GCGC	2 cut(s)	1172, 1177
Hin1II	CATG	5 cut(s)	56, 138, 519, 937, 945
Hin6I	GCGC	2 cut(s)	1170, 1175
HinP1I	GCGC	2 cut(s)	1170, 1175
HincII	GTYRAC	2 cut(s)	654, 939
HindII	GTYRAC	2 cut(s)	654, 939
HinfI	GANTC	1 cut(s)	1146
HpaII	CCGG	1 cut(s)	840
HphI	GGTGA	3 cut(s)	376, 1054, 1133
Hpy166II	GTNNAC	4 cut(s)	654, 913, 939, 1056
Hpy188I	TCNGA	5 cut(s)	334, 588, 740, 1334, 1393
Hpy188III	TCNNGA	3 cut(s)	189, 541, 987
Hpy8I	GTNNAC	4 cut(s)	654, 913, 939, 1056
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	8 cut(s)	7, 323, 1069, 1205, 1209, 1278, 1294, 1459
HpyCH4III	ACNGT	2 cut(s)	229, 481
HpyCH4IV	ACGT	6 cut(s)	45, 511, 792, 856, 915, 1080
HpyCH4V	TGCA	5 cut(s)	42, 697, 765, 847, 1327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1158, 1167, 1493
HpyF3I	CTNAG	2 cut(s)	264, 1351
HpySE526I	ACGT	6 cut(s)	45, 511, 792, 856, 915, 1080
Hsp92II	CATG	5 cut(s)	56, 138, 519, 937, 945
HspAI	GCGC	2 cut(s)	1170, 1175
KpnI	GGTACC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	564, 1396
LmnI	GCTCC	3 cut(s)	524, 706, 842
LpnPI	CCDG	8 cut(s)	9, 853, 857, 1054, 1064, 1205, 1232, 1343
Lsp1109I	GCAGC	2 cut(s)	1170, 1184
LweI	GCATC	2 cut(s)	390, 1271
MaeI	CTAG	6 cut(s)	98, 102, 189, 351, 1125, 1537
MaeII	ACGT	6 cut(s)	45, 511, 792, 856, 915, 1080
MaeIII	GTNAC	4 cut(s)	86, 232, 501, 1187
MalI	GATC	2 cut(s)	566, 1398
MboI	GATC	2 cut(s)	564, 1396
MboII	GAAGA	5 cut(s)	256, 696, 1172, 1218, 1474
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	1 cut(s)	564
MmeI	TCCRAC	3 cut(s)	474, 1357, 1371
Mph1103I	ATGCAT	1 cut(s)	767
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	1 cut(s)	840
MspR9I	CCNGG	1 cut(s)	1220
MteI	GCGCNGCGC	1 cut(s)	1173
MunI	CAATTG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	1220
MwoI	GCNNNNNNNGC	3 cut(s)	1158, 1167, 1493
NdeII	GATC	2 cut(s)	564, 1396
NlaIII	CATG	5 cut(s)	56, 138, 519, 937, 945
NlaIV	GGNNCC	2 cut(s)	311, 1362
NmuCI	GTSAC	4 cut(s)	86, 232, 501, 1187
NsbI	TGCGCA	1 cut(s)	1171
NsiI	ATGCAT	1 cut(s)	767
NspI	RCATGY	1 cut(s)	945
PciI	ACATGT	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PfeI	GAWTC	1 cut(s)	1146
PflMI	CCANNNNNTGG	2 cut(s)	609, 1219
PkrI	GCNGC	3 cut(s)	1160, 1174, 1254
Ppu21I	YACGTR	3 cut(s)	793, 916, 1081
PscI	ACATGT	1 cut(s)	941
PshBI	ATTAAT	2 cut(s)	591, 1085
Psp6I	CCWGG	1 cut(s)	1218
PspGI	CCWGG	1 cut(s)	1218
PspN4I	GGNNCC	2 cut(s)	311, 1362
PspPI	GGNCC	4 cut(s)	323, 1036, 1071, 1128
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	6 cut(s)	311, 478, 510, 615, 791, 918
RsaNI	GTAC	6 cut(s)	310, 477, 509, 614, 790, 917
SatI	GCNGC	3 cut(s)	1159, 1173, 1253
Sau3AI	GATC	2 cut(s)	564, 1396
Sau96I	GGNCC	4 cut(s)	323, 1036, 1071, 1128
ScrFI	CCNGG	1 cut(s)	1220
SfaNI	GCATC	2 cut(s)	390, 1271
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	3 cut(s)	568, 1473, 1501
SmoI	CTYRAG	3 cut(s)	568, 1473, 1501
SnaBI	TACGTA	2 cut(s)	916, 1081
SsiI	CCGC	3 cut(s)	1250, 1253, 1410
SspI	AATATT	2 cut(s)	960, 1371
SspMI	CTAG	6 cut(s)	98, 102, 189, 351, 1125, 1537
StyD4I	CCNGG	1 cut(s)	1218
TaaI	ACNGT	2 cut(s)	229, 481
TaiI	ACGT	6 cut(s)	48, 514, 795, 859, 918, 1083
TaqI	TCGA	5 cut(s)	11, 116, 368, 542, 988
TauI	GCSGC	1 cut(s)	1255
TfiI	GAWTC	1 cut(s)	1146
TseFI	GTSAC	4 cut(s)	86, 232, 501, 1187
TseI	GCWGC	2 cut(s)	1158, 1172
Tsp45I	GTSAC	4 cut(s)	86, 232, 501, 1187
TspDTI	ATGAA	3 cut(s)	156, 504, 1172
TspGWI	ACGGA	2 cut(s)	256, 819
Van91I	CCANNNNNTGG	2 cut(s)	609, 1219
Vha464I	CTTAAG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	323
VspI	ATTAAT	2 cut(s)	591, 1085
XapI	RAATTY	3 cut(s)	335, 691, 975
XbaI	TCTAGA	1 cut(s)	188
XceI	RCATGY	1 cut(s)	945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	2 cut(s)	912, 1055
XspI	CTAG	6 cut(s)	98, 102, 189, 351, 1125, 1537
Zsp2I	ATGCAT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.