Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

15963299 .. 15966450

Gene Structure 3152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG152100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGAGAAGAAACTCAGGGCTTCTCCTGGTGCGCCAATTGCTTGCCAATCGCAGCAACCTCTGCGCTGCTCTTCTCCCTCACCACAACCTCCCTTCTTATTCAATCCCAACCCTAACTTCATTCTCAAAGACCCAATCTTCACCTCCTCCCAATCCAAAACCCTTCTCCAATTTCTCAACCTTTCGATCCCTCTCCTCATCCTCAGGTGCTCCCTCCAACATTGTACTCGTTAAGTCTGAGGATGAGTTGAAGAGCGCATTGAGCAAAGCTAAAGATGGGTCTCTGCCGGCGATTTTTTACTTCACTGCAGTGTGGTGCGGGCCGTGCAGGTTCATAGCTCCAGTTATTGGGGAGTTGAGTGAGAAGTACCCACATGTGACGACATTTAAGATTGACATTGACGAGGTGTGTGTAGTTGTGTATTGTTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

145

Amino Acids

15.83

Weight (kDa)

9.08

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	78 - 137	3.1e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	350
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	228, 371
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	105, 253, 433
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	2 cut(s)	272, 341
AluI	AGCT	2 cut(s)	272, 341
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	54, 68
AspLEI	GCGC	3 cut(s)	36, 68, 260
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	74, 135
AxyI	CCTNAGG	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	55, 66
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	55, 69
BlsI	GCNGC	2 cut(s)	56, 70
Bme1390I	CCNGG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	344
Bse21I	CCTNAGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	200, 250
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	3 cut(s)	30, 219, 231
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	138, 187
BseXI	GCAGC	2 cut(s)	55, 66
BsgI	GTGCAG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	188
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	3 cut(s)	29, 218, 232
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	183
BspQI	GCTCTTC	2 cut(s)	78, 248
BspTNI	GGTCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	289
BssMI	GATC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	78, 248
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	45, 291, 323
BstDEI	CTNAG	3 cut(s)	16, 205, 240
BstF5I	GGATG	2 cut(s)	200, 250
BstHHI	GCGC	3 cut(s)	36, 68, 260
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 63, 264, 327
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	55, 66
Bsu36I	CCTNAGG	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	200, 250
BtsI	GCAGTG	2 cut(s)	306, 318
BtsIMutI	CAGTG	2 cut(s)	306, 318
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	45, 291, 323
CfoI	GCGC	3 cut(s)	36, 68, 260
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	227, 370
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	4 cut(s)	22, 272, 325, 341
CviKI_1	RGCY	4 cut(s)	22, 272, 325, 341
CviQI	GTAC	2 cut(s)	227, 370
DdeI	CTNAG	3 cut(s)	16, 205, 240
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	78, 248
EarI	CTCTTC	2 cut(s)	78, 248
Eco31I	GGTCTC	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	380
FaiI	YATR	2 cut(s)	338, 378
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	55, 69
FokI	GGATG	2 cut(s)	187, 257
Fsp4HI	GCNGC	2 cut(s)	55, 69
GlaI	GCGC	3 cut(s)	35, 67, 259
GluI	GCNGC	2 cut(s)	55, 69
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	3 cut(s)	36, 68, 260
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	3 cut(s)	34, 66, 258
HinP1I	GCGC	3 cut(s)	34, 66, 258
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	74, 135
Hpy188I	TCNGA	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	105, 175
HpyCH4V	TGCA	2 cut(s)	311, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 63, 264, 327
HpyF3I	CTNAG	3 cut(s)	16, 205, 240
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	3 cut(s)	34, 66, 258
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	188
LguI	GCTCTTC	2 cut(s)	78, 248
LmnI	GCTCC	2 cut(s)	217, 346
LpnPI	CCDG	7 cut(s)	3, 14, 41, 192, 303, 316, 357
Lsp1109I	GCAGC	2 cut(s)	55, 66
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	4 cut(s)	21, 65, 132, 265
MfeI	CAATTG	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	38, 172, 433
MmeI	TCCRAC	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	289
MseI	TTAA	3 cut(s)	234, 390, 436
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	40, 63, 264, 327
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	1 cut(s)	188
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	380
OliI	CACNNNNGTG	1 cut(s)	311
PciI	ACATGT	1 cut(s)	376
PciSI	GCTCTTC	2 cut(s)	78, 248
PdiI	GCCGGC	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	56, 70
PscI	ACATGT	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	228, 371
RsaNI	GTAC	2 cut(s)	227, 370
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	2 cut(s)	78, 248
SaqAI	TTAA	3 cut(s)	234, 390, 436
SatI	GCNGC	2 cut(s)	55, 69
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	9 cut(s)	63, 93, 148, 185, 211, 274, 335, 343, 411
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	38, 172, 433
SsiI	CCGC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	27
TaqI	TCGA	1 cut(s)	187
TasI	AATT	3 cut(s)	38, 172, 433
TatI	WGTACW	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	234, 390, 436
Tru9I	TTAA	3 cut(s)	234, 390, 436
TscAI	CASTG	2 cut(s)	313, 318
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	54, 68
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	111, 325
TspRI	CASTG	2 cut(s)	313, 318
Van91I	CCANNNNNTGG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.