MD10G1322700.v1.1

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0004791
Physical Location & Seq
Forward (+)
40410600 .. 40413247
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1322700.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGCTACTTCCACACCCAAATCACCCGTCTTGCTCGATTCCCCTCATTTTCTGCAACACCAAAGACGGCTGTCCTCAGCCCCCGCCCCGTCCAAGTCCCCGTCCCCGTCTAGAGCCCCAGGCAACCCCTTTCTCTTTCTCTTCCAATTTCTGCGATCTGATGATGGTTTTGTTGTTGCCACTGAGACCGCTGTGTATTTTTATAGCAATTAAATTTCCAAGTCCCGCAGACATCGTCGTCTTGTGGAAAGAGGATGAAGTAGAGAGAGCTATACAAAAAGTTAAAGATGGACAATTGGCAGCAGTTTTCTACTTTGCTATGCCGACGTCTTATAATTCCAATCATTTTGGATCTCCAACGGTTCGAAAAATGAGGGAGCAAATCCCACATGTAACAGTGTACAAGTATGTGTTTACTTCTAAGGGCTACTCGCCGGATATGAATATTACCACTACGCCAACATTCCGTTTCTATCAAAATGGGGAAATGGTAGATGAGATTTTTGCCAATCCCTATCAAAATAGGAGGGCAGATGAGATTCCCAAACTCGTGATCGAAACTTGTGAAAAACTGTACAGGCATGTCATCCGGGTTGAAAGCACTCAACCTATGAGCTCACCTGGGAAGGGGAAGGGGAAAAGGAAGAGGAGAACACATCAACAACTTGTCGTACAAGCTAAGACGGACAAAAATGAAAATGACAAAGTAGTTTCTTTAGGAGTGGGGAAGGTGGGAGATGCGCTATTGTCACAGAGGAGAGGTGCTGCGACATCATCAGAACTTAGTGATCGCCCTATTGAAGCGGCTGATAGTATTAGCAGTGCACCTTCACTTGATGAAGCAGTGGAGGCTGTTGCATCAACTTACCCTGGGCCGCTTTACAAGGGGTGTCTGCGGTGGTATGCAAAAGGGGTGTTTAAAGCCAACCCTGAGAAGATAGCAATGTTCCTAAAGGTTGCGAGAGGTGACAAGGTTGCGAGATATGATAAGGTTGCTTGGCTGCTAAGGGACGTGGCCGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_16 TPR_8 Thioredoxin

Protein Analysis

342

Amino Acids

38.29

Weight (kDa)

9.24

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AasI GACNNNNNNGTC 1 cut(s) 236
AatII GACGTC 1 cut(s) 329
AciI CCGC 6 cut(s) 83, 188, 225, 803, 875, 895
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 1014
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 326
AfaI GTAC 3 cut(s) 401, 575, 672
AfiI CCNNNNNNNGG 1 cut(s) 626
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 2 cut(s) 596, 800
AjiI CACGTC 1 cut(s) 1012
AjnI CCWGG 3 cut(s) 117, 619, 868
AluBI AGCT 3 cut(s) 269, 615, 677
AluI AGCT 3 cut(s) 269, 615, 677
Alw21I GWGCWC 2 cut(s) 617, 826
Alw26I GTCTC 1 cut(s) 178
Alw44I GTGCAC 1 cut(s) 822
AlwI GGATC 1 cut(s) 358
AoxI GGCC 2 cut(s) 872, 1014
ApaLI GTGCAC 1 cut(s) 822
ApeKI GCWGC 3 cut(s) 299, 764, 1000
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 1 cut(s) 872
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 3 cut(s) 14, 609, 977
AsuII TTCGAA 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 826
BanII GRGCYC 2 cut(s) 117, 617
BauI CACGAG 1 cut(s) 548
Bbv12I GWGCWC 2 cut(s) 617, 826
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 3 cut(s) 311, 751, 987
BccI CCATC 2 cut(s) 157, 281
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 3 cut(s) 119, 621, 870
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 110
BisI GCNGC 5 cut(s) 300, 765, 804, 875, 1001
BlsI GCNGC 5 cut(s) 301, 766, 805, 876, 1002
Bme1390I CCNGG 4 cut(s) 119, 590, 621, 870
BmgBI CACGTC 1 cut(s) 1012
BmgT120I GGNCC 1 cut(s) 872
BmrFI CCNGG 4 cut(s) 119, 590, 621, 870
BmsI GCATC 2 cut(s) 727, 866
BoxI GACNNNNGTC 1 cut(s) 69
Bpu10I CCTNAGC 2 cut(s) 75, 1004
Bpu14I TTCGAA 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 5 cut(s) 117, 620, 868, 869, 1017
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 3 cut(s) 119, 621, 870
BseDI CCNNGG 5 cut(s) 117, 620, 868, 869, 1017
BseGI GGATG 2 cut(s) 259, 585
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 3 cut(s) 89, 173, 921
BseRI GAGGAG 2 cut(s) 661, 769
BseSI GKGCMC 1 cut(s) 826
BseXI GCAGC 3 cut(s) 311, 751, 987
BshFI GGCC 2 cut(s) 874, 1016
BsiHKAI GWGCWC 2 cut(s) 617, 826
BsiSI CCGG 2 cut(s) 434, 589
BslFI GGGAC 4 cut(s) 81, 87, 207, 1022
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 4 cut(s) 81, 87, 207, 1022
BsnI GGCC 2 cut(s) 874, 1016
Bso31I GGTCTC 1 cut(s) 178
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 117, 617, 826
Bsp1407I TGTACA 2 cut(s) 399, 573
Bsp143I GATC 4 cut(s) 154, 350, 552, 787
BspACI CCGC 6 cut(s) 83, 188, 225, 803, 875, 895
BspANI GGCC 2 cut(s) 874, 1016
BspCNI CTCAG 3 cut(s) 88, 174, 922
BspPI GGATC 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 948
BsrGI TGTACA 2 cut(s) 399, 573
BssECI CCNNGG 5 cut(s) 117, 620, 868, 869, 1017
BssMI GATC 4 cut(s) 154, 350, 552, 787
BssNI GRCGYC 1 cut(s) 326
BssSI CACGAG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 548
Bst2UI CCWGG 3 cut(s) 119, 621, 870
Bst4CI ACNGT 3 cut(s) 361, 397, 573
Bst6I CTCTTC 2 cut(s) 145, 638
BstACI GRCGYC 1 cut(s) 326
BstAUI TGTACA 2 cut(s) 399, 573
BstBI TTCGAA 1 cut(s) 364
BstDEI CTNAG 7 cut(s) 75, 182, 420, 678, 782, 930, 1004
BstF5I GGATG 2 cut(s) 259, 585
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 4 cut(s) 157, 353, 555, 790
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 4 cut(s) 154, 350, 552, 787
BstMWI GCNNNNNNNGC 1 cut(s) 848
BstNI CCWGG 3 cut(s) 119, 621, 870
BstNSI RCATGY 2 cut(s) 392, 584
BstPAI GACNNNNGTC 1 cut(s) 69
BstSCI CCNGG 4 cut(s) 117, 588, 619, 868
BstSLI GKGCMC 1 cut(s) 826
BstV1I GCAGC 3 cut(s) 311, 751, 987
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 2 cut(s) 874, 1016
BtrI CACGTC 1 cut(s) 1012
BtsCI GGATG 2 cut(s) 259, 585
BtsI GCAGTG 2 cut(s) 826, 849
BtsIMutI CAGTG 4 cut(s) 179, 402, 826, 849
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 872
Csp6I GTAC 3 cut(s) 400, 574, 671
CviAII CATG 2 cut(s) 389, 581
CviQI GTAC 3 cut(s) 400, 574, 671
DdeI CTNAG 7 cut(s) 75, 182, 420, 678, 782, 930, 1004
DpnI GATC 4 cut(s) 156, 352, 554, 789
DpnII GATC 4 cut(s) 154, 350, 552, 787
DraI TTTAAA 1 cut(s) 919
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 1014
Eam1104I CTCTTC 2 cut(s) 145, 638
EarI CTCTTC 2 cut(s) 145, 638
Ecl136II GAGCTC 1 cut(s) 615
Eco24I GRGCYC 2 cut(s) 117, 617
Eco31I GGTCTC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 615
EcoRII CCWGG 3 cut(s) 117, 619, 868
EcoT38I GRGCYC 2 cut(s) 117, 617
FaeI CATG 2 cut(s) 392, 584
FaqI GGGAC 4 cut(s) 81, 87, 207, 1022
FatI CATG 2 cut(s) 388, 580
FauI CCCGC 2 cut(s) 90, 232
Fnu4HI GCNGC 5 cut(s) 300, 765, 804, 875, 1001
FokI GGATG 2 cut(s) 266, 572
FriOI GRGCYC 2 cut(s) 117, 617
Fsp4HI GCNGC 5 cut(s) 300, 765, 804, 875, 1001
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 741
GluI GCNGC 5 cut(s) 300, 765, 804, 875, 1001
HaeIII GGCC 2 cut(s) 874, 1016
HapII CCGG 2 cut(s) 434, 589
HhaI GCGC 1 cut(s) 742
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 2 cut(s) 392, 584
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HinfI GANTC 2 cut(s) 37, 538
HpaII CCGG 2 cut(s) 434, 589
HphI GGTGA 3 cut(s) 14, 609, 977
Hpy166II GTNNAC 3 cut(s) 400, 414, 824
Hpy188I TCNGA 2 cut(s) 159, 778
Hpy188III TCNNGA 2 cut(s) 110, 550
Hpy8I GTNNAC 3 cut(s) 400, 414, 824
Hpy99I CGWCG 2 cut(s) 239, 328
HpyAV CCTTC 4 cut(s) 619, 625, 721, 837
HpyCH4III ACNGT 3 cut(s) 361, 397, 573
HpyCH4IV ACGT 2 cut(s) 326, 1011
HpyCH4V TGCA 4 cut(s) 54, 824, 857, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 848
HpyF3I CTNAG 7 cut(s) 75, 182, 420, 678, 782, 930, 1004
HpySE526I ACGT 2 cut(s) 326, 1011
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 2 cut(s) 392, 584
HspAI GCGC 1 cut(s) 740
Kzo9I GATC 4 cut(s) 154, 350, 552, 787
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 3 cut(s) 311, 751, 987
LweI GCATC 2 cut(s) 727, 866
MaeI CTAG 1 cut(s) 110
MaeII ACGT 2 cut(s) 326, 1011
MaeIII GTNAC 3 cut(s) 391, 747, 965
MalI GATC 4 cut(s) 156, 352, 554, 789
MboI GATC 4 cut(s) 154, 350, 552, 787
MboII GAAGA 3 cut(s) 132, 655, 946
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 3 cut(s) 117, 617, 826
MluCI AATT 5 cut(s) 145, 207, 212, 293, 334
MmeI TCCRAC 1 cut(s) 380
MseI TTAA 4 cut(s) 210, 282, 918, 1024
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 2 cut(s) 434, 589
MspR9I CCNGG 4 cut(s) 119, 590, 621, 870
MunI CAATTG 1 cut(s) 293
MvaI CCWGG 3 cut(s) 119, 621, 870
MwoI GCNNNNNNNGC 1 cut(s) 848
NciI CCSGG 1 cut(s) 590
NdeII GATC 4 cut(s) 154, 350, 552, 787
NlaIII CATG 2 cut(s) 392, 584
NmuCI GTSAC 2 cut(s) 747, 965
NspI RCATGY 2 cut(s) 392, 584
NspV TTCGAA 1 cut(s) 364
PasI CCCWGGG 1 cut(s) 869
PciI ACATGT 1 cut(s) 388
PfeI GAWTC 2 cut(s) 37, 538
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 5 cut(s) 301, 766, 805, 876, 1002
PscI ACATGT 1 cut(s) 388
PshAI GACNNNNGTC 1 cut(s) 69
PsiI TTATAA 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 617
Psp6I CCWGG 3 cut(s) 117, 619, 868
PspGI CCWGG 3 cut(s) 117, 619, 868
PspPI GGNCC 1 cut(s) 872
PsuI RGATCY 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 3 cut(s) 401, 575, 672
RsaNI GTAC 3 cut(s) 400, 574, 671
SacI GAGCTC 1 cut(s) 617
SaqAI TTAA 4 cut(s) 210, 282, 918, 1024
SatI GCNGC 5 cut(s) 300, 765, 804, 875, 1001
Sau3AI GATC 4 cut(s) 154, 350, 552, 787
Sau96I GGNCC 1 cut(s) 872
ScrFI CCNGG 4 cut(s) 119, 590, 621, 870
SduI GDGCHC 3 cut(s) 117, 617, 826
SfaNI GCATC 2 cut(s) 727, 866
SfuI TTCGAA 1 cut(s) 364
Sse9I AATT 5 cut(s) 145, 207, 212, 293, 334
SsiI CCGC 6 cut(s) 83, 188, 225, 803, 875, 895
SspI AATATT 1 cut(s) 445
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 617
StyD4I CCNGG 4 cut(s) 117, 588, 619, 868
TaaI ACNGT 3 cut(s) 361, 397, 573
TaiI ACGT 2 cut(s) 329, 1014
TaqI TCGA 3 cut(s) 35, 364, 555
TasI AATT 5 cut(s) 145, 207, 212, 293, 334
TatI WGTACW 2 cut(s) 399, 573
TauI GCSGC 2 cut(s) 806, 877
TfiI GAWTC 2 cut(s) 37, 538
Tru1I TTAA 4 cut(s) 210, 282, 918, 1024
Tru9I TTAA 4 cut(s) 210, 282, 918, 1024
TscAI CASTG 4 cut(s) 186, 402, 826, 849
TseFI GTSAC 2 cut(s) 747, 965
TseI GCWGC 3 cut(s) 299, 764, 1000
Tsp45I GTSAC 2 cut(s) 747, 965
TspDTI ATGAA 4 cut(s) 270, 455, 708, 852
TspGWI ACGGA 2 cut(s) 455, 698
TspRI CASTG 4 cut(s) 186, 402, 826, 849
Tth111I GACNNNGTC 1 cut(s) 233
VneI GTGCAC 1 cut(s) 822
XapI RAATTY 1 cut(s) 212
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 2 cut(s) 392, 584
XspI CTAG 1 cut(s) 110
ZraI GACGTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.