Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

11957375 .. 11960271

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1134000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAAGGAATTCAGGTGTAGCCATGGCACGGCAATTGCTCGGCAATCACAGCAAGTTCTGCACCGCGCTTCTTCATCATTACAGCCTTCCTTCCAGTTCTTTCCAAACCCTGGCTTCTTCAATCCCCACCTCACCACCTCCACCGCCCACAGCAACCCCTTTCACCTCCAATTCCCTCCACCGCTCCCCAAACCCTCGCTTTCTGCAGCTCCAACCTCTCTCCTCGCCCTCAGGTTCCTCAAACATTGTTGTCATTAAGTCAGAGGATGAATACAACAGCACAATCAGCAAAGCTAAGGACGGAGCTGAGCCAGCACTTTTCTACTTCACTGCAGTCTGGTGCGGGCCTTGCAGGTTCATATCTCCAGTCATTGGAGAGTTGAGTGAGCAATACCCACATGCAACAACATATAAGATTGACATCGATGAGGAAGGACTTACAAACACTTTGGGCAAGTTGAATATTTCTGCTGTGCCTACATTCCATCTCTTTCAAGATGGGAAGAAGGTGGCTGAAGTTGTTGGTGCTGATGTTGCTCGCTTGAGAGACACTTTTGGAAAACTCTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

192

Amino Acids

20.75

Weight (kDa)

8.43

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	85 - 181	6.7e-19	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccB7I	CCANNNNNTGG	2 cut(s)	112, 374
AccBSI	CCGCTC	1 cut(s)	186
AccII	CGCG	1 cut(s)	68
AciI	CCGC	4 cut(s)	66, 146, 184, 345
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	537
AfiI	CCNNNNNNNGG	3 cut(s)	30, 112, 374
AgsI	TTSAA	3 cut(s)	123, 463, 497
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	3 cut(s)	211, 296, 308
AluI	AGCT	3 cut(s)	211, 296, 308
Alw26I	GTCTC	1 cut(s)	543
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	126, 157
AxyI	CCTNAGG	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	494, 495
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	206, 333
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	565
Bsa29I	ATCGAT	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	24, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 112, 374
Bse1I	ACTGG	2 cut(s)	96, 368
Bse21I	CCTNAGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	113
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	24, 111
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	3 cut(s)	30, 112, 374
BseMII	CTCAG	2 cut(s)	246, 300
BseNI	ACTGG	2 cut(s)	96, 368
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	426
BslI	CCNNNNNNNGG	3 cut(s)	30, 112, 374
BsmAI	GTCTC	1 cut(s)	543
BsnI	GGCC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	4 cut(s)	66, 146, 184, 345
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	245, 301
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	2 cut(s)	210, 337
BspMI	ACCTGC	1 cut(s)	345
BsrBI	CCGCTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	96, 368
BssECI	CCNNGG	2 cut(s)	24, 111
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	315, 347, 541
BstDEI	CTNAG	3 cut(s)	232, 297, 309
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 60, 288, 314, 351, 536
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	206, 333
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	220
Bsu15I	ATCGAT	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	349
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	315, 347, 541
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	426
CviAII	CATG	2 cut(s)	25, 401
CviJI	RGCY	9 cut(s)	23, 87, 116, 211, 296, 308, 313, 349, 515
CviKI_1	RGCY	9 cut(s)	23, 87, 116, 211, 296, 308, 313, 349, 515
DdeI	CTNAG	3 cut(s)	232, 297, 309
Eco130I	CCWWGG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	537
Eco81I	CCTNAGG	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	28, 404
FaiI	YATR	5 cut(s)	26, 362, 402, 412, 414
FatI	CATG	2 cut(s)	24, 400
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	209
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	28, 404
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HphI	GGTGA	2 cut(s)	126, 157
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	497
HpyAV	CCTTC	4 cut(s)	98, 102, 428, 502
HpyCH4V	TGCA	5 cut(s)	63, 208, 335, 354, 404
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 60, 288, 314, 351, 536
HpyF3I	CTNAG	3 cut(s)	232, 297, 309
Hsp92II	CATG	2 cut(s)	28, 404
HspAI	GCGC	1 cut(s)	68
LmnI	GCTCC	3 cut(s)	191, 216, 305
LpnPI	CCDG	8 cut(s)	98, 109, 125, 219, 325, 327, 340, 381
Lsp1109I	GCAGC	1 cut(s)	220
MbiI	CCGCTC	1 cut(s)	186
MboII	GAAGA	3 cut(s)	65, 111, 517
MfeI	CAATTG	1 cut(s)	35
MluCI	AATT	3 cut(s)	10, 35, 172
MmeI	TCCRAC	1 cut(s)	238
MseI	TTAA	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	6 cut(s)	51, 60, 288, 314, 351, 536
NcoI	CCATGG	1 cut(s)	24
NlaIII	CATG	2 cut(s)	28, 404
NlaIV	GGNNCC	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	21
NspI	RCATGY	1 cut(s)	404
PflMI	CCANNNNNTGG	2 cut(s)	112, 374
PkrI	GCNGC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	210, 337
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	113
SfcI	CTRYAG	2 cut(s)	206, 333
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	3 cut(s)	10, 35, 172
SsiI	CCGC	4 cut(s)	66, 146, 184, 345
SspI	AATATT	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	426
TasI	AATT	3 cut(s)	10, 35, 172
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	65, 285, 349
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	337
Van91I	CCANNNNNTGG	2 cut(s)	112, 374
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.