Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Forward (+)

19671674 .. 19672658

Gene Structure 985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1092600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAATACAACAGCGCAATCAGCAAAGCTAAGGGTAATTTTTCTGGGTTTTCGAAATTGTTTTGTTTTGAGAAAACTTATCAAACATTTATGCAAATTATGTGATTTATATGTTAAATTTCATATAGACGGAGATGAGCCAGCACTTTTCTACTTCACTGCAGTCTGGTGCGGGCCTTGCAGGTTCATATCTCCAGTCATTGGAGAGTTGAGTGAGCAATACCCACATGTAACAACATATAAGATTGACATCGATGAGCCTGCATTCCATCTCTTTCAAGACGGGAAGAAGGTGGCTGAAGTTGTTGGTGCTGATGTTGCTCTCTTGAGAGACACTTTTGGAAAACTCTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

119

Amino Acids

13.5

Weight (kDa)

8.28

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	45 - 88	3.4e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	171
AccB7I	CCANNNNNTGG	1 cut(s)	200
AciI	CCGC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	52
BccI	CCATC	1 cut(s)	276
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BcoDI	GTCTC	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	252
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	52
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	141, 173, 261
BstDEI	CTNAG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 177, 317
BstNSI	RCATGY	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	141, 173, 261
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	252
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	5 cut(s)	28, 139, 175, 259, 296
CviKI_1	RGCY	5 cut(s)	28, 139, 175, 259, 296
DdeI	CTNAG	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	318
FaeI	CATG	1 cut(s)	230
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	164
GlaI	GCGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
Hpy188III	TCNNGA	2 cut(s)	278, 325
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	4 cut(s)	93, 161, 180, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 177, 317
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	14
LpnPI	CCDG	6 cut(s)	29, 151, 153, 166, 207, 273
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	298
MluCI	AATT	4 cut(s)	36, 55, 95, 116
MseI	TTAA	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	20, 177, 317
NlaIII	CATG	1 cut(s)	230
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	200
PscI	ACATGT	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	173
SetI	ASST	3 cut(s)	30, 185, 294
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	36, 55, 95, 116
SsiI	CCGC	1 cut(s)	171
TaqI	TCGA	2 cut(s)	52, 252
TasI	AATT	4 cut(s)	36, 55, 95, 116
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	17, 110, 175
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.