Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

15106048 .. 15109248

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG163200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAGCAGCAGAGCTCGACACAAAAATGGCGACAAGAAACTCAGGGCTTCTCCTGGTGCGCCAATTGCTTTCCAATCGCCGCAACCTCTGCGCTGCTCTTCTTCCTCACCACAACCTCCCTTCTTATTCAATCCCAACCCTAACTTCATTCTCAAAGACCCAATCTTCACCTCCTCCCAATCCAAAACCCTTCTCCAATTTCTCAACCTTTCGATCCCTCTCTTCATCCTCAGGTGCTCCCTCCAACATTGTACTCGTTAAGTCTGAGGATGAGTTGAAGAGCGCCCTGAGCAAAGCTAAAGATGGGTCTCTGCCGGCGATTTTTTACTTCACTGCAGTGTGGTGCGGGCCGTGTAAGTTGTTAAAGAGTTTTACTTTTTTACCAAATGAGGACGAAACTTGGGTTATTGATGTGTTTGCAACTTTGATGTACTTTGCAGGCAGGTTCATAGCTCCAGTTATTGGAGAATTGAGTGAGAAGTACCCACATGTGACGACATTTAAGATTGACATTGACGAGGAGGGCCTTGGAAGTGCATTGGGCAAGTTGAATATTTCCTCTGTGGTAAATGGCTTGATCCTCTTATGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

198

Amino Acids

21.59

Weight (kDa)

7.66

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	435
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	2 cut(s)	82, 348
AclWI	GGATC	2 cut(s)	210, 574
AfaI	GTAC	3 cut(s)	255, 434, 485
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	132, 280, 553
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	3 cut(s)	16, 299, 455
AluI	AGCT	3 cut(s)	16, 299, 455
Alw21I	GWGCWC	2 cut(s)	18, 241
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	210, 574
AoxI	GGCC	2 cut(s)	350, 526
ApeKI	GCWGC	2 cut(s)	8, 95
AspLEI	GCGC	3 cut(s)	63, 95, 287
AspS9I	GGNCC	2 cut(s)	350, 526
AsuHPI	GGTGA	2 cut(s)	101, 162
AxyI	CCTNAGG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	18, 241
BbvI	GCAGC	2 cut(s)	20, 82
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	9, 82, 96
BlsI	GCNGC	3 cut(s)	10, 83, 97
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	350, 526
BmrFI	CCNGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	458
Bse21I	CCTNAGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	2 cut(s)	227, 277
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMII	CTCAG	4 cut(s)	57, 246, 258, 281
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	165, 536
BseXI	GCAGC	2 cut(s)	20, 82
BshFI	GGCC	2 cut(s)	352, 528
BsiHKAI	GWGCWC	2 cut(s)	18, 241
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	352, 528
Bso31I	GGTCTC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	18, 241
Bsp143I	GATC	2 cut(s)	215, 579
BspACI	CCGC	2 cut(s)	82, 348
BspANI	GGCC	2 cut(s)	352, 528
BspCNI	CTCAG	4 cut(s)	56, 245, 259, 282
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	210, 574
BspQI	GCTCTTC	2 cut(s)	105, 275
BspTNI	GGTCTC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	2 cut(s)	215, 579
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	56
Bst6I	CTCTTC	3 cut(s)	105, 229, 275
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	318, 350, 442
BstDEI	CTNAG	4 cut(s)	43, 232, 267, 290
BstF5I	GGATG	2 cut(s)	227, 277
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	63, 95, 287
BstKTI	GATC	2 cut(s)	218, 582
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	215, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 90, 291
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	20, 82
Bsu36I	CCTNAGG	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	352, 528
BtsCI	GGATG	2 cut(s)	227, 277
BtsI	GCAGTG	2 cut(s)	333, 345
BtsIMutI	CAGTG	2 cut(s)	333, 345
BveI	ACCTGC	1 cut(s)	435
Cac8I	GCNNGC	3 cut(s)	318, 350, 442
CfoI	GCGC	3 cut(s)	63, 95, 287
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	350, 526
Csp6I	GTAC	3 cut(s)	254, 433, 484
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	7 cut(s)	16, 49, 299, 352, 455, 528, 576
CviKI_1	RGCY	7 cut(s)	16, 49, 299, 352, 455, 528, 576
CviQI	GTAC	3 cut(s)	254, 433, 484
DdeI	CTNAG	4 cut(s)	43, 232, 267, 290
DpnI	GATC	2 cut(s)	217, 581
DpnII	GATC	2 cut(s)	215, 579
Eam1104I	CTCTTC	3 cut(s)	105, 229, 275
EarI	CTCTTC	3 cut(s)	105, 229, 275
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	1 cut(s)	494
FaiI	YATR	3 cut(s)	452, 492, 589
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	341
Fnu4HI	GCNGC	3 cut(s)	9, 82, 96
FokI	GGATG	2 cut(s)	214, 284
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	3 cut(s)	9, 82, 96
GlaI	GCGC	3 cut(s)	62, 94, 286
GluI	GCNGC	3 cut(s)	9, 82, 96
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	352, 528
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	3 cut(s)	63, 95, 287
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	3 cut(s)	61, 93, 285
HinP1I	GCGC	3 cut(s)	61, 93, 285
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	2 cut(s)	101, 162
Hpy188I	TCNGA	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	132, 202
HpyCH4V	TGCA	4 cut(s)	338, 422, 440, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 90, 291
HpyF3I	CTNAG	4 cut(s)	43, 232, 267, 290
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	3 cut(s)	61, 93, 285
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	215, 579
LguI	GCTCTTC	2 cut(s)	105, 275
LmnI	GCTCC	2 cut(s)	244, 460
LpnPI	CCDG	9 cut(s)	30, 41, 68, 219, 302, 330, 426, 430, 471
Lsp1109I	GCAGC	2 cut(s)	20, 82
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	2 cut(s)	217, 581
MboI	GATC	2 cut(s)	215, 579
MboII	GAAGA	5 cut(s)	92, 95, 159, 216, 292
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	18, 241
MluCI	AATT	3 cut(s)	65, 199, 470
MmeI	TCCRAC	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	316
MseI	TTAA	3 cut(s)	261, 365, 504
MslI	CAYNNNNRTG	2 cut(s)	26, 338
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	67, 90, 291
NaeI	GCCGGC	1 cut(s)	318
NdeII	GATC	2 cut(s)	215, 579
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	493
NspI	RCATGY	1 cut(s)	494
OliI	CACNNNNGTG	1 cut(s)	338
PciI	ACATGT	1 cut(s)	490
PciSI	GCTCTTC	2 cut(s)	105, 275
PdiI	GCCGGC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	10, 83, 97
PscI	ACATGT	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	350, 526
PstI	CTGCAG	1 cut(s)	340
RsaI	GTAC	3 cut(s)	255, 434, 485
RsaNI	GTAC	3 cut(s)	254, 433, 484
RseI	CAYNNNNRTG	2 cut(s)	26, 338
SacI	GAGCTC	1 cut(s)	18
SapI	GCTCTTC	2 cut(s)	105, 275
SaqAI	TTAA	3 cut(s)	261, 365, 504
SatI	GCNGC	3 cut(s)	9, 82, 96
Sau3AI	GATC	2 cut(s)	215, 579
Sau96I	GGNCC	2 cut(s)	350, 526
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	18, 241
SetI	ASST	9 cut(s)	18, 90, 120, 175, 212, 238, 301, 449, 457
SfcI	CTRYAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	2 cut(s)	26, 338
Sse9I	AATT	3 cut(s)	65, 199, 470
SsiI	CCGC	2 cut(s)	82, 348
SspI	AATATT	1 cut(s)	556
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	529
TaqI	TCGA	2 cut(s)	18, 214
TasI	AATT	3 cut(s)	65, 199, 470
TatI	WGTACW	2 cut(s)	253, 432
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	261, 365, 504
Tru9I	TTAA	3 cut(s)	261, 365, 504
TscAI	CASTG	2 cut(s)	340, 345
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	2 cut(s)	8, 95
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	138, 216, 439
TspRI	CASTG	2 cut(s)	340, 345
Van91I	CCANNNNNTGG	1 cut(s)	464
XceI	RCATGY	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.